MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 126288 bp
Accession: NZ_CP051497 Location: 1080766..1207053 Organism: Helicobacter pylori strain PUNO-007 Replicon: chromosome
Accession: NZ_CP051497 Location: 1080766..1207053 Organism: Helicobacter pylori strain PUNO-007 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG570_RS05000 () | 1075770..1076498 | + | 729 | WP_202141407.1 | tRNA pseudouridine(38-40) synthase TruA | - |
| HG570_RS05005 () | 1076492..1077526 | - | 1035 | WP_202141408.1 | UDP-glucose 4-epimerase GalE | - |
| HG570_RS05020 () | 1078058..1079593 | + | 1536 | WP_202141409.1 | hypothetical protein | - |
| HG570_RS05025 () | 1079614..1080366 | + | 753 | WP_202141410.1 | SDR family oxidoreductase | - |
| HG570_RS05030 () | 1080552..1081424 | - | 873 | WP_202141411.1 | sel1 repeat family protein | - |
| HG570_RS05035 () | 1081494..1082120 | - | 627 | WP_202141412.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| HG570_RS05040 () | 1082139..1083965 | - | 1827 | WP_165514125.1 | phosphogluconate dehydratase | - |
| HG570_RS05045 () | 1084031..1085308 | + | 1278 | WP_202141413.1 | glucose-6-phosphate dehydrogenase | - |
| HG570_RS05050 () | 1085319..1086002 | + | 684 | WP_202141414.1 | 6-phosphogluconolactonase | - |
| HG570_RS05055 () | 1085989..1086999 | + | 1011 | WP_001126858.1 | glucokinase | - |
| HG570_RS05060 () | 1087161..1088207 | + | 1047 | WP_202141415.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| HG570_RS05065 () | 1088220..1089509 | - | 1290 | Protein_980 | glycosyltransferase family 8 protein | - |
| HG570_RS05070 () | 1089650..1090840 | - | 1191 | WP_202141416.1 | glycosyltransferase family 8 protein | - |
| HG570_RS05075 () | 1091027..1092334 | + | 1308 | WP_202141417.1 | hypothetical protein | - |
| HG570_RS05080 () | 1092341..1093012 | - | 672 | WP_187842931.1 | outer membrane protein | - |
| HG570_RS05085 () | 1093290..1093850 | + | 561 | WP_000486455.1 | pyruvate flavodoxin oxidoreductase subunit gamma | - |
| HG570_RS05090 () | 1093866..1094258 | + | 393 | WP_000656168.1 | 4Fe-4S binding protein | - |
| HG570_RS05095 () | 1094268..1095491 | + | 1224 | WP_128076918.1 | 2-oxoacid:ferredoxin oxidoreductase subunit alpha | - |
| HG570_RS05100 () | 1095504..1096448 | + | 945 | WP_000238169.1 | pyruvate ferredoxin oxidoreductase subunit beta | - |
| HG570_RS05105 () | 1096559..1097881 | + | 1323 | WP_202141418.1 | adenylosuccinate lyase | - |
| HG570_RS05110 () | 1097951..1098784 | + | 834 | WP_202141419.1 | outer membrane protein | - |
| HG570_RS05115 () | 1098795..1100771 | - | 1977 | WP_202141420.1 | excinuclease ABC subunit B | - |
| HG570_RS05120 () | 1101030..1102016 | - | 987 | Protein_991 | DUF3519 domain-containing protein | - |
| HG570_RS05125 () | 1102202..1102972 | - | 771 | WP_202141421.1 | sel1 repeat family protein | - |
| HG570_RS05130 () | 1103240..1104943 | - | 1704 | WP_202141422.1 | Glutathione hydrolase proenzyme | VF |
| HG570_RS05135 () | 1105148..1106968 | - | 1821 | WP_202141423.1 | Flagellar hook-associated protein 1 | VF |
| HG570_RS05140 () | 1106970..1107404 | - | 435 | WP_202141424.1 | hypothetical protein | - |
| HG570_RS05145 () | 1107534..1108490 | - | 957 | WP_202141425.1 | DNA cytosine methyltransferase | - |
| HG570_RS05150 () | 1108630..1108833 | - | 204 | WP_000606244.1 | hypothetical protein | VF |
| HG570_RS05155 () | 1108897..1109103 | - | 207 | WP_001088955.1 | hypothetical protein | - |
| HG570_RS05160 () | 1109135..1109692 | - | 558 | WP_202141426.1 | peptidylprolyl isomerase | - |
| HG570_RS05165 () | 1109679..1110674 | - | 996 | WP_202141427.1 | hypothetical protein | - |
| HG570_RS05170 () | 1110682..1111221 | - | 540 | WP_202141428.1 | Outer membrane protein P6 | VF |
| HG570_RS05175 () | 1111288..1112541 | - | 1254 | WP_202141429.1 | Tol-Pal system protein TolB | - |
| HG570_RS05180 () | 1112538..1113350 | - | 813 | WP_202141430.1 | TonB C-terminal domain-containing protein | - |
| HG570_RS05185 () | 1113369..1113770 | - | 402 | WP_001105106.1 | ExbD/TolR family protein | - |
| HG570_RS05190 () | 1113823..1114392 | - | 570 | WP_000887313.1 | MotA/TolQ/ExbB proton channel family protein | - |
| HG570_RS05195 () | 1114403..1114774 | - | 372 | WP_202140471.1 | F0F1 ATP synthase subunit epsilon | - |
| HG570_RS05200 () | 1114785..1116185 | - | 1401 | WP_014537155.1 | ATP synthase subunit beta | VF |
| HG570_RS05205 () | 1116214..1117119 | - | 906 | WP_202140472.1 | F0F1 ATP synthase subunit gamma | - |
| HG570_RS05210 () | 1117134..1118645 | - | 1512 | WP_180597091.1 | ATP synthase subunit alpha | VF |
| HG570_RS05215 () | 1118668..1119210 | - | 543 | WP_202141431.1 | F0F1 ATP synthase subunit delta | - |
| HG570_RS05220 () | 1119211..1119726 | - | 516 | WP_000480445.1 | F0F1 ATP synthase subunit B | - |
| HG570_RS05225 () | 1119730..1120164 | - | 435 | WP_121070319.1 | FoF1 ATP synthase subunit B' | - |
| HG570_RS05230 () | 1120275..1121147 | - | 873 | WP_202141432.1 | ParB/RepB/Spo0J family partition protein | - |
| HG570_RS05235 () | 1121150..1121944 | - | 795 | WP_001874325.1 | Sporulation initiation inhibitor protein Soj | VF |
| HG570_RS05240 () | 1121950..1122588 | - | 639 | WP_202141433.1 | biotin--[acetyl-CoA-carboxylase] ligase | - |
| HG570_RS05245 () | 1122585..1123496 | - | 912 | WP_202141434.1 | Methionyl-tRNA formyltransferase | VF |
| HG570_RS05250 () | 1123520..1125820 | - | 2301 | WP_202141435.1 | AAA family ATPase | - |
| HG570_RS05255 () | 1125863..1127164 | - | 1302 | WP_202141436.1 | DUF2130 domain-containing protein | - |
| HG570_RS05265 () | 1130298..1131101 | - | 804 | WP_202141437.1 | NYN domain-containing protein | - |
| HG570_RS05270 () | 1131433..1131789 | - | 357 | WP_000797698.1 | 50S ribosomal protein L19 | - |
| HG570_RS05275 () | 1131811..1132500 | - | 690 | WP_202141438.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| HG570_RS05280 () | 1132501..1133055 | - | 555 | WP_202141439.1 | ribosome maturation factor RimM | - |
| HG570_RS05285 () | 1133056..1133403 | - | 348 | WP_001208527.1 | KH domain-containing protein | - |
| HG570_RS05290 () | 1133420..1133650 | - | 231 | WP_000216137.1 | 30S ribosomal protein S16 | - |
| HG570_RS05295 () | 1133724..1135070 | - | 1347 | WP_202141440.1 | signal recognition particle protein | - |
| HG570_RS05300 () | 1135085..1137703 | - | 2619 | WP_202141441.1 | valine--tRNA ligase | - |
| HG570_RS05305 () | 1137840..1138247 | + | 408 | WP_001105835.1 | Flagellar assembly factor FliW 1 | VF |
| HG570_RS05310 () | 1138259..1139320 | + | 1062 | WP_000666584.1 | undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase | - |
| HG570_RS05315 () | 1139427..1141517 | + | 2091 | WP_202141442.1 | hypothetical protein | VF |
| HG570_RS05320 () | 1141540..1145217 | + | 3678 | WP_202141443.1 | hypothetical protein | VF |
| HG570_RS05325 () | 1145231..1146028 | + | 798 | WP_202141444.1 | pyrroline-5-carboxylate reductase | - |
| HG570_RS05330 () | 1146073..1146838 | + | 766 | Protein_1032 | hypothetical protein | - |
| HG570_RS05335 () | 1146850..1148760 | + | 1911 | WP_202141445.1 | hypothetical protein | - |
| HG570_RS05340 () | 1148750..1149052 | + | 303 | WP_000649840.1 | TrbC/VirB2 family protein | - |
| HG570_RS05345 () | 1149053..1149313 | + | 261 | WP_000602756.1 | hypothetical protein | - |
| HG570_RS05350 () | 1149326..1151242 | + | 1917 | WP_202141446.1 | Type IV secretion system protein PtlC | VF |
| HG570_RS05355 () | 1151248..1151802 | + | 555 | WP_202142500.1 | Protein virB4 | VF |
| HG570_RS05360 () | 1151795..1153729 | + | 1935 | WP_202141447.1 | type IA DNA topoisomerase | - |
| HG570_RS05365 () | 1153859..1154845 | + | 987 | WP_120808425.1 | hypothetical protein | VF |
| HG570_RS05370 () | 1154845..1156386 | + | 1542 | WP_202141448.1 | hypothetical protein | VF |
| HG570_RS05375 () | 1156383..1157618 | + | 1236 | WP_202141449.1 | Type IV secretion system protein virB10 | VF |
| HG570_RS05380 () | 1157688..1157981 | + | 294 | WP_202141450.1 | hypothetical protein | - |
| HG570_RS05385 () | 1157974..1158237 | + | 264 | WP_202141451.1 | hypothetical protein | - |
| HG570_RS05390 () | 1158234..1158533 | + | 300 | WP_121086536.1 | hypothetical protein | - |
| HG570_RS05395 () | 1158533..1159474 | + | 942 | WP_202141452.1 | Type IV secretion system protein VirB11 | VF |
| HG570_RS05400 () | 1159471..1159926 | + | 456 | WP_000795426.1 | hypothetical protein | - |
| HG570_RS05405 () | 1159923..1160213 | + | 291 | WP_000159813.1 | hypothetical protein | - |
| HG570_RS05410 () | 1160214..1160771 | + | 558 | WP_202141453.1 | hypothetical protein | - |
| HG570_RS05415 () | 1160772..1162520 | + | 1749 | WP_202141454.1 | Protein VirD4 | VF |
| HG570_RS05420 () | 1162767..1163048 | - | 282 | WP_088297872.1 | YafQ family addiction module toxin | Toxin Detail |
| HG570_RS05425 () | 1163041..1163355 | - | 315 | WP_079359914.1 | hypothetical protein | Antitoxin Detail |
| HG570_RS05430 () | 1163659..1165572 | + | 1914 | WP_202141455.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HG570_RS05435 () | 1165597..1166769 | - | 1173 | WP_202141456.1 | hypothetical protein | - |
| HG570_RS05440 () | 1166813..1167094 | - | 282 | WP_202141457.1 | hypothetical protein ; Integrase | Integrase |
| HG570_RS05445 () | 1167179..1167835 | - | 657 | WP_202141458.1 | ParA family protein | - |
| HG570_RS05450 () | 1168102..1176539 | - | 8438 | Protein_1056 | DEAD/DEAH box helicase family protein | - |
| HG570_RS05455 () | 1176693..1177730 | + | 1038 | WP_202141459.1 | hypothetical protein | - |
| HG570_RS05460 () | 1177731..1179125 | + | 1395 | WP_202141460.1 | hypothetical protein | - |
| HG570_RS05465 () | 1179186..1181363 | + | 2178 | WP_202141461.1 | competence protein | - |
| HG570_RS05470 () | 1181367..1182752 | + | 1386 | Protein_1060 | hypothetical protein | - |
| HG570_RS05475 () | 1182752..1183954 | + | 1203 | WP_202141462.1 | hypothetical protein | - |
| HG570_RS05480 () | 1184017..1185093 | - | 1077 | WP_202141463.1 | Tyrosine recombinase XerH ; Integrase | Integrase |
| HG570_RS05485 () | 1185411..1185944 | + | 534 | WP_202141464.1 | Fic/DOC family protein | - |
| HG570_RS05490 () | 1185959..1186719 | - | 761 | Protein_1064 | TauD/TfdA family dioxygenase | - |
| HG570_RS05495 () | 1186736..1187257 | - | 522 | WP_202141465.1 | hypothetical protein | - |
| HG570_RS05500 () | 1187353..1187781 | - | 429 | WP_202141466.1 | rRNA maturation RNase YbeY | - |
| HG570_RS05505 () | 1187835..1188329 | - | 495 | WP_000516045.1 | flavodoxin | - |
| HG570_RS05510 () | 1188417..1188998 | - | 582 | WP_202141467.1 | DedA family protein | - |
| HG570_RS05515 () | 1189121..1189318 | + | 198 | WP_001090939.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| HG570_RS05520 () | 1189344..1190318 | + | 975 | WP_202141468.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| HG570_RS05525 () | 1190326..1191486 | - | 1161 | WP_202141469.1 | MFS transporter | - |
| HG570_RS05530 () | 1191550..1193187 | + | 1638 | WP_202141470.1 | glucose-6-phosphate isomerase | - |
| HG570_RS05535 () | 1193495..1194910 | + | 1416 | WP_202141471.1 | outer membrane family protein | - |
| HG570_RS05540 () | 1195226..1197319 | - | 2094 | WP_202141472.1 | carbon starvation protein A | - |
| HG570_RS05545 () | 1197500..1198153 | + | 654 | WP_202141473.1 | amino acid ABC transporter permease | - |
| HG570_RS05550 () | 1198155..1198826 | + | 672 | WP_000538485.1 | amino acid ABC transporter permease | - |
| HG570_RS05555 () | 1198828..1199574 | + | 747 | WP_202141474.1 | Arginine transport ATP-binding protein ArtM | VF |
| HG570_RS05560 () | 1199623..1200456 | + | 834 | WP_202141475.1 | transporter substrate-binding domain-containing protein | - |
| HG570_RS05565 () | 1200577..1201128 | + | 552 | WP_202141476.1 | hypothetical protein | - |
| HG570_RS05570 () | 1201351..1202574 | - | 1224 | WP_202141477.1 | L-fucose-proton symporter | VF |
| HG570_RS05575 () | 1202704..1204011 | - | 1308 | WP_202141478.1 | NCS2 family permease | - |
| HG570_RS05580 () | 1204463..1206385 | - | 1923 | WP_202141479.1 | hypothetical protein | VF |
| HG570_RS05585 () | 1206655..1207359 | - | 705 | WP_127990594.1 | purine-nucleoside phosphorylase | - |
| HG570_RS05590 () | 1207356..1208597 | - | 1242 | WP_202141480.1 | phosphopentomutase | - |
| HG570_RS05595 () | 1208609..1209865 | - | 1257 | WP_202141481.1 | NupC/NupG family nucleoside CNT transporter | - |
| HG570_RS05605 () | 1210191..1211522 | + | 1332 | WP_202141482.1 | MFS transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|