Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5214657..5214928 | Replicon | chromosome |
| Accession | NZ_CP050998 | ||
| Organism | Escherichia coli O39:NM str. F8704-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5214787..5214890 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5214657..5214928 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P411_RS26255 | 5211212..5211841 | - | 630 | WP_001569951.1 | exodeoxyribonuclease X | - |
| P411_RS26260 | 5211898..5212554 | - | 657 | WP_000011668.1 | carbon-nitrogen hydrolase family protein YobB | - |
| P411_RS26265 | 5212656..5212886 | - | 231 | WP_032237414.1 | DNA polymerase III subunit theta | - |
| P411_RS26270 | 5213025..5213399 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| P411_RS26275 | 5213403..5214275 | + | 873 | WP_001569950.1 | copper homeostasis membrane protein CopD | - |
| P411_RS26280 | 5214288..5214629 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 5214657..5214928 | - | 272 | - | - | Antitoxin |
| - | 5214787..5214890 | + | 104 | - | - | Toxin |
| P411_RS26285 | 5215025..5215681 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| P411_RS26290 | 5215682..5215873 | - | 192 | WP_001296140.1 | YebW family protein | - |
| P411_RS26295 | 5215978..5216214 | - | 237 | WP_001295499.1 | YebV family protein | - |
| P411_RS26300 | 5216332..5217771 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 5135116..5230767 | 95651 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T153491 NZ_CP050998:5214787-5214890 [Escherichia coli O39:NM str. F8704-2]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT153491 NZ_CP050998:c5214928-5214657 [Escherichia coli O39:NM str. F8704-2]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
