MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 59502 bp
Accession: NZ_CP051291 Location: 997615..1057116 Organism: Helicobacter pylori strain ASHA-002 Replicon: chromosome
Accession: NZ_CP051291 Location: 997615..1057116 Organism: Helicobacter pylori strain ASHA-002 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGI44_RS04755 () | 993170..993547 | - | 378 | WP_000665787.1 | RidA family protein | - |
| HGI44_RS04765 () | 993975..994274 | + | 300 | WP_014661983.1 | TRL-like family protein | - |
| HGI44_RS04785 () | 994835..996325 | + | 1491 | WP_202135297.1 | Na+/H+ antiporter NhaC family protein | - |
| HGI44_RS04790 () | 996638..997000 | + | 363 | WP_202135298.1 | hypothetical protein | - |
| HGI44_RS04795 () | 997569..998582 | - | 1014 | WP_202135299.1 | LapA family protein | - |
| HGI44_RS04800 () | 998592..999044 | - | 453 | WP_001203873.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| HGI44_RS04805 () | 999058..999927 | - | 870 | WP_000505052.1 | acetyl-CoA carboxylase, carboxyltransferase subunit beta | - |
| HGI44_RS04810 () | 1000008..1000622 | + | 615 | WP_202132558.1 | recombination protein RecO | - |
| HGI44_RS04815 () | 1000633..1001288 | + | 656 | Protein_938 | nicotinamide-nucleotide amidohydrolase family protein | - |
| HGI44_RS04820 () | 1001290..1001856 | - | 567 | WP_202136110.1 | hypothetical protein | - |
| HGI44_RS04825 () | 1001921..1002553 | - | 633 | WP_202135302.1 | NAD(P)H-dependent oxidoreductase | - |
| HGI44_RS04830 () | 1002550..1003404 | - | 855 | WP_202135303.1 | prolipoprotein diacylglyceryl transferase | - |
| HGI44_RS04835 () | 1003414..1004142 | - | 729 | WP_120934892.1 | RluA family pseudouridine synthase | - |
| HGI44_RS04840 () | 1004160..1005341 | - | 1182 | WP_202135304.1 | 3-deoxy-D-manno-octulosonic acid transferase | VF |
| HGI44_RS04845 () | 1005342..1006106 | - | 765 | WP_001091745.1 | zinc ribbon domain-containing protein | - |
| HGI44_RS04850 () | 1006116..1006847 | - | 732 | WP_202132563.1 | Nif3-like dinuclear metal center hexameric protein | - |
| HGI44_RS04855 () | 1006849..1007745 | - | 897 | WP_202136111.1 | glycine--tRNA ligase subunit alpha | - |
| HGI44_RS04860 () | 1007759..1008697 | - | 939 | WP_202136112.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| HGI44_RS04865 () | 1009017..1009277 | - | 261 | WP_202135305.1 | hypothetical protein | - |
| HGI44_RS04870 () | 1009314..1010908 | - | 1595 | Protein_949 | dynamin-like GTPase family protein | - |
| HGI44_RS04875 () | 1010964..1011728 | + | 765 | WP_202135306.1 | hypothetical protein | - |
| HGI44_RS04880 () | 1011739..1013655 | + | 1917 | WP_202135307.1 | hypothetical protein | - |
| HGI44_RS04885 () | 1013645..1013947 | + | 303 | WP_000649845.1 | TrbC/VirB2 family protein | - |
| HGI44_RS04890 () | 1013948..1014208 | + | 261 | WP_202136113.1 | virB3 type IV secretion protein | - |
| HGI44_RS04895 () | 1014221..1015006 | + | 786 | Protein_954 | VirB4 family type IV secretion system protein | - |
| HGI44_RS04900 () | 1015132..1015548 | - | 417 | WP_202135308.1 | IS200-IS605 family transposase IS606 | Transposase |
| HGI44_RS04905 () | 1015585..1016931 | + | 1347 | WP_202136114.1 | IS200-IS605 family transposase IS606 | Transposase |
| HGI44_RS04910 () | 1016985..1017380 | + | 396 | WP_202136012.1 | VirB4 family type IV secretion system protein | - |
| HGI44_RS04915 () | 1017442..1018683 | + | 1242 | WP_202136115.1 | Type IV secretion system protein PtlC | VF |
| HGI44_RS04920 () | 1018676..1020610 | + | 1935 | WP_202136116.1 | type IA DNA topoisomerase | - |
| HGI44_RS04925 () | 1020740..1021726 | + | 987 | WP_202135311.1 | hypothetical protein | VF |
| HGI44_RS04930 () | 1021726..1023267 | + | 1542 | Protein_961 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| HGI44_RS04935 () | 1023264..1024501 | + | 1238 | Protein_962 | Type IV secretion system protein virB10 | VF |
| HGI44_RS04940 () | 1024571..1024863 | + | 293 | Protein_963 | hypothetical protein | - |
| HGI44_RS04945 () | 1024856..1025139 | + | 284 | Protein_964 | hypothetical protein | - |
| HGI44_RS04950 () | 1025121..1025422 | + | 302 | Protein_965 | hypothetical protein | - |
| HGI44_RS04955 () | 1025422..1026363 | + | 942 | Protein_966 | Type IV secretion system protein PtlH | VF |
| HGI44_RS04960 () | 1026360..1026815 | + | 456 | WP_202135313.1 | mobilization protein | - |
| HGI44_RS04965 () | 1026812..1027102 | + | 291 | WP_202135314.1 | hypothetical protein | - |
| HGI44_RS04970 () | 1027103..1027660 | + | 558 | WP_202135315.1 | hypothetical protein | - |
| HGI44_RS04975 () | 1027661..1029388 | + | 1728 | WP_202136117.1 | Protein VirD4 | VF |
| HGI44_RS04980 () | 1029663..1029944 | - | 282 | WP_000921935.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| HGI44_RS04985 () | 1029937..1030251 | - | 315 | WP_000065286.1 | hypothetical protein | Antitoxin Detail |
| HGI44_RS04990 () | 1030543..1030698 | + | 156 | WP_202135317.1 | relaxase | - |
| HGI44_RS04995 () | 1030715..1031341 | + | 627 | WP_202135318.1 | hypothetical protein | - |
| HGI44_RS05000 () | 1031398..1032327 | - | 930 | WP_202135319.1 | hypothetical protein | - |
| HGI44_RS05005 () | 1032561..1033538 | + | 978 | WP_202135320.1 | HipA domain-containing protein | - |
| HGI44_RS05010 () | 1033710..1034084 | + | 375 | Protein_977 | CAAX protease | - |
| HGI44_RS05015 () | 1034106..1034393 | + | 288 | WP_202135321.1 | hypothetical protein | - |
| HGI44_RS05020 () | 1034527..1035315 | + | 789 | WP_202135322.1 | Fic family protein | - |
| HGI44_RS05025 () | 1035633..1036700 | - | 1068 | WP_202135323.1 | Tyrosine recombinase XerH ; Integrase | Integrase |
| HGI44_RS05030 () | 1037797..1039836 | - | 2040 | WP_202135324.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HGI44_RS05035 () | 1040843..1042863 | - | 2021 | Protein_982 | dynamin family protein | - |
| HGI44_RS05040 () | 1042865..1044511 | - | 1647 | Protein_983 | dynamin family protein | - |
| HGI44_RS05045 () | 1044727..1045014 | - | 288 | WP_202132566.1 | virulence factor | - |
| HGI44_RS05050 () | 1045082..1045362 | - | 281 | Protein_985 | DUF3240 family protein | - |
| HGI44_RS05055 () | 1045373..1048432 | - | 3060 | WP_202132567.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| HGI44_RS05060 () | 1048432..1049511 | - | 1080 | WP_202132568.1 | sodium:proton antiporter | - |
| HGI44_RS05065 () | 1049508..1050815 | - | 1308 | WP_202132569.1 | TolC family protein | - |
| HGI44_RS05070 () | 1050805..1052907 | - | 2103 | WP_202132570.1 | glycine--tRNA ligase subunit beta | - |
| HGI44_RS05075 () | 1053019..1054086 | + | 1068 | WP_202132571.1 | hypothetical protein | - |
| HGI44_RS05080 () | 1054099..1055574 | + | 1476 | WP_202132572.1 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | - |
| HGI44_RS05085 () | 1055589..1055870 | + | 282 | WP_202132573.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC | - |
| HGI44_RS05090 () | 1055944..1057254 | - | 1311 | WP_202135328.1 | adenosylmethionine--8-amino-7-oxononanoate transaminase | - |
| HGI44_RS05095 () | 1057384..1058847 | + | 1464 | WP_202135329.1 | peptidylprolyl isomerase | - |
| HGI44_RS05100 () | 1058847..1060346 | + | 1500 | WP_202135330.1 | cell division protein FtsA | - |
| HGI44_RS05105 () | 1060476..1061624 | + | 1149 | WP_202132577.1 | cell division protein FtsZ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|