MGE detailed information
MGE type: Conjugative plasmid MGE length: 96595 bp
Accession: NZ_CP051433 Location: 1..96595 Organism: Escherichia sp. SCLE84 Replicon: plasmid pSCLE3
Accession: NZ_CP051433 Location: 1..96595 Organism: Escherichia sp. SCLE84 Replicon: plasmid pSCLE3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGD79_RS25755 () | 1..858 | + | 858 | WP_042634321.1 | incFII family plasmid replication initiator RepA | - |
| HGD79_RS25760 () | 1824..2075 | + | 252 | WP_001132900.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| HGD79_RS25765 () | 2072..2359 | + | 288 | WP_000222766.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HGD79_RS25775 () | 4476..8378 | + | 3903 | WP_168848549.1 | Serine protease EspP | VF |
| HGD79_RS25780 () | 8688..8990 | + | 303 | Protein_5 | IS3 family transposase ISEc31 | Transposase |
| HGD79_RS25785 () | 9003..10154 | - | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| HGD79_RS25790 () | 10222..10479 | - | 258 | Protein_7 | IS3 family transposase IS911 | Transposase |
| HGD79_RS26405 () | 10575..10790 | + | 216 | Protein_8 | helix-turn-helix transcriptional regulator | - |
| HGD79_RS26410 () | 10758..10949 | - | 192 | Protein_9 | IS91 family transposase | - |
| HGD79_RS25800 () | 11120..15253 | + | 4134 | WP_063085579.1 | Hemoglobin-binding protease hbp autotransporter | VF |
| HGD79_RS25805 () | 15362..15813 | + | 452 | Protein_11 | peptide deformylase | - |
| HGD79_RS25810 () | 16071..17270 | - | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| HGD79_RS25815 () | 17280..17468 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| HGD79_RS25820 () | 17670..19133 | - | 1464 | Protein_14 | group II intron reverse transcriptase/maturase | - |
| HGD79_RS25825 () | 19122..20309 | - | 1188 | Protein_15 | ISL3 family transposase ISCfr12 | Transposase |
| HGD79_RS25830 () | 20427..20876 | - | 450 | WP_105910642.1 | hypothetical protein | - |
| HGD79_RS25835 () | 20873..23320 | - | 2448 | WP_094308965.1 | F1 capsule-anchoring protein | VF |
| HGD79_RS25840 () | 23336..24097 | - | 762 | WP_074425405.1 | Chaperone protein caf1M | VF |
| HGD79_RS25845 () | 24238..24741 | - | 504 | WP_157769469.1 | Fimbrial protein | VF |
| HGD79_RS25850 () | 25173..25781 | + | 609 | WP_074425400.1 | IS481 family transposase ISErsp1 | Transposase |
| HGD79_RS25855 () | 25846..26442 | + | 597 | Protein_21 | Serine protease pic autotransporter | VF |
| HGD79_RS25860 () | 26638..27120 | + | 483 | WP_168848550.1 | hypothetical protein | - |
| HGD79_RS25865 () | 27334..28164 | + | 831 | WP_112889124.1 | AraC family transcriptional regulator | - |
| HGD79_RS25870 () | 28295..29251 | - | 957 | WP_112889123.1 | IS481 family transposase ISErsp1 | Transposase |
| HGD79_RS25875 () | 29214..29666 | + | 453 | Protein_25 | IS110 family transposase | - |
| HGD79_RS25880 () | 29683..29991 | + | 309 | Protein_26 | DDE-type integrase/transposase/recombinase | - |
| HGD79_RS25885 () | 30021..30230 | - | 210 | WP_094308932.1 | hypothetical protein | - |
| HGD79_RS25890 () | 30279..30482 | - | 204 | WP_004150739.1 | hemolysin expression modulator Hha | - |
| HGD79_RS25895 () | 30543..31037 | - | 495 | WP_094313750.1 | DNA-binding protein | - |
| HGD79_RS25900 () | 31068..31640 | - | 573 | WP_094309628.1 | hypothetical protein | - |
| HGD79_RS25905 () | 31645..31893 | - | 249 | WP_065801593.1 | hypothetical protein | - |
| HGD79_RS25910 () | 32172..33178 | - | 1007 | Protein_32 | IS110 family transposase ISEc11 | Transposase |
| HGD79_RS25915 () | 33735..33989 | - | 255 | WP_095153353.1 | hypothetical protein | - |
| HGD79_RS25920 () | 34053..34298 | - | 246 | WP_065801591.1 | hypothetical protein | - |
| HGD79_RS25925 () | 34333..34749 | - | 417 | WP_023292131.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HGD79_RS25930 () | 34746..34976 | - | 231 | WP_021312476.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| HGD79_RS25935 () | 35552..35902 | + | 351 | WP_000493379.1 | hypothetical protein | - |
| HGD79_RS25940 () | 35946..36155 | + | 210 | Protein_38 | hypothetical protein | - |
| HGD79_RS25945 () | 36631..37422 | + | 792 | WP_112907394.1 | site-specific integrase | - |
| HGD79_RS25950 () | 37560..37835 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| HGD79_RS25955 () | 37829..38473 | - | 645 | WP_000633913.1 | AAA family ATPase | - |
| HGD79_RS25960 () | 38702..39673 | + | 972 | WP_001103690.1 | hypothetical protein | - |
| HGD79_RS25965 () | 39678..40070 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| HGD79_RS25970 () | 40075..41346 | - | 1272 | WP_000457496.1 | Y-family DNA polymerase | - |
| HGD79_RS25975 () | 41346..41783 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HGD79_RS25980 () | 41780..42028 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| HGD79_RS25985 () | 42446..43348 | + | 903 | WP_001302618.1 | DUF1281 domain-containing protein | - |
| HGD79_RS25990 () | 43345..43656 | + | 312 | WP_032317461.1 | hypothetical protein | - |
| HGD79_RS25995 () | 43733..44416 | + | 684 | WP_168848551.1 | DNA methylase | - |
| HGD79_RS26000 () | 44417..44638 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| HGD79_RS26005 () | 44652..45086 | + | 435 | WP_112889193.1 | DUF1380 family protein | - |
| HGD79_RS26415 () | 45132..45908 | + | 777 | WP_175120217.1 | hypothetical protein | - |
| HGD79_RS26020 () | 46448..46750 | + | 303 | WP_075207376.1 | antirestriction protein | - |
| HGD79_RS26025 () | 46797..47219 | + | 423 | WP_000271726.1 | DUF1380 family protein | - |
| HGD79_RS26030 () | 47216..47407 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| HGD79_RS26035 () | 47679..47927 | - | 249 | WP_077879799.1 | hypothetical protein | - |
| HGD79_RS26040 () | 48445..48675 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| HGD79_RS26045 () | 48727..50088 | + | 1362 | WP_000170675.1 | DUF3560 domain-containing protein | - |
| HGD79_RS26050 () | 50136..50699 | + | 564 | WP_112889164.1 | class I SAM-dependent methyltransferase | - |
| HGD79_RS26420 () | 50680..51084 | - | 405 | WP_211086010.1 | pilus protein | - |
| HGD79_RS26060 () | 51567..52097 | + | 531 | WP_032214168.1 | single-stranded DNA-binding protein | - |
| HGD79_RS26065 () | 52153..52386 | + | 234 | WP_000005971.1 | DUF905 domain-containing protein | - |
| HGD79_RS26070 () | 52450..54408 | + | 1959 | WP_168848552.1 | ParB/RepB/Spo0J family partition protein | - |
| HGD79_RS26075 () | 54463..54897 | + | 435 | WP_042634413.1 | conjugation system SOS inhibitor PsiB | - |
| HGD79_RS26080 () | 54894..55613 | + | 720 | WP_168848553.1 | plasmid SOS inhibition protein A | - |
| - () | 55625..55842 | + | 218 | NuclAT_0 | - | - |
| - () | 55625..55842 | + | 218 | NuclAT_0 | - | - |
| - () | 55625..55842 | + | 218 | NuclAT_0 | - | - |
| - () | 55625..55842 | + | 218 | NuclAT_0 | - | - |
| HGD79_RS26085 () | 55888..56049 | + | 162 | WP_000775237.1 | type I toxin-antitoxin system Hok family toxin | - |
| HGD79_RS26425 () | 56287..56646 | - | 360 | Protein_67 | hypothetical protein | - |
| HGD79_RS26095 () | 56870..57166 | + | 297 | WP_001272240.1 | hypothetical protein | - |
| HGD79_RS26100 () | 57272..58093 | + | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| HGD79_RS26105 () | 58390..59037 | - | 648 | WP_162716379.1 | hypothetical protein | VF |
| HGD79_RS26110 () | 59313..59696 | + | 384 | WP_168848554.1 | relaxosome protein TraM | - |
| HGD79_RS26115 () | 59888..60535 | + | 648 | WP_000338012.1 | transcriptional regulator TraJ family protein | - |
| HGD79_RS26120 () | 60643..60882 | + | 240 | WP_042357785.1 | conjugal transfer relaxosome protein TraY | - |
| HGD79_RS26125 () | 60916..61278 | + | 363 | WP_112889070.1 | type IV conjugative transfer system pilin TraA | - |
| HGD79_RS26130 () | 61283..61594 | + | 312 | WP_000012101.1 | type IV conjugative transfer system protein TraL | - |
| HGD79_RS26135 () | 61616..62182 | + | 567 | WP_000399793.1 | type IV conjugative transfer system protein TraE | - |
| HGD79_RS26140 () | 62193..62897 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| HGD79_RS26145 () | 62897..64324 | + | 1428 | WP_000146685.1 | conjugal transfer protein TraB | - |
| HGD79_RS26150 () | 64314..64886 | + | 573 | WP_024179131.1 | conjugal transfer protein TraP | - |
| HGD79_RS26155 () | 64883..65080 | + | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| HGD79_RS26160 () | 65092..65343 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| HGD79_RS26165 () | 65340..65855 | + | 516 | WP_000809906.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HGD79_RS26170 () | 65990..66211 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| HGD79_RS26175 () | 66371..68998 | + | 2628 | WP_001064243.1 | type IV secretion system protein TraC | - |
| HGD79_RS26180 () | 68995..69381 | + | 387 | WP_000214096.1 | type-F conjugative transfer system protein TrbI | - |
| HGD79_RS26185 () | 69378..70010 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| HGD79_RS26190 () | 70007..70999 | + | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| HGD79_RS26195 () | 71025..71486 | + | 462 | WP_000277845.1 | hypothetical protein | - |
| HGD79_RS26200 () | 71516..71968 | + | 453 | WP_000069427.1 | hypothetical protein | - |
| HGD79_RS26205 () | 71996..72634 | + | 639 | WP_001104248.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HGD79_RS26210 () | 72631..74439 | + | 1809 | WP_063078212.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HGD79_RS26215 () | 74466..74726 | + | 261 | WP_000864323.1 | conjugal transfer protein TrbE | - |
| HGD79_RS26220 () | 74719..75462 | + | 744 | WP_168848555.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HGD79_RS26225 () | 75478..75825 | + | 348 | WP_001287893.1 | conjugal transfer protein TrbA | - |
| HGD79_RS26230 () | 75944..76228 | + | 285 | WP_000624108.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HGD79_RS26235 () | 76215..76760 | + | 546 | WP_000059818.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HGD79_RS26240 () | 76690..77064 | + | 375 | WP_071776752.1 | P-type conjugative transfer protein TrbJ | - |
| HGD79_RS26245 () | 77018..77410 | + | 393 | WP_000126338.1 | F-type conjugal transfer protein TrbF | - |
| HGD79_RS26250 () | 77397..78770 | + | 1374 | WP_000944325.1 | conjugal transfer protein TraH | - |
| HGD79_RS26255 () | 78767..81589 | + | 2823 | WP_168848556.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HGD79_RS26260 () | 81604..82107 | + | 504 | WP_000605510.1 | hypothetical protein | - |
| HGD79_RS26265 () | 82139..82870 | + | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| HGD79_RS26270 () | 83073..83810 | + | 738 | WP_000199900.1 | hypothetical protein | - |
| HGD79_RS26275 () | 83861..86059 | + | 2199 | WP_063078211.1 | type IV conjugative transfer system coupling protein TraD | - |
| HGD79_RS26280 () | 86059..91329 | + | 5271 | WP_112907288.1 | Multifunctional conjugation protein TraI | Relaxase |
| HGD79_RS26285 () | 91349..92095 | + | 747 | WP_000205711.1 | conjugal transfer pilus acetylase TraX | - |
| HGD79_RS26290 () | 92154..93014 | + | 861 | WP_000704522.1 | putative protein YcjY | VF |
| HGD79_RS26295 () | 93117..93677 | + | 561 | WP_000840464.1 | fertility inhibition protein FinO | - |
| HGD79_RS26300 () | 93808..94017 | + | 210 | WP_001297500.1 | hypothetical protein | - |
| HGD79_RS26305 () | 94429..95055 | + | 627 | WP_000794191.1 | hypothetical protein | - |
| HGD79_RS26310 () | 95207..95797 | + | 591 | WP_001375082.1 | DUF2726 domain-containing protein | - |
| HGD79_RS26315 () | 96037..96285 | + | 249 | WP_000083839.1 | replication regulatory protein RepA | - |
| HGD79_RS26320 () | 96530..96595 | + | 66 | Protein_113 | RepA leader peptide Tap | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|