MGE detailed information
MGE type: Prophage MGE length: 80262 bp
Accession: NZ_CP050998 Location: 2203651..2283912 Organism: Escherichia coli O39:NM str. F8704-2 Replicon: chromosome
Accession: NZ_CP050998 Location: 2203651..2283912 Organism: Escherichia coli O39:NM str. F8704-2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P411_RS11415 (2199512) | 2199512..2199760 | + | 249 | WP_001217539.1 | DinI-like family protein | - |
| P411_RS11420 (2199957) | 2199957..2201510 | - | 1554 | WP_032361615.1 | hypothetical protein | - |
| P411_RS11425 (2202320) | 2202320..2202745 | - | 426 | WP_032361616.1 | MaoC family dehydratase | - |
| P411_RS11430 (2202747) | 2202747..2203415 | - | 669 | WP_032361631.1 | NeuD/PglB/VioB family sugar acetyltransferase | - |
| P411_RS11435 (2203651) | 2203651..2204238 | - | 588 | WP_032361617.1 | tail fiber assembly protein | - |
| P411_RS11440 (2204238) | 2204238..2204996 | - | 759 | WP_032361618.1 | hypothetical protein | - |
| P411_RS11445 (2205000) | 2205000..2205584 | - | 585 | WP_032361619.1 | YmfQ family protein | - |
| P411_RS11450 (2205575) | 2205575..2206633 | - | 1059 | WP_032361620.1 | baseplate J/gp47 family protein | - |
| P411_RS11455 (2206620) | 2206620..2207045 | - | 426 | WP_000424728.1 | phage GP46 family protein | - |
| P411_RS11460 (2207045) | 2207045..2207593 | - | 549 | WP_000643722.1 | phage baseplate assembly protein V | - |
| P411_RS11465 (2207593) | 2207593..2208672 | - | 1080 | WP_032361621.1 | baseplate protein | - |
| P411_RS11470 (2208669) | 2208669..2209997 | - | 1329 | WP_032361622.1 | DNA circularization N-terminal domain-containing protein | - |
| P411_RS11475 (2210058) | 2210058..2211893 | - | 1836 | WP_032361623.1 | phage tail tape measure protein | - |
| P411_RS11480 (2212035) | 2212035..2212304 | - | 270 | WP_000661047.1 | phage tail assembly protein | - |
| P411_RS11485 (2212304) | 2212304..2212660 | - | 357 | WP_000090998.1 | phage tail tube protein | - |
| P411_RS11490 (2212660) | 2212660..2214156 | - | 1497 | WP_032361624.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| P411_RS11495 (2214140) | 2214140..2214310 | - | 171 | WP_032361625.1 | DUF2635 domain-containing protein | - |
| P411_RS11500 (2214319) | 2214319..2214879 | - | 561 | WP_000779279.1 | hypothetical protein | - |
| P411_RS11505 (2214876) | 2214876..2215382 | - | 507 | WP_000213502.1 | hypothetical protein | - |
| P411_RS11510 (2215357) | 2215357..2215767 | - | 411 | WP_032361626.1 | phage head closure protein | - |
| P411_RS11515 (2215764) | 2215764..2216087 | - | 324 | WP_000927711.1 | head-tail connector protein | - |
| P411_RS11520 (2216090) | 2216090..2216290 | - | 201 | WP_000601360.1 | hypothetical protein | - |
| P411_RS11525 (2216340) | 2216340..2217545 | - | 1206 | WP_032361627.1 | phage major capsid protein | - |
| P411_RS11530 (2217560) | 2217560..2218210 | - | 651 | WP_001193633.1 | HK97 family phage prohead protease | - |
| P411_RS11535 (2218188) | 2218188..2219429 | - | 1242 | WP_000466255.1 | phage portal protein | - |
| P411_RS11540 (2219429) | 2219429..2219611 | - | 183 | WP_000605605.1 | protein YmfR | - |
| P411_RS11545 (2219623) | 2219623..2221356 | - | 1734 | WP_032361629.1 | terminase large subunit | - |
| P411_RS11550 (2221353) | 2221353..2221847 | - | 495 | WP_000929173.1 | phage terminase small subunit P27 family | - |
| P411_RS11555 (2221972) | 2221972..2222322 | - | 351 | WP_032361632.1 | HNH endonuclease | - |
| P411_RS11560 (2222450) | 2222450..2223663 | + | 1214 | WP_136952279.1 | IS3 family transposase IS629 | Transposase |
| P411_RS11565 (2224022) | 2224022..2224396 | - | 375 | WP_021543580.1 | hypothetical protein | - |
| P411_RS11570 (2224435) | 2224435..2224878 | - | 444 | WP_010354678.1 | lysis protein | - |
| P411_RS11575 (2224875) | 2224875..2225351 | - | 477 | WP_021543581.1 | glycoside hydrolase family protein | - |
| P411_RS11580 (2225355) | 2225355..2225690 | - | 336 | WP_001120502.1 | phage holin, lambda family | - |
| P411_RS11585 (2225957) | 2225957..2226703 | + | 747 | WP_001406331.1 | hypothetical protein | - |
| P411_RS11590 (2226754) | 2226754..2227119 | - | 366 | WP_195222883.1 | antiterminator Q family protein | - |
| P411_RS11595 (2227134) | 2227134..2228123 | - | 990 | WP_032361248.1 | DUF968 domain-containing protein | - |
| P411_RS11600 (2228131) | 2228131..2228928 | - | 798 | WP_032361249.1 | KilA-N domain-containing protein | - |
| P411_RS11605 (2228948) | 2228948..2229337 | - | 390 | WP_032361250.1 | RusA family crossover junction endodeoxyribonuclease | - |
| P411_RS11610 (2229334) | 2229334..2229660 | - | 327 | WP_000210159.1 | LexA family transcriptional regulator | - |
| P411_RS11615 (2229657) | 2229657..2230310 | - | 654 | WP_032361251.1 | phage N-6-adenine-methyltransferase | - |
| P411_RS11620 (2230310) | 2230310..2230804 | - | 495 | WP_072149182.1 | PerC family transcriptional regulator | - |
| P411_RS11625 (2230801) | 2230801..2231742 | - | 942 | WP_032361253.1 | helix-turn-helix domain-containing protein | - |
| P411_RS11630 (2231732) | 2231732..2231911 | - | 180 | WP_001188051.1 | DUF4222 domain-containing protein | - |
| P411_RS11635 (2232087) | 2232087..2232671 | - | 585 | WP_000514170.1 | YmfL family putative regulatory protein | - |
| P411_RS11640 (2232700) | 2232700..2232963 | - | 264 | WP_000098316.1 | YdaS family helix-turn-helix protein | - |
| P411_RS11645 (2233070) | 2233070..2233774 | + | 705 | WP_001410974.1 | S24 family peptidase | - |
| P411_RS11650 (2234009) | 2234009..2235094 | + | 1086 | WP_000606712.1 | ParA family protein | - |
| P411_RS11655 (2236029) | 2236029..2236391 | + | 363 | WP_000135680.1 | protein YfdP | - |
| P411_RS11660 (2236457) | 2236457..2237281 | + | 825 | WP_000081278.1 | YfdQ family protein | - |
| P411_RS11665 (2237409) | 2237409..2237945 | + | 537 | WP_000008165.1 | 5'-deoxynucleotidase | - |
| P411_RS11670 (2237936) | 2237936..2238298 | + | 363 | WP_001242717.1 | phage protein | - |
| P411_RS28335 (2238838) | 2238838..2239077 | + | 240 | Protein_2222 | DUF551 domain-containing protein | - |
| P411_RS11680 (2239504) | 2239504..2241051 | + | 1548 | WP_032361255.1 | hypothetical protein | - |
| P411_RS11685 (2241223) | 2241223..2242446 | - | 1224 | WP_032361256.1 | hypothetical protein ; Integrase | Integrase |
| P411_RS11690 (2242832) | 2242832..2243509 | - | 678 | WP_000870700.1 | pyrimidine 5'-nucleotidase | - |
| P411_RS11695 (2243524) | 2243524..2243970 | - | 447 | WP_001092465.1 | hypothetical protein | VF |
| P411_RS11700 (2243939) | 2243939..2244352 | - | 414 | WP_000204018.1 | DNA polymerase III subunit psi | - |
| P411_RS11705 (2244455) | 2244455..2245486 | + | 1032 | WP_001272347.1 | 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC | - |
| P411_RS11725 (2246114) | 2246114..2246350 | - | 237 | WP_001393508.1 | DUF1435 domain-containing protein | - |
| P411_RS11730 (2246491) | 2246491..2247279 | + | 789 | WP_000331618.1 | siderophore-iron reductase FhuF | - |
| P411_RS11735 (2247317) | 2247317..2247994 | - | 678 | WP_001301727.1 | hypothetical protein | VF |
| P411_RS11740 (2247952) | 2247952..2248677 | - | 726 | WP_000936635.1 | hypothetical protein | VF |
| P411_RS11745 (2249296) | 2249296..2250066 | + | 771 | WP_001338213.1 | threonine/serine exporter ThrE family protein | - |
| P411_RS11750 (2250057) | 2250057..2250530 | + | 474 | WP_000538191.1 | threonine/serine exporter | - |
| P411_RS11755 (2250637) | 2250637..2251176 | + | 540 | WP_000098818.1 | primosomal protein DnaT | - |
| P411_RS11760 (2251179) | 2251179..2251916 | + | 738 | WP_000799911.1 | IS21 family transposase ISSme2 | Transposase |
| P411_RS11765 (2251965) | 2251965..2252459 | + | 495 | WP_001308243.1 | DUF2501 domain-containing protein YjjA | - |
| P411_RS11770 (2252713) | 2252713..2255004 | + | 2292 | WP_001292679.1 | phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase | - |
| P411_RS11775 (2255142) | 2255142..2256164 | - | 1023 | WP_000106030.1 | L-galactonate oxidoreductase | - |
| P411_RS11780 (2256303) | 2256303..2257217 | + | 915 | WP_000091570.1 | GntR family transcriptional regulator | - |
| P411_RS11785 (2257432) | 2257432..2258793 | + | 1362 | WP_000410113.1 | MFS transporter | - |
| P411_RS11790 (2258842) | 2258842..2260497 | - | 1656 | WP_032361257.1 | hypothetical protein | VF |
| P411_RS11795 (2260874) | 2260874..2263023 | + | 2150 | Protein_2243 | pyruvate/proton symporter BtsT | - |
| P411_RS11800 (2263073) | 2263073..2263276 | + | 204 | WP_000467859.1 | YbdD/YjiX family protein | - |
| P411_RS11805 (2263287) | 2263287..2264243 | + | 957 | WP_001299717.1 | GTPase | - |
| P411_RS11810 (2264284) | 2264284..2264586 | - | 303 | WP_000063159.1 | BrnA antitoxin family protein | Antitoxin Detail |
| P411_RS11815 (2264573) | 2264573..2264860 | - | 288 | WP_001299718.1 | BrnT family toxin | Toxin Detail |
| P411_RS11820 (2265057) | 2265057..2266223 | + | 1167 | Protein_2248 | restriction endonuclease | - |
| P411_RS11825 (2266287) | 2266287..2267906 | + | 1620 | WP_001029740.1 | class I SAM-dependent DNA methyltransferase | - |
| P411_RS11830 (2267896) | 2267896..2269287 | + | 1392 | WP_000535334.1 | restriction endonuclease subunit S | - |
| P411_RS11835 (2269382) | 2269382..2272645 | + | 3264 | WP_000058888.1 | HsdR family type I site-specific deoxyribonuclease | - |
| P411_RS11840 (2272860) | 2272860..2273198 | + | 339 | WP_000132639.1 | endoribonuclease SymE | - |
| P411_RS11845 (2273286) | 2273286..2273438 | - | 153 | WP_229018381.1 | cytoplasmic protein | - |
| P411_RS11850 (2273581) | 2273581..2274993 | + | 1413 | WP_000199313.1 | PLP-dependent aminotransferase family protein | - |
| P411_RS11855 (2275236) | 2275236..2276180 | - | 945 | WP_000181173.1 | hypothetical protein | VF |
| P411_RS11860 (2276647) | 2276647..2277879 | + | 1233 | WP_001137021.1 | multidrug efflux MFS transporter MdtM | - |
| P411_RS11865 (2277920) | 2277920..2279200 | + | 1281 | WP_001037372.1 | DUF445 domain-containing protein | - |
| P411_RS11870 (2279316) | 2279316..2280467 | + | 1152 | WP_001299707.1 | double-cubane-cluster-containing anaerobic reductase | - |
| P411_RS11875 (2280477) | 2280477..2281244 | + | 768 | WP_000331738.1 | putative 2-hydroxyacyl-CoA dehydratase activator YjiL | - |
| P411_RS11880 (2281241) | 2281241..2281507 | + | 267 | WP_000657678.1 | DUF3343 domain-containing protein | - |
| P411_RS11885 (2281819) | 2281819..2283912 | + | 2094 | WP_032361259.1 | hypothetical protein | VF |
| P411_RS11890 (2284169) | 2284169..2285008 | + | 840 | WP_000746214.1 | YjiK family protein | - |
| P411_RS11895 (2285079) | 2285079..2286257 | + | 1179 | WP_032361260.1 | MFS transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|