MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 94046 bp
Accession: NZ_CP051377 Location: 1..94046 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain CVM 24362 Replicon: plasmid p24362-2
Accession: NZ_CP051377 Location: 1..94046 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain CVM 24362 Replicon: plasmid p24362-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HFS07_RS00025 () | 582..1052 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| HFS07_RS00030 () | 1045..1401 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| HFS07_RS00035 () | 1783..2463 | + | 681 | WP_000088645.1 | DNA methylase | - |
| HFS07_RS00040 () | 2463..2684 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| HFS07_RS00045 () | 2740..3153 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| HFS07_RS00050 () | 3225..3989 | + | 765 | WP_001246548.1 | membrane protein | - |
| HFS07_RS00055 () | 4485..4919 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| HFS07_RS00060 () | 4986..5420 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| HFS07_RS00065 () | 5656..5979 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| HFS07_RS00070 () | 5943..6200 | + | 258 | WP_126834987.1 | hypothetical protein | - |
| HFS07_RS00075 () | 6794..7312 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| HFS07_RS00080 () | 7367..7609 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| HFS07_RS00085 () | 7678..9675 | + | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| HFS07_RS00090 () | 9715..10149 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| HFS07_RS00095 () | 10146..10883 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| HFS07_RS00100 () | 11132..11290 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| HFS07_RS00105 () | 11393..12211 | + | 819 | Protein_17 | DUF945 domain-containing protein | - |
| HFS07_RS00110 () | 12522..12992 | - | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| HFS07_RS00115 () | 13407..13787 | + | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| HFS07_RS00120 () | 13980..14666 | + | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| HFS07_RS00125 () | 14761..14988 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| HFS07_RS00130 () | 15030..15392 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| HFS07_RS00135 () | 15407..15718 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| HFS07_RS00140 () | 15740..16306 | + | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| HFS07_RS00145 () | 16293..17033 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| HFS07_RS00150 () | 17033..18454 | + | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| HFS07_RS00155 () | 18444..19040 | + | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| HFS07_RS00160 () | 19018..19263 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| HFS07_RS00165 () | 19260..19775 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HFS07_RS00170 () | 19910..20131 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| HFS07_RS00175 () | 20124..20591 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| HFS07_RS00180 () | 20708..20971 | + | 264 | WP_001239256.1 | hypothetical protein | - |
| HFS07_RS00185 () | 20987..23635 | + | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| HFS07_RS00190 () | 23610..23996 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| HFS07_RS00195 () | 23993..24625 | + | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| HFS07_RS00200 () | 24622..25614 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| HFS07_RS00205 () | 25633..25941 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| HFS07_RS00210 () | 25926..26564 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HFS07_RS00215 () | 26601..27020 | + | 420 | WP_001229397.1 | HNH endonuclease | - |
| HFS07_RS00220 () | 27017..28843 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HFS07_RS00225 () | 28854..29069 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| HFS07_RS00230 () | 29081..29830 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HFS07_RS00235 () | 30044..30337 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HFS07_RS00240 () | 30324..30872 | + | 549 | WP_022743183.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HFS07_RS00245 () | 30862..32244 | + | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| HFS07_RS00250 () | 32241..35063 | + | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HFS07_RS00255 () | 35079..35573 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| HFS07_RS00260 () | 35609..36340 | + | 732 | WP_022743186.1 | complement resistance protein TraT | - |
| HFS07_RS00265 () | 36717..38978 | + | 2262 | WP_022743189.1 | type IV conjugative transfer system coupling protein TraD | - |
| HFS07_RS00270 () | 38987..39385 | - | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| HFS07_RS00275 () | 39385..39612 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| HFS07_RS00280 () | 39694..44952 | + | 5259 | WP_022743192.1 | conjugative transfer relaxase/helicase TraI | - |
| HFS07_RS00285 () | 44972..45712 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| HFS07_RS00290 () | 45767..46330 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| HFS07_RS00295 () | 46445..46729 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| HFS07_RS00300 () | 46742..46897 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| HFS07_RS00305 () | 47063..47505 | + | 443 | Protein_57 | phospholipase | - |
| HFS07_RS00310 () | 47684..47950 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| HFS07_RS00315 () | 48200..48277 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| HFS07_RS00320 () | 48258..49139 | + | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| HFS07_RS00325 () | 49999..50220 | + | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| HFS07_RS00330 () | 50317..51075 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| HFS07_RS00335 () | 51342..51899 | - | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| HFS07_RS00340 () | 51989..52888 | - | 900 | WP_010999938.1 | YjiK family protein | - |
| HFS07_RS00345 () | 52885..53031 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| HFS07_RS00350 () | 53021..53674 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| HFS07_RS00355 () | 53919..54269 | - | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| HFS07_RS00360 () | 54254..54466 | - | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| HFS07_RS00365 () | 54898..55773 | - | 876 | WP_014343944.1 | hypothetical protein | - |
| HFS07_RS00370 () | 56026..56583 | - | 558 | WP_010999940.1 | membrane protein | - |
| HFS07_RS00375 () | 56598..57290 | - | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| HFS07_RS00380 () | 57283..59691 | - | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| HFS07_RS00385 () | 59919..60437 | - | 519 | WP_000748205.1 | major pilin PefA | - |
| HFS07_RS00390 () | 60712..61014 | - | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| HFS07_RS00395 () | 61733..62114 | + | 382 | Protein_75 | YgiW/YdeI family stress tolerance OB fold protein | - |
| HFS07_RS00400 () | 62283..62727 | + | 445 | Protein_76 | site-specific integrase | - |
| HFS07_RS00405 () | 62986..63975 | - | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| HFS07_RS00410 () | 64469..64765 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| HFS07_RS00415 () | 65249..65770 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| HFS07_RS00420 () | 66446..66664 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| HFS07_RS00425 () | 66666..66971 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| HFS07_RS00430 () | 66973..67263 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| HFS07_RS00435 () | 67260..67781 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| HFS07_RS00440 () | 67816..68598 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| HFS07_RS00445 () | 68607..69320 | + | 714 | Protein_85 | EAL domain-containing protein | - |
| HFS07_RS00450 () | 69324..69833 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| HFS07_RS00455 () | 69827..70312 | + | 486 | WP_000905606.1 | membrane protein | - |
| HFS07_RS00460 () | 70589..70876 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| HFS07_RS00465 () | 71032..71592 | + | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| HFS07_RS00470 () | 71659..72009 | - | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| HFS07_RS00475 () | 72066..72490 | + | 425 | Protein_91 | IS200/IS605 family transposase | - |
| HFS07_RS00480 () | 72617..73267 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| HFS07_RS00485 () | 73528..74253 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| HFS07_RS00490 () | 74534..76309 | - | 1776 | WP_001676648.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| HFS07_RS00495 () | 76361..76528 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| HFS07_RS00500 () | 76491..77258 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| HFS07_RS00505 () | 77432..77596 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| HFS07_RS00510 () | 77770..78663 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| HFS07_RS00515 () | 79272..80309 | + | 1038 | WP_001121399.1 | IS630 family transposase | - |
| HFS07_RS00520 () | 80498..81523 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| HFS07_RS00525 () | 81456..83120 | - | 1665 | WP_000098783.1 | IS481 family transposase | - |
| HFS07_RS00530 () | 83104..83664 | - | 561 | WP_001240331.1 | recombinase family protein | - |
| HFS07_RS00535 () | 83871..84611 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| HFS07_RS00540 () | 85266..85754 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| HFS07_RS00545 () | 86013..87128 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| HFS07_RS00550 () | 87214..87630 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| HFS07_RS00555 () | 87814..88149 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| HFS07_RS00560 () | 88206..88772 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| HFS07_RS00565 () | 88804..89745 | - | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| HFS07_RS00570 () | 90160..91365 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| HFS07_RS00575 () | 91365..92339 | + | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| HFS07_RS00580 () | 92421..93695 | - | 1275 | WP_022743179.1 | Y-family DNA polymerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|