MGE detailed information
MGE type: Prophage MGE length: 58562 bp
Accession: NZ_CP051001 Location: 3211086..3269647 Organism: Escherichia coli O157:H16 str. 98-3133 Replicon: chromosome
Accession: NZ_CP051001 Location: 3211086..3269647 Organism: Escherichia coli O157:H16 str. 98-3133 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BY40_RS15625 (3207189) | 3207189..3208175 | - | 987 | Protein_3060 | GGDEF domain-containing protein | - |
| BY40_RS15630 (3208248) | 3208248..3208607 | - | 360 | WP_001191027.1 | DUF4186 domain-containing protein | - |
| BY40_RS15635 (3208607) | 3208607..3209533 | - | 927 | WP_000257409.1 | glutaminase B | - |
| BY40_RS15640 (3209597) | 3209597..3210985 | - | 1389 | WP_000156615.1 | succinate-semialdehyde dehydrogenase | - |
| BY40_RS15645 (3211086) | 3211086..3211967 | + | 882 | WP_000366501.1 | hypothetical protein | VF |
| BY40_RS15650 (3212045) | 3212045..3213160 | + | 1116 | WP_000258586.1 | putative protein YneK | - |
| BY40_RS15655 (3213310) | 3213310..3214500 | + | 1191 | WP_000210799.1 | L-arabinose MFS transporter | - |
| BY40_RS15660 (3214525) | 3214525..3215190 | - | 666 | WP_000885033.1 | NAAT family transporter MarC | - |
| BY40_RS15665 (3215402) | 3215402..3215836 | + | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
| BY40_RS15670 (3215856) | 3215856..3216239 | + | 384 | WP_000091199.1 | hypothetical protein | VF |
| BY40_RS15675 (3216271) | 3216271..3216489 | + | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| BY40_RS15680 (3216520) | 3216520..3217419 | - | 900 | WP_000087187.1 | O-acetylserine/cysteine exporter | - |
| BY40_RS15685 (3217614) | 3217614..3218801 | + | 1188 | WP_001054183.1 | efflux MFS transporter YdeE | - |
| BY40_RS15690 (3218928) | 3218928..3219023 | + | 96 | WP_000901367.1 | protein MgtS | - |
| BY40_RS15695 (3219023) | 3219023..3219127 | + | 105 | WP_211180496.1 | protein MgtT | - |
| BY40_RS15700 (3219242) | 3219242..3220132 | - | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| BY40_RS15705 (3220387) | 3220387..3220779 | - | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| BY40_RS15710 (3221055) | 3221055..3221573 | + | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| BY40_RS15715 (3221617) | 3221617..3223662 | - | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| BY40_RS15720 (3223799) | 3223799..3224545 | + | 747 | WP_000636571.1 | hypothetical protein | VF |
| BY40_RS15725 (3224634) | 3224634..3225320 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| BY40_RS15730 (3225497) | 3225497..3225700 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| BY40_RS15735 (3225735) | 3225735..3227195 | - | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| BY40_RS15740 (3227284) | 3227284..3228567 | - | 1284 | Protein_3083 | MHS family MFS transporter YdfJ | - |
| BY40_RS15745 (3229171) | 3229171..3229284 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| BY40_RS15750 (3229353) | 3229353..3229586 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| BY40_RS15755 (3229903) | 3229903..3230493 | + | 591 | WP_000086522.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| BY40_RS15760 (3230591) | 3230591..3231166 | - | 576 | WP_000885600.1 | tail fiber assembly protein | - |
| BY40_RS15765 (3231166) | 3231166..3231378 | - | 213 | Protein_3088 | hypothetical protein | - |
| BY40_RS15770 (3231465) | 3231465..3231767 | - | 303 | Protein_3089 | hypothetical protein | - |
| BY40_RS15775 (3231725) | 3231725..3232270 | - | 546 | WP_000453589.1 | DNA-packaging protein | - |
| BY40_RS15780 (3232659) | 3232659..3232892 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| BY40_RS15785 (3232950) | 3232950..3233360 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| BY40_RS15790 (3233512) | 3233512..3233685 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| BY40_RS15795 (3233857) | 3233857..3234012 | - | 156 | WP_001309517.1 | protein YnfN | - |
| BY40_RS15800 (3234092) | 3234092..3234157 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| BY40_RS15805 (3234160) | 3234160..3234348 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| BY40_RS15810 (3234359) | 3234359..3234571 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| BY40_RS15815 (3234934) | 3234934..3235431 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| BY40_RS15820 (3235428) | 3235428..3235961 | - | 534 | WP_001092971.1 | lysozyme | - |
| BY40_RS15825 (3235958) | 3235958..3236269 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| BY40_RS15830 (3236274) | 3236274..3236489 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| BY40_RS15835 (3236709) | 3236709..3236879 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| BY40_RS15840 (3237243) | 3237243..3237458 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| BY40_RS15845 (3237759) | 3237759..3237971 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| BY40_RS15850 (3238026) | 3238026..3238115 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| BY40_RS15855 (3238393) | 3238393..3239145 | - | 753 | WP_001047135.1 | antitermination protein | - |
| BY40_RS15860 (3239159) | 3239159..3240208 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| BY40_RS15865 (3240210) | 3240210..3240488 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| BY40_RS15870 (3240555) | 3240555..3240806 | - | 252 | WP_000980994.1 | protein Rem | - |
| BY40_RS15875 (3241023) | 3241023..3241178 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| BY40_RS15880 (3241250) | 3241250..3241537 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| BY40_RS15885 (3241537) | 3241537..3241776 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| BY40_RS15890 (3241801) | 3241801..3242106 | + | 306 | WP_001326990.1 | protein YdfV | - |
| BY40_RS15895 (3242309) | 3242309..3242641 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| BY40_RS24230 (3243078) | 3243078..3243227 | - | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| BY40_RS15900 (3243348) | 3243348..3244370 | - | 1023 | Protein_3116 | ISNCY family transposase ISCARN112 | Transposase |
| BY40_RS15905 (3245160) | 3245160..3245447 | - | 288 | Protein_3117 | hypothetical protein | - |
| BY40_RS15910 (3245925) | 3245925..3246414 | - | 490 | Protein_3118 | class I SAM-dependent methyltransferase | - |
| BY40_RS15915 (3246411) | 3246411..3246662 | - | 252 | Protein_3119 | DUF977 family protein | - |
| BY40_RS15920 (3246652) | 3246652..3247032 | + | 381 | Protein_3120 | hypothetical protein | - |
| BY40_RS15925 (3247075) | 3247075..3247971 | - | 897 | Protein_3121 | IS3 family transposase ISSd1 | Transposase |
| BY40_RS15930 (3247978) | 3247978..3249129 | - | 1152 | WP_001254876.1 | IS30 family transposase IS30D | Transposase |
| BY40_RS24235 (3249126) | 3249126..3249212 | - | 87 | Protein_3123 | IS3 family transposase ISSfl10 | Transposase |
| BY40_RS15935 (3249194) | 3249194..3249454 | - | 261 | Protein_3124 | IS3 family transposase ISSfl10 | Transposase |
| BY40_RS15940 (3249517) | 3249517..3251124 | + | 1608 | Protein_3125 | 3'-5' exoribonuclease | - |
| BY40_RS15945 (3251197) | 3251197..3251448 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| BY40_RS15950 (3251483) | 3251483..3252763 | + | 1281 | WP_000876958.1 | hypothetical protein ; Integrase | Integrase |
| BY40_RS15955 (3252951) | 3252951..3253970 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| BY40_RS15960 (3253982) | 3253982..3255196 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| BY40_RS15965 (3255402) | 3255402..3255728 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| BY40_RS15970 (3255863) | 3255863..3256204 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| BY40_RS15975 (3256239) | 3256239..3256799 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| BY40_RS15980 (3256802) | 3256802..3257512 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| BY40_RS15985 (3257620) | 3257620..3257925 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| BY40_RS15990 (3258124) | 3258124..3260550 | + | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| BY40_RS15995 (3260611) | 3260611..3263034 | + | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| BY40_RS16000 (3263045) | 3263045..3263662 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| BY40_RS16005 (3263664) | 3263664..3264518 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| BY40_RS16010 (3264561) | 3264561..3265175 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| BY40_RS16015 (3265334) | 3265334..3266626 | + | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| BY40_RS16020 (3266579) | 3266579..3267274 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| BY40_RS16025 (3267399) | 3267399..3268619 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| BY40_RS16030 (3268754) | 3268754..3269647 | - | 894 | WP_001019525.1 | hypothetical protein | VF |
| BY40_RS16035 (3269754) | 3269754..3271007 | + | 1254 | WP_000091840.1 | MFS transporter | - |
| BY40_RS16045 (3271235) | 3271235..3271912 | + | 678 | WP_001373818.1 | IS66-like element accessory protein TnpA | - |
| BY40_RS16050 (3271912) | 3271912..3272259 | + | 348 | WP_000624622.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| BY40_RS16055 (3272279) | 3272279..3273850 | + | 1572 | WP_000381359.1 | IS66-like element ISCro1 family transposase | - |
| BY40_RS16060 (3274138) | 3274138..3274446 | + | 309 | WP_001340364.1 | acid resistance repetitive basic protein Asr | - |
| BY40_RS16065 (3274539) | 3274539..3274622 | + | 84 | WP_000233090.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|