MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 170909 bp
Accession: NZ_CP051298 Location: 446741..617649 Organism: Alicycliphilus denitrificans strain DP3 Replicon: chromosome
Accession: NZ_CP051298 Location: 446741..617649 Organism: Alicycliphilus denitrificans strain DP3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF896_RS02355 () | 442470..443051 | + | 582 | WP_013517369.1 | DUF4390 domain-containing protein | - |
| HF896_RS02360 () | 443048..445336 | + | 2289 | WP_013517370.1 | HAMP domain-containing protein | - |
| HF896_RS02365 () | 445376..446071 | + | 696 | WP_013517371.1 | response regulator | - |
| HF896_RS22500 () | 446441..447925 | + | 1485 | WP_174764490.1 | site-specific integrase | - |
| HF896_RS02380 () | 448569..448793 | - | 225 | WP_168727613.1 | helix-turn-helix domain-containing protein | - |
| HF896_RS02385 () | 448972..449286 | - | 315 | WP_168727614.1 | single-stranded DNA-binding protein | - |
| HF896_RS02390 () | 449354..450001 | - | 648 | WP_168727615.1 | hypothetical protein | - |
| HF896_RS02395 () | 450104..451330 | - | 1227 | WP_174764491.1 | hypothetical protein | - |
| HF896_RS02400 () | 452299..453825 | + | 1527 | WP_168727616.1 | IS21 family transposase ISAzo12 | Transposase |
| HF896_RS02405 () | 453843..454631 | + | 789 | WP_168727617.1 | IS21 family transposase ISAzo12 | Transposase |
| HF896_RS02410 () | 454829..455449 | + | 621 | WP_168727618.1 | hypothetical protein | - |
| HF896_RS02415 () | 455593..456219 | + | 627 | WP_168727619.1 | hypothetical protein | - |
| HF896_RS02420 () | 456443..456940 | + | 498 | WP_168727620.1 | hypothetical protein | - |
| HF896_RS02425 () | 457006..458400 | + | 1395 | WP_168727621.1 | hypothetical protein | - |
| HF896_RS02430 () | 458661..458807 | + | 147 | WP_168727622.1 | hypothetical protein | - |
| HF896_RS02435 () | 459223..460503 | + | 1281 | WP_168727623.1 | DNA primase | - |
| HF896_RS02440 () | 461080..461781 | - | 702 | WP_168727624.1 | hypothetical protein | - |
| HF896_RS02445 () | 462025..467343 | + | 5319 | WP_168728161.1 | DEAD/DEAH box helicase | - |
| HF896_RS02450 () | 467340..468209 | + | 870 | WP_168727625.1 | ImmA/IrrE family metallo-endopeptidase | - |
| HF896_RS02455 () | 468274..471036 | + | 2763 | WP_168728162.1 | DEAD/DEAH box helicase | - |
| HF896_RS02460 () | 471039..475667 | + | 4629 | WP_168727626.1 | N-6 DNA methylase | - |
| HF896_RS02465 () | 475683..477017 | + | 1335 | WP_168727627.1 | deoxyguanosinetriphosphate triphosphohydrolase | - |
| HF896_RS02470 () | 477055..477972 | + | 918 | WP_168727628.1 | hypothetical protein | - |
| HF896_RS02475 () | 478033..479316 | + | 1284 | WP_168727629.1 | ATP-binding protein | - |
| HF896_RS02480 () | 479306..479989 | + | 684 | WP_168727630.1 | RloB family protein | - |
| HF896_RS02485 () | 480259..480708 | + | 450 | WP_168728163.1 | HNH endonuclease | - |
| HF896_RS02490 () | 480878..481480 | + | 603 | WP_174764539.1 | hypothetical protein | - |
| HF896_RS02495 () | 481600..482106 | - | 507 | WP_168727631.1 | hypothetical protein | - |
| HF896_RS02500 () | 482346..482771 | + | 426 | WP_168727632.1 | hypothetical protein | - |
| HF896_RS02505 () | 482830..483783 | + | 954 | WP_168727633.1 | hypothetical protein | - |
| HF896_RS02510 () | 483879..485573 | - | 1695 | WP_168727634.1 | hypothetical protein | - |
| HF896_RS02515 () | 486738..488045 | + | 1308 | WP_168727635.1 | Prophage integrase IntA ; Integrase | Integrase |
| HF896_RS02520 () | 488126..488506 | + | 381 | WP_168727636.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HF896_RS02525 () | 488487..488822 | + | 336 | WP_168727637.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| HF896_RS02530 () | 488809..489120 | - | 312 | WP_168727638.1 | AlpA family phage regulatory protein | - |
| HF896_RS02535 () | 489544..489690 | - | 147 | WP_168727639.1 | hypothetical protein | - |
| HF896_RS02540 () | 489689..490012 | + | 324 | WP_168727640.1 | ATPase | - |
| HF896_RS02545 () | 490155..490523 | - | 369 | WP_168727641.1 | DUF2513 domain-containing protein | - |
| HF896_RS02550 () | 490495..491514 | - | 1020 | WP_168727642.1 | reverse transcriptase family protein | - |
| HF896_RS02555 () | 491480..491785 | - | 306 | WP_168727643.1 | hypothetical protein | VF |
| HF896_RS02560 () | 491838..492077 | - | 240 | WP_168727644.1 | hypothetical protein | - |
| HF896_RS02565 () | 493012..493839 | + | 828 | WP_168727645.1 | DUF945 domain-containing protein | - |
| HF896_RS02570 () | 493916..495955 | + | 2040 | WP_168727646.1 | ParB/RepB/Spo0J family partition protein | - |
| HF896_RS02575 () | 496092..497195 | - | 1104 | WP_059400200.1 | IS5 family transposase ISAzo41 | Transposase |
| HF896_RS02580 () | 497319..497528 | + | 210 | WP_168727647.1 | hypothetical protein | - |
| HF896_RS02585 () | 497660..498178 | - | 519 | WP_168727648.1 | N-acetyltransferase | - |
| HF896_RS02590 () | 498986..499300 | + | 315 | WP_168727649.1 | DUF736 domain-containing protein | - |
| HF896_RS02595 () | 499979..501019 | + | 1041 | WP_168727650.1 | DnaJ domain-containing protein | - |
| HF896_RS02600 () | 501315..502580 | - | 1266 | WP_146914178.1 | IS256 family transposase ISCARN45 | Transposase |
| HF896_RS02605 () | 503010..503303 | - | 294 | WP_168727651.1 | helix-turn-helix domain-containing protein | - |
| HF896_RS02610 () | 503435..504669 | + | 1235 | WP_148663168.1 | IS3 family transposase ISStma17 | Transposase |
| HF896_RS02615 () | 504856..505203 | + | 348 | WP_168727652.1 | DUF2958 domain-containing protein | - |
| HF896_RS02620 () | 505544..506293 | + | 750 | WP_168728165.1 | DUF2285 domain-containing protein | - |
| HF896_RS02625 () | 506377..506658 | + | 282 | WP_168727653.1 | helix-turn-helix domain-containing protein | - |
| HF896_RS02630 () | 506673..507518 | + | 846 | WP_168727654.1 | replication initiator protein A | - |
| HF896_RS02640 () | 507808..508446 | + | 639 | WP_168727655.1 | Chromosome-partitioning ATPase Soj | VF |
| HF896_RS02645 () | 508443..508727 | + | 285 | WP_059401222.1 | hypothetical protein | - |
| HF896_RS02650 () | 508724..509269 | + | 546 | WP_168727656.1 | DUF2840 domain-containing protein | - |
| HF896_RS02655 () | 509266..509865 | + | 600 | WP_168727657.1 | S26 family signal peptidase | - |
| HF896_RS02660 () | 510326..512323 | + | 1998 | WP_168727658.1 | relaxase/mobilization nuclease and DUF3363 domain-containing protein | - |
| HF896_RS02665 () | 512522..514192 | - | 1671 | WP_168727659.1 | multicopper oxidase domain-containing protein | - |
| HF896_RS02670 () | 514636..514983 | - | 348 | WP_168727660.1 | DUF4148 domain-containing protein | - |
| HF896_RS02675 () | 515115..516518 | - | 1404 | WP_103045647.1 | heavy metal sensor histidine kinase | - |
| HF896_RS02680 () | 516519..517202 | - | 684 | WP_024537123.1 | Transcriptional activator protein CopR | VF |
| HF896_RS02685 () | 517327..519186 | + | 1860 | WP_168727661.1 | copper resistance system multicopper oxidase | - |
| HF896_RS02690 () | 519621..520391 | + | 771 | WP_084301158.1 | copper resistance protein B | - |
| HF896_RS02695 () | 520414..520920 | + | 507 | WP_024537126.1 | cupredoxin family protein | - |
| HF896_RS02700 () | 520975..521316 | + | 342 | WP_024537127.1 | copper-binding protein | - |
| HF896_RS02705 () | 521392..521862 | + | 471 | WP_168727662.1 | hypothetical protein | - |
| HF896_RS02710 () | 521873..522151 | + | 279 | WP_168727663.1 | DUF2933 domain-containing protein | - |
| HF896_RS02715 () | 522156..522803 | + | 648 | WP_168727664.1 | isoprenylcysteine carboxylmethyltransferase family protein | - |
| HF896_RS02720 () | 522859..523362 | + | 504 | WP_168727665.1 | cytochrome c | - |
| HF896_RS02725 () | 523457..525319 | + | 1863 | WP_168727666.1 | DUF3141 domain-containing protein | - |
| HF896_RS02730 () | 525456..527849 | + | 2394 | WP_168727667.1 | copper-translocating P-type ATPase | - |
| HF896_RS02735 () | 527885..528145 | + | 261 | WP_168727668.1 | DUF805 domain-containing protein | - |
| HF896_RS02740 () | 528267..528725 | + | 459 | WP_168727669.1 | hypothetical protein | - |
| HF896_RS02745 () | 528861..530117 | + | 1257 | WP_168727670.1 | TolC family protein | - |
| HF896_RS02750 () | 530132..531613 | + | 1482 | WP_168727671.1 | efflux RND transporter periplasmic adaptor subunit | - |
| HF896_RS02755 () | 531610..534729 | + | 3120 | WP_168727672.1 | efflux RND transporter permease subunit | - |
| HF896_RS02760 () | 534755..535741 | + | 987 | WP_168727673.1 | Hca operon transcriptional activator HcaR | VF |
| HF896_RS02770 () | 536910..537833 | + | 924 | Protein_489 | hypothetical protein | VF |
| HF896_RS02775 () | 537830..538294 | + | 465 | WP_168727675.1 | ribbon-helix-helix protein, CopG family | - |
| HF896_RS02780 () | 538291..539340 | + | 1050 | WP_168727676.1 | hypothetical protein | VF |
| HF896_RS02785 () | 539337..539723 | + | 387 | WP_003056137.1 | TrbC/VirB2 family protein | - |
| HF896_RS02790 () | 539720..539992 | + | 273 | WP_168727677.1 | VirB3 family type IV secretion system protein | - |
| HF896_RS02795 () | 540008..542467 | + | 2460 | WP_168727678.1 | conjugal transfer protein TrbE | - |
| HF896_RS02800 () | 542464..543219 | + | 756 | WP_168727679.1 | P-type conjugative transfer protein TrbJ | - |
| HF896_RS02805 () | 543231..544589 | + | 1359 | WP_168727680.1 | P-type conjugative transfer protein TrbL | - |
| HF896_RS02810 () | 544601..545305 | + | 705 | WP_168727681.1 | conjugal transfer protein TrbF | - |
| HF896_RS02815 () | 545302..546294 | + | 993 | WP_168727682.1 | P-type conjugative transfer protein TrbG | - |
| HF896_RS02820 () | 546297..547568 | + | 1272 | WP_168727683.1 | hypothetical protein | VF |
| HF896_RS02825 () | 547565..547788 | + | 224 | Protein_500 | DUF2274 domain-containing protein | - |
| HF896_RS02830 () | 548048..548941 | - | 894 | WP_168727684.1 | ThiF family adenylyltransferase | - |
| HF896_RS02835 () | 548928..549446 | - | 519 | WP_168727685.1 | hypothetical protein | - |
| HF896_RS02840 () | 549443..549772 | - | 330 | WP_168727686.1 | hypothetical protein | - |
| HF896_RS02845 () | 549769..550476 | - | 708 | WP_168727687.1 | multiubiquitin domain-containing protein | - |
| HF896_RS02850 () | 550716..551270 | - | 555 | WP_168727688.1 | DNA-binding protein | - |
| HF896_RS02855 () | 551296..552231 | - | 936 | WP_168727689.1 | hypothetical protein | - |
| HF896_RS02860 () | 552233..552808 | - | 576 | WP_168727690.1 | PIN domain-containing protein | - |
| HF896_RS02865 () | 552809..553273 | - | 465 | WP_168727691.1 | helix-turn-helix domain-containing protein | - |
| HF896_RS02870 () | 554300..554752 | - | 453 | WP_081471063.1 | CoA transferase | - |
| HF896_RS02875 () | 554761..554997 | + | 237 | WP_148238004.1 | hypothetical protein | - |
| HF896_RS02880 () | 555012..556352 | - | 1341 | WP_013517380.1 | UDP-N-acetyl-D-mannosamine dehydrogenase | VF |
| HF896_RS02885 () | 556349..557359 | - | 1011 | WP_168727692.1 | GDP-L-fucose synthase | VF |
| HF896_RS02890 () | 557356..558873 | - | 1518 | WP_168727693.1 | glycosyltransferase family 39 protein | - |
| HF896_RS02895 () | 558977..559942 | + | 966 | Protein_514 | glycosyltransferase family 2 protein | - |
| HF896_RS02900 () | 560005..560928 | + | 924 | WP_168727694.1 | flippase-like domain-containing protein | - |
| HF896_RS02905 () | 560925..561842 | - | 918 | WP_168727695.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| HF896_RS02910 () | 561842..562240 | + | 399 | WP_013721280.1 | YraN family protein | - |
| HF896_RS02915 () | 562301..562903 | + | 603 | WP_013517387.1 | DnaA initiator-associating protein DiaA | VF |
| HF896_RS02920 () | 562900..563565 | + | 666 | WP_013517388.1 | BON domain-containing protein | - |
| HF896_RS02925 () | 563594..564526 | - | 933 | WP_013517389.1 | NAD(P)-dependent oxidoreductase | - |
| HF896_RS02930 () | 564607..565743 | - | 1137 | WP_013517390.1 | hypothetical protein | VF |
| HF896_RS02935 () | 565769..566398 | - | 630 | WP_013517391.1 | cyclic nucleotide-binding domain-containing protein | - |
| HF896_RS02940 () | 566463..567506 | - | 1044 | WP_013517392.1 | hypothetical protein | VF |
| HF896_RS02945 () | 567546..568268 | + | 723 | WP_059401616.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| HF896_RS02950 () | 568309..569439 | + | 1131 | WP_059401617.1 | alanine--glyoxylate aminotransferase family protein | - |
| HF896_RS02955 () | 569500..569922 | - | 423 | WP_013517395.1 | hypothetical protein | - |
| HF896_RS02960 () | 570107..571413 | + | 1307 | Protein_527 | DUF445 domain-containing protein | - |
| HF896_RS02965 () | 571471..572964 | - | 1494 | WP_059401618.1 | FAD-binding protein | - |
| HF896_RS02970 () | 573031..573927 | - | 897 | WP_013517398.1 | HTH-type transcriptional regulator ArgP | VF |
| HF896_RS02975 () | 573927..574775 | - | 849 | WP_059401619.1 | formyltetrahydrofolate deformylase | - |
| HF896_RS02980 () | 574821..577487 | + | 2667 | WP_059401620.1 | hypothetical protein | VF |
| HF896_RS02985 () | 577488..578348 | - | 861 | WP_059401634.1 | ChaN family lipoprotein | - |
| HF896_RS02990 () | 578615..581050 | + | 2436 | WP_013517402.1 | adenosylcobalamin-dependent ribonucleoside-diphosphate reductase | - |
| HF896_RS02995 () | 581229..583145 | + | 1917 | WP_013517403.1 | type IV pili methyl-accepting chemotaxis transducer N-terminal domain-containing protein | - |
| HF896_RS03000 () | 583142..583816 | + | 675 | WP_013517404.1 | Chemotaxis response regulator protein-glutamate methylesterase | VF |
| HF896_RS03005 () | 584045..585340 | + | 1296 | WP_013517405.1 | NarK/NasA family nitrate transporter | - |
| HF896_RS03010 () | 585359..586804 | + | 1446 | WP_013517406.1 | NarK family nitrate/nitrite MFS transporter | - |
| HF896_RS03015 () | 586841..590635 | + | 3795 | WP_013517407.1 | nitrate reductase subunit alpha | - |
| HF896_RS03020 () | 590654..592177 | + | 1524 | WP_013517408.1 | nitrate reductase subunit beta | - |
| HF896_RS03025 () | 592189..592890 | + | 702 | WP_013517409.1 | nitrate reductase molybdenum cofactor assembly chaperone | - |
| HF896_RS03030 () | 592887..593615 | + | 729 | WP_013517410.1 | respiratory nitrate reductase subunit gamma | - |
| HF896_RS03035 () | 593743..594570 | + | 828 | WP_013517411.1 | peptidylprolyl isomerase | - |
| HF896_RS03040 () | 594605..595282 | + | 678 | WP_013517412.1 | carbonic anhydrase | - |
| HF896_RS03045 () | 595282..595932 | + | 651 | WP_013517413.1 | nitroreductase family protein | - |
| HF896_RS03050 () | 595929..596348 | + | 420 | WP_013517414.1 | hypothetical protein | - |
| HF896_RS03055 () | 596402..596950 | + | 549 | WP_013517415.1 | hemerythrin domain-containing protein | - |
| HF896_RS03060 () | 597140..597427 | - | 288 | WP_013517416.1 | DUF3567 domain-containing protein | - |
| HF896_RS03065 () | 597561..598712 | - | 1152 | WP_013517417.1 | DUF3108 domain-containing protein | - |
| HF896_RS03070 () | 598894..599883 | + | 990 | WP_013517418.1 | fumarylacetoacetate hydrolase family protein | - |
| HF896_RS03075 () | 600040..602244 | + | 2205 | WP_013517419.1 | glycosyltransferase family 41 protein | - |
| HF896_RS03080 () | 602305..604380 | - | 2076 | WP_168727696.1 | molybdopterin oxidoreductase family protein | - |
| HF896_RS03085 () | 604502..605533 | - | 1032 | WP_013517421.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| HF896_RS03090 () | 605574..606482 | - | 909 | WP_013517422.1 | CoA ester lyase | - |
| HF896_RS03095 () | 606498..607730 | - | 1233 | WP_013517423.1 | CoA transferase | - |
| HF896_RS03100 () | 607727..608230 | - | 504 | WP_013517424.1 | MaoC family dehydratase | - |
| HF896_RS03105 () | 608227..609477 | - | 1251 | WP_013517425.1 | Acyl-CoA dehydrogenase | VF |
| HF896_RS03110 () | 609482..609985 | - | 504 | WP_013517426.1 | MaoC family dehydratase | - |
| HF896_RS03115 () | 609982..611361 | - | 1380 | WP_013517427.1 | MmgE/PrpD family protein | - |
| HF896_RS03120 () | 611567..612442 | + | 876 | WP_013517428.1 | CoA ester lyase | - |
| HF896_RS03125 () | 612449..613207 | + | 759 | WP_013517429.1 | helix-turn-helix domain-containing protein | - |
| HF896_RS03130 () | 613309..614514 | + | 1206 | WP_103018013.1 | amidohydrolase | - |
| HF896_RS03135 () | 614583..614840 | + | 258 | WP_013517431.1 | acyl-CoA-binding protein | - |
| HF896_RS03140 () | 614843..615946 | - | 1104 | WP_013517432.1 | aminopeptidase | - |
| HF896_RS03145 () | 615953..616612 | + | 660 | WP_013517433.1 | DNA-3-methyladenine glycosylase I | - |
| HF896_RS03150 () | 616746..616907 | - | 162 | WP_013517434.1 | hypothetical protein | - |
| HF896_RS03155 () | 617188..618486 | + | 1299 | WP_013517435.1 | class I SAM-dependent methyltransferase | - |
| HF896_RS03160 () | 618508..618828 | + | 321 | WP_103018015.1 | DUF1840 domain-containing protein | - |
| HF896_RS03165 () | 618851..619867 | - | 1017 | WP_103018016.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| HF896_RS03170 () | 620010..620999 | - | 990 | WP_013517438.1 | hypothetical protein | - |
| HF896_RS03175 () | 621126..622373 | - | 1248 | WP_103018017.1 | AMP-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|