MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 58911 bp
Accession: NZ_CP051435 Location: 989176..1048086 Organism: Helicobacter pylori strain ASHA-005 Replicon: chromosome
Accession: NZ_CP051435 Location: 989176..1048086 Organism: Helicobacter pylori strain ASHA-005 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGK50_RS04660 () | 985293..985655 | + | 363 | WP_202135298.1 | hypothetical protein | - |
| HGK50_RS04665 () | 986224..987237 | - | 1014 | WP_202135299.1 | LapA family protein | - |
| HGK50_RS04670 () | 987247..987699 | - | 453 | WP_001203873.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| HGK50_RS04675 () | 987713..988582 | - | 870 | WP_000505052.1 | acetyl-CoA carboxylase, carboxyltransferase subunit beta | - |
| HGK50_RS04680 () | 988663..989277 | + | 615 | WP_202132558.1 | recombination protein RecO | - |
| HGK50_RS04685 () | 989288..989944 | + | 657 | WP_202147978.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| HGK50_RS04690 () | 989947..990513 | - | 567 | WP_202147980.1 | hypothetical protein | - |
| HGK50_RS04695 () | 990578..991210 | - | 633 | WP_202147981.1 | NAD(P)H-dependent oxidoreductase | - |
| HGK50_RS04700 () | 991207..992061 | - | 855 | WP_202147982.1 | prolipoprotein diacylglyceryl transferase | - |
| HGK50_RS04705 () | 992071..992799 | - | 729 | WP_120934892.1 | RluA family pseudouridine synthase | - |
| HGK50_RS04710 () | 992817..993998 | - | 1182 | WP_202147983.1 | 3-deoxy-D-manno-octulosonic acid transferase | VF |
| HGK50_RS04715 () | 993999..994763 | - | 765 | WP_202147985.1 | zinc ribbon domain-containing protein | - |
| HGK50_RS04720 () | 994773..995504 | - | 732 | WP_202132563.1 | Nif3-like dinuclear metal center hexameric protein | - |
| HGK50_RS04725 () | 995506..996402 | - | 897 | WP_001150911.1 | glycine--tRNA ligase subunit alpha | - |
| HGK50_RS04730 () | 996416..997353 | - | 938 | Protein_922 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| HGK50_RS04735 () | 997673..997933 | - | 261 | WP_202135305.1 | hypothetical protein | - |
| HGK50_RS04740 () | 997970..999549 | - | 1580 | Protein_924 | dynamin-like GTPase family protein | - |
| HGK50_RS04745 () | 999605..1000369 | + | 765 | WP_202135306.1 | hypothetical protein | - |
| HGK50_RS04750 () | 1000380..1002296 | + | 1917 | WP_202135307.1 | hypothetical protein | - |
| HGK50_RS04755 () | 1002286..1002588 | + | 303 | WP_000649845.1 | TrbC/VirB2 family protein | - |
| HGK50_RS04760 () | 1002862..1003647 | + | 786 | Protein_928 | VirB4 family type IV secretion system protein | - |
| HGK50_RS04765 () | 1003773..1004189 | - | 417 | WP_202135308.1 | IS200-IS605 family transposase IS606 | Transposase |
| HGK50_RS04770 () | 1004226..1005572 | + | 1347 | WP_202136114.1 | IS200-IS605 family transposase IS606 | Transposase |
| HGK50_RS04775 () | 1005626..1006021 | + | 396 | WP_202136012.1 | VirB4 family type IV secretion system protein | - |
| HGK50_RS04780 () | 1006083..1007324 | + | 1242 | WP_202136115.1 | Type IV secretion system protein PtlC | VF |
| HGK50_RS04785 () | 1007317..1009251 | + | 1935 | WP_202136116.1 | type IA DNA topoisomerase | - |
| HGK50_RS04790 () | 1009381..1010367 | + | 987 | WP_202135311.1 | hypothetical protein | VF |
| HGK50_RS04795 () | 1010367..1011908 | + | 1542 | WP_202135312.1 | hypothetical protein | VF |
| HGK50_RS04800 () | 1011905..1013142 | + | 1238 | Protein_936 | Type IV secretion system protein virB10 | VF |
| HGK50_RS04805 () | 1013212..1013504 | + | 293 | Protein_937 | hypothetical protein | - |
| HGK50_RS04810 () | 1013497..1013780 | + | 284 | Protein_938 | hypothetical protein | - |
| HGK50_RS04815 () | 1013762..1014063 | + | 302 | Protein_939 | hypothetical protein | - |
| HGK50_RS04820 () | 1014063..1015004 | + | 942 | Protein_940 | Type IV secretion system protein PtlH | VF |
| HGK50_RS04825 () | 1015001..1015456 | + | 456 | WP_202135313.1 | mobilization protein | - |
| HGK50_RS04830 () | 1015453..1015743 | + | 291 | WP_202135314.1 | hypothetical protein | - |
| HGK50_RS04835 () | 1015744..1016301 | + | 558 | WP_202135315.1 | hypothetical protein | - |
| HGK50_RS04840 () | 1016302..1018029 | + | 1728 | WP_202135316.1 | Protein VirD4 | VF |
| HGK50_RS04845 () | 1018304..1018585 | - | 282 | WP_000921935.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| HGK50_RS04850 () | 1018578..1018892 | - | 315 | WP_000065286.1 | hypothetical protein | Antitoxin Detail |
| HGK50_RS04855 () | 1019184..1019339 | + | 156 | WP_202135317.1 | relaxase | - |
| HGK50_RS04860 () | 1019356..1019982 | + | 627 | WP_202135318.1 | hypothetical protein | - |
| HGK50_RS04865 () | 1020039..1020968 | - | 930 | WP_202135319.1 | hypothetical protein | - |
| HGK50_RS04870 () | 1021202..1022179 | + | 978 | WP_202135320.1 | HipA domain-containing protein | - |
| HGK50_RS04875 () | 1022351..1022725 | + | 375 | Protein_951 | CAAX protease | - |
| HGK50_RS04880 () | 1022747..1023034 | + | 288 | WP_202135321.1 | hypothetical protein | - |
| HGK50_RS04885 () | 1023168..1023956 | + | 789 | WP_202135322.1 | Fic family protein | - |
| HGK50_RS04890 () | 1024274..1025341 | - | 1068 | WP_202135323.1 | Tyrosine recombinase XerH ; Integrase | Integrase |
| HGK50_RS04895 () | 1026438..1028477 | - | 2040 | WP_202135324.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HGK50_RS04900 () | 1029484..1031504 | - | 2021 | Protein_956 | dynamin family protein | - |
| HGK50_RS04905 () | 1031506..1033153 | - | 1648 | Protein_957 | dynamin family protein | - |
| HGK50_RS04910 () | 1033369..1033656 | - | 288 | WP_202132566.1 | virulence factor | - |
| HGK50_RS04915 () | 1033724..1034005 | - | 282 | WP_000880304.1 | DUF3240 family protein | - |
| HGK50_RS04920 () | 1034016..1037075 | - | 3060 | WP_202147986.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| HGK50_RS04925 () | 1037075..1038154 | - | 1080 | WP_202147987.1 | sodium:proton antiporter | - |
| HGK50_RS04930 () | 1038151..1039458 | - | 1308 | WP_202132569.1 | TolC family protein | - |
| HGK50_RS04935 () | 1039448..1041550 | - | 2103 | WP_202132570.1 | glycine--tRNA ligase subunit beta | - |
| HGK50_RS04940 () | 1041662..1042729 | + | 1068 | WP_202132571.1 | hypothetical protein | - |
| HGK50_RS04945 () | 1042742..1044217 | + | 1476 | WP_202132572.1 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | - |
| HGK50_RS04950 () | 1044232..1044513 | + | 282 | WP_202132573.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC | - |
| HGK50_RS04955 () | 1044587..1045897 | - | 1311 | WP_202135328.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| HGK50_RS04960 () | 1046027..1047490 | + | 1464 | WP_202135329.1 | peptidylprolyl isomerase | - |
| HGK50_RS04965 () | 1047490..1048989 | + | 1500 | WP_202135330.1 | cell division protein FtsA | - |
| HGK50_RS04970 () | 1049119..1050267 | + | 1149 | WP_202132577.1 | cell division protein FtsZ | - |
| HGK50_RS04975 () | 1050549..1051871 | - | 1323 | Protein_971 | transposase | - |
| HGK50_RS04980 () | 1051982..1052143 | - | 162 | WP_202135331.1 | hypothetical protein | - |
| HGK50_RS04985 () | 1052193..1053017 | - | 825 | WP_202132578.1 | mechanosensitive ion channel family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|