MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 129430 bp
Accession: NZ_CP051298 Location: 4173379..4302808 Organism: Alicycliphilus denitrificans strain DP3 Replicon: chromosome
Accession: NZ_CP051298 Location: 4173379..4302808 Organism: Alicycliphilus denitrificans strain DP3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF896_RS19970 () | 4168534..4168716 | - | 183 | WP_013520738.1 | 50S ribosomal protein L30 | - |
| HF896_RS19975 () | 4168729..4169250 | - | 522 | WP_013520739.1 | 30S ribosomal protein S5 | - |
| HF896_RS19980 () | 4169266..4169631 | - | 366 | WP_013520740.1 | 50S ribosomal protein L18 | - |
| HF896_RS19985 () | 4169643..4170176 | - | 534 | WP_013520741.1 | 50S ribosomal protein L6 | - |
| HF896_RS19990 () | 4170201..4170596 | - | 396 | WP_013520742.1 | 30S ribosomal protein S8 | - |
| HF896_RS19995 () | 4170618..4170923 | - | 306 | WP_011803856.1 | 30S ribosomal protein S14 | - |
| HF896_RS20000 () | 4170933..4171472 | - | 540 | WP_013723137.1 | 50S ribosomal protein L5 | - |
| HF896_RS20005 () | 4171482..4171802 | - | 321 | WP_168728105.1 | 50S ribosomal protein L24 | - |
| HF896_RS20010 () | 4171813..4172181 | - | 369 | WP_013520745.1 | 50S ribosomal protein L14 | - |
| HF896_RS20015 () | 4172389..4173987 | - | 1599 | WP_013723138.1 | glycerol-3-phosphate dehydrogenase/oxidase | - |
| HF896_RS20020 () | 4174110..4174871 | + | 762 | WP_013520747.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| HF896_RS20025 () | 4174894..4176399 | + | 1506 | WP_013520748.1 | glycerol kinase GlpK | - |
| HF896_RS20030 () | 4176556..4177395 | + | 840 | WP_013520749.1 | pyrroline-5-carboxylate reductase | - |
| HF896_RS20035 () | 4177495..4179279 | + | 1785 | WP_013520750.1 | CotH kinase family protein | - |
| HF896_RS20040 () | 4179358..4180230 | - | 873 | WP_013520751.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| HF896_RS20045 () | 4180318..4180842 | - | 525 | WP_013520752.1 | DNA starvation/stationary phase protection protein | - |
| HF896_RS20050 () | 4180981..4181946 | - | 966 | WP_013520753.1 | LysR family transcriptional regulator | - |
| HF896_RS20055 () | 4181992..4184109 | - | 2118 | WP_013520754.1 | ATP-dependent DNA helicase RecG | - |
| HF896_RS20060 () | 4184286..4185551 | + | 1266 | WP_013520755.1 | HD-GYP domain-containing protein | - |
| HF896_RS20065 () | 4185640..4186743 | + | 1104 | WP_013520756.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HF896_RS20070 () | 4186891..4187772 | + | 882 | WP_013520757.1 | DMT family transporter | - |
| HF896_RS20075 () | 4187831..4189438 | - | 1608 | WP_013520758.1 | gamma-glutamyltransferase family protein | - |
| HF896_RS20080 () | 4189444..4190406 | - | 963 | WP_013520759.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| HF896_RS20085 () | 4190533..4191438 | + | 906 | WP_013520760.1 | LysR family transcriptional regulator | - |
| HF896_RS20090 () | 4191447..4192163 | - | 717 | WP_013520761.1 | uracil-DNA glycosylase | - |
| HF896_RS20095 () | 4192224..4193024 | - | 801 | WP_013520762.1 | indole-3-glycerol phosphate synthase TrpC | - |
| HF896_RS20100 () | 4193031..4193183 | - | 153 | WP_013520763.1 | hypothetical protein | - |
| HF896_RS20105 () | 4193180..4194211 | - | 1032 | WP_013520764.1 | anthranilate phosphoribosyltransferase | - |
| HF896_RS20110 () | 4194211..4194780 | - | 570 | WP_168728106.1 | Carbamoyl-phosphate synthase small chain | VF |
| HF896_RS20115 () | 4195939..4196685 | + | 747 | WP_107220025.1 | hypothetical protein | - |
| HF896_RS20120 () | 4196804..4197016 | + | 213 | WP_107220024.1 | AlpA family transcriptional regulator | - |
| HF896_RS20125 () | 4197059..4197934 | + | 876 | WP_107220023.1 | Iron-sulfur cluster carrier protein | VF |
| HF896_RS20130 () | 4197918..4198178 | + | 261 | WP_107220022.1 | hypothetical protein | - |
| HF896_RS20135 () | 4198171..4199817 | + | 1647 | WP_107220021.1 | ParB N-terminal domain-containing protein | - |
| HF896_RS20140 () | 4199833..4200393 | + | 561 | WP_107220020.1 | DUF2857 domain-containing protein | - |
| HF896_RS20145 () | 4200397..4201611 | + | 1215 | WP_107220019.1 | hypothetical protein | - |
| HF896_RS20150 () | 4202053..4202853 | + | 801 | WP_107220018.1 | TIGR03761 family integrating conjugative element protein | - |
| HF896_RS20155 () | 4202850..4203377 | + | 528 | WP_107220017.1 | DUF3158 family protein | - |
| HF896_RS20160 () | 4203451..4203891 | + | 441 | WP_107220016.1 | single-stranded DNA-binding protein | - |
| HF896_RS20165 () | 4204169..4206190 | + | 2022 | WP_107220015.1 | DNA topoisomerase III | - |
| HF896_RS20170 () | 4206706..4208313 | + | 1608 | WP_107220014.1 | DNA cytosine methyltransferase | - |
| HF896_RS20175 () | 4208557..4209114 | + | 558 | WP_168728107.1 | hypothetical protein | - |
| HF896_RS20180 () | 4209447..4209659 | + | 213 | WP_087746539.1 | hypothetical protein | - |
| HF896_RS20185 () | 4209681..4210073 | + | 393 | WP_107220012.1 | hypothetical protein | - |
| HF896_RS20190 () | 4210249..4210935 | + | 687 | WP_107220011.1 | hypothetical protein | - |
| HF896_RS20195 () | 4211016..4211753 | + | 738 | WP_135149596.1 | ABC transporter substrate-binding protein | - |
| HF896_RS20200 () | 4211848..4212126 | + | 279 | WP_135149595.1 | uridylate kinase | - |
| HF896_RS20205 () | 4212409..4213218 | + | 810 | WP_135149320.1 | GTPase | - |
| HF896_RS20210 () | 4213215..4213433 | + | 219 | WP_135149321.1 | hypothetical protein | - |
| HF896_RS20215 () | 4213526..4213879 | + | 354 | WP_135149322.1 | DUF3085 domain-containing protein | - |
| HF896_RS20220 () | 4214029..4214871 | + | 843 | WP_135149323.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| HF896_RS20225 () | 4214876..4215385 | + | 510 | WP_172205606.1 | hypothetical protein | - |
| HF896_RS20230 () | 4215650..4216567 | + | 918 | WP_060853092.1 | DUF3577 domain-containing protein | - |
| HF896_RS20235 () | 4216624..4217313 | + | 690 | WP_151609211.1 | DUF3275 family protein | - |
| HF896_RS20240 () | 4217406..4217747 | + | 342 | Protein_3919 | hypothetical protein | - |
| HF896_RS20245 () | 4217850..4218243 | + | 394 | Protein_3920 | hypothetical protein | - |
| HF896_RS20250 () | 4218260..4218520 | + | 261 | WP_168728108.1 | hypothetical protein | - |
| HF896_RS20255 () | 4218597..4219244 | + | 648 | WP_168728109.1 | hypothetical protein | - |
| HF896_RS20260 () | 4219309..4220418 | + | 1110 | WP_168728110.1 | class I SAM-dependent methyltransferase | - |
| HF896_RS20265 () | 4220469..4220789 | + | 321 | WP_003116818.1 | hypothetical protein | - |
| HF896_RS20270 () | 4220879..4221184 | + | 306 | WP_135149892.1 | hypothetical protein | - |
| HF896_RS20275 () | 4221321..4223600 | + | 2280 | WP_168728111.1 | DEAD/DEAH box helicase | - |
| HF896_RS20280 () | 4223826..4224353 | - | 528 | WP_151609206.1 | GrpB family protein | - |
| HF896_RS20285 () | 4224796..4225380 | + | 585 | WP_151609205.1 | hypothetical protein | VF |
| HF896_RS20290 () | 4225377..4226021 | + | 645 | WP_168728112.1 | hypothetical protein | - |
| HF896_RS20295 () | 4226036..4226761 | + | 726 | WP_151609203.1 | TIGR03759 family integrating conjugative element protein | - |
| HF896_RS20300 () | 4226743..4227333 | + | 591 | WP_151609202.1 | hypothetical protein | VF |
| HF896_RS20305 () | 4227330..4227878 | + | 549 | WP_151609201.1 | integrating conjugative element protein | - |
| HF896_RS20310 () | 4227883..4230075 | + | 2193 | WP_168728113.1 | type IV conjugative transfer system coupling protein TraD | - |
| HF896_RS20315 () | 4230072..4230821 | + | 750 | WP_151609199.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| HF896_RS20320 () | 4230920..4231303 | + | 384 | WP_088138674.1 | RAQPRD family integrative conjugative element protein | - |
| HF896_RS20325 () | 4231300..4231533 | + | 234 | WP_053817027.1 | TIGR03758 family integrating conjugative element protein | - |
| HF896_RS20330 () | 4231550..4231909 | + | 360 | WP_088138678.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| HF896_RS20335 () | 4231922..4232332 | + | 411 | WP_047350881.1 | TIGR03750 family conjugal transfer protein | - |
| HF896_RS20340 () | 4232329..4233021 | + | 693 | WP_047350882.1 | TIGR03746 family integrating conjugative element protein | - |
| HF896_RS20345 () | 4233018..4233935 | + | 918 | WP_047350883.1 | TIGR03749 family integrating conjugative element protein | - |
| HF896_RS20350 () | 4233925..4235343 | + | 1419 | WP_047350884.1 | TIGR03752 family integrating conjugative element protein | - |
| HF896_RS20355 () | 4235324..4235773 | + | 450 | WP_003050109.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| HF896_RS20360 () | 4235773..4238655 | + | 2883 | WP_003050106.1 | conjugative transfer ATPase | - |
| HF896_RS20365 () | 4238680..4239444 | + | 765 | WP_003050104.1 | DsbA family protein | - |
| HF896_RS20370 () | 4239621..4240115 | + | 495 | WP_003050103.1 | DNA repair protein RadC | - |
| HF896_RS20375 () | 4240279..4240725 | + | 447 | WP_087747799.1 | TIGR03757 family integrating conjugative element protein | - |
| HF896_RS20380 () | 4240722..4241669 | + | 948 | WP_003050097.1 | TIGR03756 family integrating conjugative element protein | - |
| HF896_RS20385 () | 4241680..4243074 | + | 1395 | WP_003050095.1 | integrating conjugative element protein | - |
| HF896_RS20390 () | 4243071..4243418 | + | 348 | WP_003050094.1 | hypothetical protein | - |
| HF896_RS20395 () | 4243434..4244957 | + | 1524 | WP_087747801.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| HF896_RS20400 () | 4244964..4245323 | - | 360 | WP_003050090.1 | DUF3742 family protein | - |
| HF896_RS20405 () | 4245408..4246040 | - | 633 | WP_003050087.1 | RES family NAD+ phosphorylase | - |
| HF896_RS20410 () | 4246053..4246679 | - | 627 | WP_003050085.1 | hypothetical protein | - |
| HF896_RS20415 () | 4246995..4247570 | + | 576 | Protein_3954 | TraI domain-containing protein | - |
| HF896_RS20420 () | 4247716..4249443 | + | 1728 | Protein_3955 | Tn3 family transposase TnpA_IS1071 | Transposase |
| HF896_RS20430 () | 4250870..4251184 | - | 315 | WP_168728114.1 | DUF2924 domain-containing protein | - |
| HF896_RS20435 () | 4251181..4251369 | - | 189 | WP_168728115.1 | DUF3489 domain-containing protein | - |
| HF896_RS20440 () | 4251821..4252516 | - | 696 | WP_168728116.1 | HTH-type transcriptional regulator BetI | VF |
| HF896_RS20445 () | 4252615..4253766 | - | 1152 | WP_168728117.1 | Crotonobetainyl-CoA dehydrogenase | VF |
| HF896_RS20450 () | 4253810..4254598 | - | 789 | WP_166223280.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HF896_RS20455 () | 4254658..4255905 | - | 1248 | WP_166223277.1 | ABC transporter substrate-binding protein | - |
| HF896_RS20460 () | 4255990..4257042 | - | 1053 | WP_166223274.1 | branched-chain amino acid ABC transporter permease | - |
| HF896_RS20465 () | 4257045..4257929 | - | 885 | WP_166223271.1 | branched-chain amino acid ABC transporter permease | - |
| HF896_RS20470 () | 4257926..4259887 | - | 1962 | WP_166223268.1 | AMP-binding protein | - |
| HF896_RS20475 () | 4259884..4260681 | - | 798 | WP_166223265.1 | ABC transporter ATP-binding protein | - |
| HF896_RS20480 () | 4260783..4261541 | - | 759 | WP_166223262.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| HF896_RS20485 () | 4261574..4262812 | - | 1239 | WP_166223259.1 | thiolase family protein | - |
| HF896_RS20490 () | 4262922..4264001 | - | 1080 | WP_166223256.1 | CoA transferase | - |
| HF896_RS20495 () | 4264132..4264914 | + | 783 | WP_166223253.1 | enoyl-CoA hydratase/isomerase family protein | - |
| HF896_RS20500 () | 4264930..4266162 | + | 1233 | WP_174764529.1 | phenylacetate--CoA ligase family protein | - |
| HF896_RS20505 () | 4266341..4266847 | - | 507 | WP_168728118.1 | hypothetical protein | - |
| HF896_RS20510 () | 4266985..4267907 | + | 923 | Protein_3973 | IS3 family transposase IS401 | Transposase |
| HF896_RS20515 () | 4268046..4270415 | + | 2370 | Protein_3974 | Tn3 family transposase TnpA_IS1071 | Transposase |
| HF896_RS20520 () | 4270983..4272002 | - | 1020 | WP_059401473.1 | ACR3 family arsenite efflux transporter | - |
| HF896_RS20525 () | 4272058..4272561 | - | 504 | WP_059401474.1 | arsenate reductase ArsC | - |
| HF896_RS20530 () | 4272565..4272999 | - | 435 | Protein_3977 | glyoxalase/bleomycin resistance/dioxygenase family protein | - |
| HF896_RS20535 () | 4273128..4274231 | - | 1104 | WP_059400200.1 | IS5 family transposase ISAzo41 | Transposase |
| HF896_RS20545 () | 4274400..4274723 | - | 324 | WP_059400492.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| HF896_RS20550 () | 4274810..4276816 | + | 2007 | WP_082136921.1 | arsenical pump-driving ATPase | - |
| HF896_RS20555 () | 4277187..4277357 | + | 171 | WP_168727576.1 | hypothetical protein | - |
| HF896_RS20560 () | 4277614..4278219 | + | 606 | WP_168728119.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
| HF896_RS20565 () | 4278337..4278651 | + | 315 | WP_081462206.1 | hypothetical protein | - |
| HF896_RS20570 () | 4278843..4279790 | - | 948 | WP_013520793.1 | hypothetical protein | - |
| HF896_RS20575 () | 4279778..4280326 | - | 549 | WP_059401476.1 | RES family NAD+ phosphorylase | Toxin Detail |
| HF896_RS20580 () | 4280323..4280694 | - | 372 | WP_013520795.1 | MbcA/ParS/Xre antitoxin family protein | Antitoxin Detail |
| HF896_RS20585 () | 4281009..4281338 | - | 330 | WP_013520796.1 | chorismate mutase | - |
| HF896_RS20590 () | 4281335..4282834 | - | 1500 | WP_013520797.1 | Isochorismate synthase MenF | VF |
| HF896_RS20595 () | 4283176..4284936 | + | 1761 | WP_013723155.1 | hypothetical protein | VF |
| HF896_RS20600 () | 4285099..4287864 | + | 2766 | WP_013723156.1 | hypothetical protein | VF |
| HF896_RS20605 () | 4287803..4288576 | - | 774 | WP_148262989.1 | phosphoglycolate phosphatase | - |
| HF896_RS20610 () | 4288744..4289118 | + | 375 | WP_013723158.1 | hypothetical protein | - |
| HF896_RS20615 () | 4289135..4289815 | - | 681 | WP_013520802.1 | hypothetical protein | VF |
| HF896_RS20620 () | 4289864..4290271 | + | 408 | WP_013723159.1 | Co2+/Mg2+ efflux protein ApaG | - |
| HF896_RS20625 () | 4290268..4292256 | + | 1989 | WP_013723160.1 | site-specific recombinase | - |
| HF896_RS20630 () | 4292426..4293691 | + | 1266 | WP_013723161.1 | cation:proton antiporter | - |
| HF896_RS20635 () | 4293681..4294805 | + | 1125 | WP_013723162.1 | glutamate--cysteine ligase | - |
| HF896_RS20640 () | 4294808..4295791 | + | 984 | WP_168728120.1 | thiamine-phosphate kinase | - |
| HF896_RS20645 () | 4295779..4296468 | - | 690 | WP_168728121.1 | hypothetical protein | VF |
| HF896_RS20650 () | 4296627..4298369 | + | 1743 | WP_168728122.1 | alpha/beta fold hydrolase | - |
| HF896_RS20655 () | 4298372..4299139 | + | 768 | WP_168728123.1 | enoyl-ACP reductase FabI | - |
| HF896_RS20660 () | 4299144..4300598 | + | 1455 | WP_013723174.1 | hypothetical protein | VF |
| HF896_RS20665 () | 4300595..4301665 | + | 1071 | WP_013723175.1 | Multidrug resistance protein MdtA | VF |
| HF896_RS20670 () | 4301662..4304400 | + | 2739 | WP_013723176.1 | ribosome-associated ATPase/putative transporter RbbA | - |
| HF896_RS20675 () | 4304405..4305541 | + | 1137 | WP_013723177.1 | ABC transporter permease | - |
| HF896_RS20680 () | 4305619..4307058 | + | 1440 | WP_013723178.1 | bifunctional enoyl-CoA hydratase/phosphate acetyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|