MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 37157 bp
Accession: NZ_CP051535 Location: 1451276..1488432 Organism: Helicobacter pylori strain LIM-008 Replicon: chromosome
Accession: NZ_CP051535 Location: 1451276..1488432 Organism: Helicobacter pylori strain LIM-008 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG581_RS06875 () | 1446650..1447102 | + | 453 | WP_000661837.1 | TonB-system energizer ExbB | - |
| HG581_RS06880 () | 1447113..1447514 | + | 402 | WP_000755082.1 | biopolymer transporter ExbD | - |
| HG581_RS06885 () | 1447586..1447720 | + | 135 | WP_001868466.1 | 50S ribosomal protein L34 | - |
| HG581_RS06890 () | 1447680..1448165 | + | 486 | WP_202137908.1 | ribonuclease P protein component | - |
| HG581_RS06895 () | 1448152..1448505 | + | 354 | WP_202137909.1 | membrane protein insertion efficiency factor YidD | - |
| HG581_RS06900 () | 1448511..1450157 | + | 1647 | WP_202137910.1 | membrane protein insertase YidC | - |
| HG581_RS06905 () | 1450157..1450954 | + | 798 | WP_202137911.1 | Jag N-terminal domain-containing protein | - |
| HG581_RS06910 () | 1450947..1452299 | + | 1353 | WP_202137912.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| HG581_RS06915 () | 1452512..1454752 | + | 2241 | WP_202137913.1 | outer membrane beta-barrel protein | - |
| HG581_RS06920 () | 1454786..1455067 | - | 282 | WP_120849084.1 | hypothetical protein | - |
| HG581_RS06925 () | 1455224..1455487 | + | 264 | WP_097698677.1 | plasmid mobilization relaxosome protein MobC | - |
| HG581_RS06930 () | 1455597..1455728 | + | 132 | Protein_1341 | cagY like protein | - |
| HG581_RS06935 () | 1456136..1457209 | + | 1074 | WP_202137914.1 | Tyrosine recombinase XerH ; Integrase | Integrase |
| HG581_RS06940 () | 1457289..1457972 | - | 684 | WP_202137915.1 | CAAX protease | - |
| HG581_RS06945 () | 1458045..1459307 | - | 1263 | WP_202137916.1 | P-type conjugative transfer protein TrbL | - |
| HG581_RS06950 () | 1459309..1459587 | - | 279 | WP_164500562.1 | hypothetical protein | - |
| HG581_RS06955 () | 1459639..1461039 | - | 1401 | WP_202137917.1 | hypothetical protein | - |
| HG581_RS06960 () | 1461043..1463142 | - | 2100 | WP_202137918.1 | competence protein | - |
| HG581_RS06965 () | 1463142..1464587 | - | 1446 | WP_202137919.1 | hypothetical protein | - |
| HG581_RS06970 () | 1464594..1465610 | - | 1017 | WP_202137920.1 | DUF1738 domain-containing protein | - |
| HG581_RS06975 () | 1465603..1465749 | - | 147 | WP_198930154.1 | hypothetical protein | - |
| HG581_RS06980 () | 1465913..1474393 | + | 8481 | WP_202137921.1 | Eco57I restriction-modification methylase domain-containing protein | - |
| HG581_RS06985 () | 1474667..1475323 | + | 657 | WP_000587413.1 | ParA family protein | - |
| HG581_RS06990 () | 1475404..1475688 | + | 285 | WP_000394655.1 | hypothetical protein ; Integrase | Integrase |
| HG581_RS06995 () | 1475732..1476910 | + | 1179 | WP_202137922.1 | hypothetical protein | - |
| HG581_RS07000 () | 1476935..1478845 | - | 1911 | WP_202137923.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HG581_RS07005 () | 1479144..1479458 | + | 315 | WP_202137924.1 | hypothetical protein | Antitoxin Detail |
| HG581_RS07010 () | 1479451..1479732 | + | 282 | WP_140536263.1 | YafQ family addiction module toxin | Toxin Detail |
| HG581_RS07015 () | 1480185..1480613 | - | 429 | WP_001878871.1 | IS200-IS605 family transposase IS605 | Transposase |
| HG581_RS07020 () | 1480682..1481965 | + | 1284 | WP_202137733.1 | IS200-IS605 family transposase IS605 | Transposase |
| HG581_RS07025 () | 1481922..1483625 | - | 1704 | WP_202137925.1 | type IV secretory system conjugative DNA transfer family protein | - |
| HG581_RS07030 () | 1483626..1484183 | - | 558 | WP_202137926.1 | hypothetical protein | - |
| HG581_RS07035 () | 1484184..1484474 | - | 291 | WP_202137927.1 | hypothetical protein | - |
| HG581_RS07040 () | 1484489..1484926 | - | 438 | WP_077654904.1 | mobilization protein | - |
| HG581_RS07045 () | 1484923..1485864 | - | 942 | WP_000625142.1 | Flp pilus assembly complex ATPase component TadA | - |
| HG581_RS07050 () | 1485864..1486163 | - | 300 | WP_001958576.1 | hypothetical protein | - |
| HG581_RS07055 () | 1486160..1486424 | - | 265 | Protein_1366 | hypothetical protein | - |
| HG581_RS07060 () | 1486414..1486710 | - | 297 | Protein_1367 | hypothetical protein | - |
| HG581_RS07065 () | 1486795..1488029 | - | 1235 | Protein_1368 | DNA type IV secretion system protein ComB10 | - |
| HG581_RS07070 () | 1488026..1489561 | - | 1536 | WP_202137928.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| HG581_RS07075 () | 1489561..1490730 | - | 1170 | WP_128078718.1 | virB8 family protein | - |
| HG581_RS07080 () | 1490847..1492881 | - | 2035 | Protein_1371 | type IA DNA topoisomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|