MGE detailed information
MGE type: Prophage MGE length: 95652 bp
Accession: NZ_CP050998 Location: 5135116..5230767 Organism: Escherichia coli O39:NM str. F8704-2 Replicon: chromosome
Accession: NZ_CP050998 Location: 5135116..5230767 Organism: Escherichia coli O39:NM str. F8704-2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P411_RS25775 () | 5132164..5133135 | - | 972 | WP_000564745.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| P411_RS25780 () | 5133132..5133875 | - | 744 | WP_000019588.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| P411_RS25785 () | 5133916..5134311 | - | 396 | WP_000252980.1 | MAPEG family protein | - |
| P411_RS25790 () | 5134364..5135134 | - | 771 | WP_044713004.1 | DUF72 domain-containing protein | - |
| P411_RS25795 () | 5135116..5136429 | - | 1314 | WP_024239124.1 | hypothetical protein ; Integrase | Integrase |
| P411_RS25800 () | 5136485..5136721 | - | 237 | WP_032321345.1 | excisionase family protein | - |
| P411_RS25805 () | 5136730..5136876 | - | 147 | WP_032361717.1 | hypothetical protein | - |
| P411_RS25810 () | 5136880..5137122 | - | 243 | WP_000457703.1 | DUF4222 domain-containing protein | - |
| P411_RS25815 () | 5137154..5137525 | - | 372 | WP_024239125.1 | DUF5406 family protein | - |
| P411_RS25820 () | 5137567..5138394 | - | 828 | WP_001538856.1 | SPFH domain-containing protein | - |
| P411_RS25825 () | 5138640..5139032 | - | 393 | WP_000566773.1 | hypothetical protein | - |
| P411_RS25830 () | 5139219..5139434 | - | 216 | WP_000002321.1 | hypothetical protein | - |
| P411_RS25835 () | 5139434..5139793 | - | 360 | WP_032361716.1 | hypothetical protein | - |
| P411_RS25840 () | 5139989..5140195 | - | 207 | WP_024239127.1 | hypothetical protein | - |
| P411_RS25845 () | 5140534..5140761 | + | 228 | WP_000606214.1 | hypothetical protein | - |
| P411_RS25850 () | 5140930..5141391 | - | 462 | WP_032361715.1 | helix-turn-helix transcriptional regulator | - |
| P411_RS25855 () | 5141538..5142227 | - | 690 | WP_000800136.1 | LexA family transcriptional regulator | - |
| P411_RS25860 () | 5142361..5142651 | + | 291 | WP_000398850.1 | YdaS family helix-turn-helix protein | - |
| P411_RS25865 () | 5142648..5143355 | + | 708 | WP_001090259.1 | Rha family transcriptional regulator | - |
| P411_RS25870 () | 5143464..5144126 | + | 663 | WP_024239129.1 | ash family protein | - |
| P411_RS25875 () | 5144123..5144782 | + | 660 | WP_024239130.1 | ash family protein | - |
| P411_RS25880 () | 5144779..5145012 | + | 234 | WP_024239131.1 | hypothetical protein | - |
| P411_RS25885 () | 5144999..5145892 | + | 894 | WP_032361752.1 | hypothetical protein | - |
| P411_RS25890 () | 5145912..5146802 | + | 891 | WP_032361753.1 | ATP-binding protein | - |
| P411_RS25895 () | 5146799..5148199 | + | 1401 | WP_000184325.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| P411_RS25900 () | 5148196..5148453 | + | 258 | WP_001065354.1 | hypothetical protein | - |
| P411_RS25905 () | 5148505..5149494 | + | 990 | WP_024173991.1 | DUF968 domain-containing protein | - |
| P411_RS25910 () | 5149512..5149891 | + | 380 | Protein_4995 | antiterminator Q family protein | - |
| P411_RS25915 () | 5150028..5151236 | + | 1209 | WP_001352368.1 | IS4 family transposase IS10R | Transposase |
| P411_RS25920 () | 5151445..5151642 | + | 198 | WP_000917767.1 | hypothetical protein | - |
| P411_RS25925 () | 5151794..5152858 | + | 1065 | WP_220541661.1 | site-specific DNA-methyltransferase | - |
| P411_RS25930 () | 5152965..5153225 | + | 261 | WP_000573777.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| P411_RS25935 () | 5153286..5153660 | + | 375 | WP_032258101.1 | helix-turn-helix transcriptional regulator | - |
| P411_RS25940 () | 5153968..5154399 | + | 432 | WP_001299895.1 | tellurite resistance protein | - |
| P411_RS25945 () | 5154396..5154563 | + | 168 | WP_000216623.1 | DUF3927 family protein | - |
| P411_RS25950 () | 5154971..5156824 | + | 1854 | WP_220541662.1 | SASA family carbohydrate esterase | - |
| P411_RS25955 () | 5156974..5157189 | + | 216 | WP_000284518.1 | class II holin family protein | - |
| P411_RS25960 () | 5157194..5157538 | + | 345 | WP_021569237.1 | YdfR family protein | - |
| P411_RS25965 () | 5157589..5158122 | + | 534 | WP_220541663.1 | lysozyme | - |
| P411_RS25970 () | 5158421..5158915 | + | 495 | WP_001082547.1 | lysis protein | - |
| P411_RS25975 () | 5158912..5159136 | + | 225 | WP_000736096.1 | hypothetical protein | - |
| P411_RS25980 () | 5159506..5159733 | - | 228 | WP_024239164.1 | YlcI/YnfO family protein | - |
| P411_RS25985 () | 5159775..5160140 | + | 366 | WP_001303046.1 | HNH endonuclease | - |
| P411_RS25990 () | 5160429..5160992 | + | 564 | WP_024239162.1 | terminase small subunit | - |
| P411_RS25995 () | 5160989..5162650 | + | 1662 | WP_053882732.1 | terminase large subunit | - |
| P411_RS26000 () | 5162714..5164651 | + | 1938 | WP_220541664.1 | phage major capsid protein | - |
| P411_RS26005 () | 5164696..5164917 | + | 222 | WP_001063096.1 | hypothetical protein | - |
| P411_RS26010 () | 5164863..5167447 | + | 2585 | Protein_5015 | phage portal protein | - |
| P411_RS26015 () | 5167444..5167770 | + | 327 | WP_000125988.1 | head-tail connector protein | - |
| P411_RS26020 () | 5167780..5168130 | + | 351 | WP_001007905.1 | phage head closure protein | - |
| P411_RS26025 () | 5168127..5168573 | + | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| P411_RS26030 () | 5168570..5168914 | + | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| P411_RS26035 () | 5168981..5169697 | + | 717 | WP_001275461.1 | major tail subunit | - |
| P411_RS26040 () | 5169703..5170077 | + | 375 | WP_001030043.1 | phage tail assembly chaperone | - |
| P411_RS26045 () | 5170173..5170382 | + | 210 | WP_122998563.1 | DUF4035 domain-containing protein | - |
| P411_RS26050 () | 5170434..5173160 | + | 2727 | Protein_5023 | phage tail tape measure protein | - |
| P411_RS26055 () | 5173156..5173314 | + | 159 | Protein_5024 | phage minor tail protein L | - |
| P411_RS26060 () | 5173320..5174062 | + | 743 | Protein_5025 | C40 family peptidase | - |
| P411_RS26065 () | 5174059..5174640 | + | 582 | WP_001090062.1 | tail assembly protein | - |
| P411_RS26070 () | 5174881..5178357 | + | 3477 | WP_220541666.1 | host specificity protein J | - |
| P411_RS26075 () | 5178424..5179023 | + | 600 | WP_001230309.1 | hypothetical protein | VF |
| P411_RS26080 () | 5179088..5180401 | + | 1314 | WP_220541667.1 | ISNCY family transposase KIS | Transposase |
| P411_RS26085 () | 5180403..5180672 | + | 270 | WP_024239032.1 | phage tail fiber C-terminal domain-containing protein | - |
| P411_RS26090 () | 5180674..5180765 | + | 92 | Protein_5031 | tail assembly protein | - |
| P411_RS26095 () | 5180781..5181416 | + | 636 | WP_024239033.1 | hypothetical protein | VF |
| P411_RS26100 () | 5181651..5181780 | - | 130 | Protein_5033 | T3SS effector NleG family protein | - |
| P411_RS26105 () | 5181830..5183037 | - | 1208 | Protein_5034 | IS256 family transposase IS1414 | Transposase |
| P411_RS26110 () | 5183113..5184003 | - | 891 | WP_024239034.1 | manganese catalase family protein | - |
| P411_RS26115 () | 5184022..5184528 | - | 507 | WP_024239035.1 | ferritin-like domain-containing protein | - |
| P411_RS26120 () | 5184565..5185065 | - | 501 | WP_001166090.1 | ferritin-like domain-containing protein | - |
| P411_RS26125 () | 5185144..5185326 | - | 183 | WP_000134810.1 | general stress protein | - |
| P411_RS26130 () | 5185895..5186143 | - | 249 | WP_032361272.1 | DinI-like family protein | - |
| P411_RS28500 () | 5186405..5186500 | - | 96 | Protein_5040 | hypothetical protein | - |
| P411_RS26135 () | 5186497..5187063 | - | 567 | Protein_5041 | hydrolase | - |
| P411_RS26140 () | 5187373..5189145 | + | 1773 | WP_001258662.1 | aspartate--tRNA ligase | - |
| P411_RS26145 () | 5189263..5189715 | + | 453 | WP_001300367.1 | dihydroneopterin triphosphate diphosphatase | - |
| P411_RS26150 () | 5189744..5190484 | + | 741 | WP_000907248.1 | hypothetical protein | VF |
| P411_RS26155 () | 5190519..5191040 | + | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| P411_RS26160 () | 5191042..5191644 | - | 603 | WP_001024929.1 | YebB family permuted papain-like enzyme | - |
| P411_RS26165 () | 5191717..5191782 | + | 66 | WP_072094247.1 | stress response small protein YobI | - |
| P411_RS26170 () | 5191921..5192532 | + | 612 | WP_000580327.1 | Holliday junction branch migration protein RuvA | - |
| P411_RS26175 () | 5192541..5193551 | + | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | - |
| P411_RS26180 () | 5193795..5194580 | - | 786 | WP_000571464.1 | hypothetical protein | VF |
| P411_RS26185 () | 5194577..5195332 | - | 756 | WP_000202980.1 | hypothetical protein | VF |
| P411_RS26190 () | 5195411..5196343 | + | 933 | WP_001342995.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| P411_RS26195 () | 5196359..5197681 | + | 1323 | WP_032361273.1 | murein DD-endopeptidase MepM | - |
| P411_RS26200 () | 5197801..5198772 | + | 972 | WP_000448381.1 | hypothetical protein | VF |
| P411_RS26205 () | 5198903..5200345 | - | 1443 | WP_000091176.1 | pyruvate kinase | - |
| P411_RS26210 () | 5200473..5201342 | - | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| P411_RS26215 () | 5201680..5203155 | + | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| P411_RS26220 () | 5203390..5205201 | + | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| P411_RS26225 () | 5205238..5205879 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| P411_RS26230 () | 5205935..5207113 | - | 1179 | WP_000173474.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| P411_RS26235 () | 5207247..5207537 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| P411_RS26240 () | 5207604..5207960 | + | 357 | WP_001295500.1 | protein YebF | - |
| P411_RS26245 () | 5208287..5208946 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| P411_RS26250 () | 5209155..5211215 | + | 2061 | WP_000936927.1 | oligopeptidase B | - |
| P411_RS26255 () | 5211212..5211841 | - | 630 | WP_001569951.1 | exodeoxyribonuclease X | - |
| P411_RS26260 () | 5211898..5212554 | - | 657 | WP_000011668.1 | carbon-nitrogen hydrolase family protein YobB | - |
| P411_RS26265 () | 5212656..5212886 | - | 231 | WP_032237414.1 | DNA polymerase III subunit theta | - |
| P411_RS26270 () | 5213025..5213399 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| P411_RS26275 () | 5213403..5214275 | + | 873 | WP_001569950.1 | copper homeostasis membrane protein CopD | - |
| P411_RS26280 () | 5214288..5214629 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 5214657..5214928 | - | 272 | - | - | Antitoxin Detail |
| - | 5214787..5214890 | + | 104 | - | - | Toxin Detail |
| P411_RS26285 () | 5215025..5215681 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| P411_RS26290 () | 5215682..5215873 | - | 192 | WP_001296140.1 | YebW family protein | - |
| P411_RS26295 () | 5215978..5216214 | - | 237 | WP_001295499.1 | YebV family protein | - |
| P411_RS26300 () | 5216332..5217771 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| P411_RS26305 () | 5217851..5220484 | - | 2634 | WP_001299674.1 | hypothetical protein | VF |
| P411_RS26310 () | 5220453..5221736 | - | 1284 | WP_001207283.1 | membrane integrity lipid transport subunit YebS | - |
| P411_RS26315 () | 5221866..5222363 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| P411_RS26320 () | 5222460..5223158 | + | 699 | WP_000431368.1 | RNA chaperone ProQ | - |
| P411_RS26325 () | 5223178..5225226 | + | 2049 | WP_001315679.1 | carboxy terminal-processing peptidase | - |
| P411_RS26330 () | 5225418..5226299 | + | 882 | WP_000984517.1 | protease HtpX | - |
| P411_RS26335 () | 5226345..5227718 | - | 1374 | WP_032361274.1 | MFS transporter | - |
| P411_RS26340 () | 5227895..5228686 | + | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| P411_RS26345 () | 5228829..5229068 | - | 240 | WP_001211011.1 | YobH family protein | - |
| P411_RS26350 () | 5229227..5229370 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| P411_RS26355 () | 5229445..5229732 | + | 288 | WP_001006860.1 | YebO family protein | - |
| P411_RS26360 () | 5230402..5230545 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| P411_RS26365 () | 5230558..5230767 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| P411_RS26370 () | 5230933..5231742 | + | 810 | WP_000010107.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| P411_RS26375 () | 5231739..5232305 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| P411_RS28505 () | 5232302..5232424 | - | 123 | WP_000547919.1 | hypothetical protein | - |
| P411_RS26380 () | 5232735..5233193 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| P411_RS26385 () | 5233248..5234099 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| P411_RS26390 () | 5234112..5234912 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|