MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 58909 bp
Accession: NZ_CP051508 Location: 990130..1049038 Organism: Helicobacter pylori strain ASHA-010 Replicon: chromosome
Accession: NZ_CP051508 Location: 990130..1049038 Organism: Helicobacter pylori strain ASHA-010 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG559_RS04670 () | 986237..986599 | + | 363 | WP_202135298.1 | hypothetical protein | - |
| HG559_RS04675 () | 987178..988191 | - | 1014 | WP_202135299.1 | LapA family protein | - |
| HG559_RS04680 () | 988201..988653 | - | 453 | WP_001203873.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| HG559_RS04685 () | 988667..989536 | - | 870 | WP_000505052.1 | acetyl-CoA carboxylase, carboxyltransferase subunit beta | - |
| HG559_RS04690 () | 989617..990231 | + | 615 | WP_202132558.1 | recombination protein RecO | - |
| HG559_RS04695 () | 990242..990898 | + | 657 | WP_180585806.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| HG559_RS04700 () | 990901..991467 | - | 567 | WP_202165783.1 | hypothetical protein | - |
| HG559_RS04705 () | 991532..991939 | - | 408 | WP_202165785.1 | nitroreductase family protein | - |
| HG559_RS04710 () | 991936..992163 | - | 228 | WP_202165787.1 | nitroreductase family protein | - |
| HG559_RS04715 () | 992160..993014 | - | 855 | WP_202165789.1 | prolipoprotein diacylglyceryl transferase | - |
| HG559_RS04720 () | 993024..993752 | - | 729 | WP_000409601.1 | RluA family pseudouridine synthase | - |
| HG559_RS04725 () | 993770..994951 | - | 1182 | WP_202147983.1 | 3-deoxy-D-manno-octulosonic acid transferase | VF |
| HG559_RS04730 () | 994952..995716 | - | 765 | WP_187842955.1 | zinc ribbon domain-containing protein | - |
| HG559_RS04735 () | 995726..996457 | - | 732 | WP_202132563.1 | Nif3-like dinuclear metal center hexameric protein | - |
| HG559_RS04740 () | 996459..997355 | - | 897 | WP_001150911.1 | glycine--tRNA ligase subunit alpha | - |
| HG559_RS04745 () | 997369..998307 | - | 939 | WP_202132564.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| HG559_RS04750 () | 998627..998914 | - | 288 | WP_202165791.1 | hypothetical protein | - |
| HG559_RS04755 () | 998924..1000518 | - | 1595 | Protein_927 | dynamin-like GTPase family protein | - |
| HG559_RS04760 () | 1000574..1001338 | + | 765 | WP_202135306.1 | hypothetical protein | - |
| HG559_RS04765 () | 1001349..1003265 | + | 1917 | WP_202135307.1 | hypothetical protein | - |
| HG559_RS04770 () | 1003255..1003557 | + | 303 | WP_000649845.1 | TrbC/VirB2 family protein | - |
| HG559_RS04775 () | 1003831..1004616 | + | 786 | Protein_931 | VirB4 family type IV secretion system protein | - |
| HG559_RS04780 () | 1004742..1005158 | - | 417 | WP_202135308.1 | IS200-IS605 family transposase IS606 | Transposase |
| HG559_RS04785 () | 1005195..1006541 | + | 1347 | WP_202136114.1 | IS200-IS605 family transposase IS606 | Transposase |
| HG559_RS04790 () | 1006595..1006990 | + | 396 | WP_202136012.1 | VirB4 family type IV secretion system protein | - |
| HG559_RS04795 () | 1007052..1008293 | + | 1242 | WP_202136115.1 | Type IV secretion system protein PtlC | VF |
| HG559_RS04800 () | 1008286..1010220 | + | 1935 | WP_202136116.1 | type IA DNA topoisomerase | - |
| HG559_RS04805 () | 1010350..1011336 | + | 987 | WP_202135311.1 | hypothetical protein | VF |
| HG559_RS04810 () | 1011336..1012877 | + | 1542 | WP_202135312.1 | hypothetical protein | VF |
| HG559_RS04815 () | 1012874..1014111 | + | 1238 | Protein_939 | Type IV secretion system protein virB10 | VF |
| HG559_RS04820 () | 1014181..1014473 | + | 293 | Protein_940 | hypothetical protein | - |
| HG559_RS04825 () | 1014466..1014749 | + | 284 | Protein_941 | hypothetical protein | - |
| HG559_RS04830 () | 1014731..1015032 | + | 302 | Protein_942 | hypothetical protein | - |
| HG559_RS04835 () | 1015032..1015973 | + | 942 | Protein_943 | Type IV secretion system protein PtlH | VF |
| HG559_RS04840 () | 1015970..1016425 | + | 456 | WP_202135313.1 | mobilization protein | - |
| HG559_RS04845 () | 1016422..1016712 | + | 291 | WP_202135314.1 | hypothetical protein | - |
| HG559_RS04850 () | 1016713..1017270 | + | 558 | WP_202135315.1 | hypothetical protein | - |
| HG559_RS04855 () | 1017271..1018998 | + | 1728 | WP_202165793.1 | Protein VirD4 | VF |
| HG559_RS04860 () | 1019273..1019554 | - | 282 | WP_000921935.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| HG559_RS04865 () | 1019547..1019861 | - | 315 | WP_000065286.1 | hypothetical protein | Antitoxin Detail |
| HG559_RS04870 () | 1020153..1020308 | + | 156 | WP_202135317.1 | relaxase | - |
| HG559_RS04875 () | 1020325..1020951 | + | 627 | WP_202135318.1 | hypothetical protein | - |
| HG559_RS04880 () | 1021008..1021937 | - | 930 | WP_202135319.1 | hypothetical protein | - |
| HG559_RS04885 () | 1022171..1023148 | + | 978 | WP_202165795.1 | HipA domain-containing protein | - |
| HG559_RS04890 () | 1023320..1023694 | + | 375 | Protein_954 | CAAX protease | - |
| HG559_RS04895 () | 1023779..1024003 | + | 225 | WP_202165797.1 | hypothetical protein | - |
| HG559_RS04900 () | 1024137..1024925 | + | 789 | WP_202135322.1 | Fic family protein | - |
| HG559_RS04905 () | 1025243..1026310 | - | 1068 | WP_202135323.1 | Tyrosine recombinase XerH ; Integrase | Integrase |
| HG559_RS04910 () | 1027407..1029446 | - | 2040 | WP_202135324.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HG559_RS04915 () | 1030453..1032473 | - | 2021 | Protein_959 | dynamin family protein | - |
| HG559_RS04920 () | 1032475..1033444 | - | 970 | Protein_960 | hypothetical protein | - |
| HG559_RS04925 () | 1033872..1034118 | - | 247 | Protein_961 | hypothetical protein | - |
| HG559_RS04930 () | 1034321..1034608 | - | 288 | WP_202132566.1 | virulence factor | - |
| HG559_RS04935 () | 1034676..1034957 | - | 282 | WP_000880304.1 | DUF3240 family protein | - |
| HG559_RS04940 () | 1034968..1038027 | - | 3060 | WP_202132567.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| HG559_RS04945 () | 1038027..1039106 | - | 1080 | WP_202132568.1 | sodium:proton antiporter | - |
| HG559_RS04950 () | 1039103..1040410 | - | 1308 | WP_202132569.1 | TolC family protein | - |
| HG559_RS04955 () | 1040400..1042502 | - | 2103 | WP_202132570.1 | glycine--tRNA ligase subunit beta | - |
| HG559_RS04960 () | 1042614..1043681 | + | 1068 | WP_202132571.1 | hypothetical protein | - |
| HG559_RS04965 () | 1043694..1045169 | + | 1476 | WP_202132572.1 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | - |
| HG559_RS04970 () | 1045184..1045465 | + | 282 | WP_202132573.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC | - |
| HG559_RS04975 () | 1045539..1046849 | - | 1311 | WP_202135328.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| HG559_RS04980 () | 1046979..1048442 | + | 1464 | WP_202165799.1 | peptidylprolyl isomerase | - |
| HG559_RS04985 () | 1048442..1049941 | + | 1500 | WP_202165801.1 | cell division protein FtsA | - |
| HG559_RS04990 () | 1050071..1051219 | + | 1149 | WP_202166295.1 | cell division protein FtsZ | - |
| HG559_RS04995 () | 1051501..1052823 | - | 1323 | Protein_975 | transposase | - |
| HG559_RS05000 () | 1052934..1053095 | - | 162 | WP_202135331.1 | hypothetical protein | - |
| HG559_RS05005 () | 1053145..1053501 | - | 357 | Protein_977 | mechanosensitive ion channel | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|