MGE detailed information
MGE type: Prophage MGE length: 118555 bp
Accession: NZ_CP050998 Location: 119263..237817 Organism: Escherichia coli O39:NM str. F8704-2 Replicon: chromosome
Accession: NZ_CP050998 Location: 119263..237817 Organism: Escherichia coli O39:NM str. F8704-2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P411_RS00975 (114791) | 114791..115684 | + | 894 | WP_001019528.1 | LysR family transcriptional regulator | - |
| P411_RS00980 (115819) | 115819..117039 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| P411_RS00985 (117164) | 117164..117859 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| P411_RS00990 (117812) | 117812..119104 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| P411_RS00995 (119263) | 119263..119877 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| P411_RS01000 (119920) | 119920..120774 | - | 855 | WP_000526492.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| P411_RS01005 (120776) | 120776..121393 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| P411_RS01010 (121404) | 121404..123827 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| P411_RS01015 (123888) | 123888..126314 | - | 2427 | WP_000041553.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| P411_RS01020 (126513) | 126513..126818 | - | 306 | WP_001299371.1 | DUF1161 domain-containing protein | - |
| P411_RS01025 (126926) | 126926..127636 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| P411_RS01030 (127639) | 127639..128199 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| P411_RS01035 (128234) | 128234..128575 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| P411_RS01040 (128710) | 128710..129036 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| P411_RS01045 (129242) | 129242..130456 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| P411_RS01050 (130468) | 130468..131487 | + | 1020 | WP_000836059.1 | Zn-dependent oxidoreductase | - |
| P411_RS01055 (131675) | 131675..132877 | - | 1203 | Protein_125 | hypothetical protein ; Integrase | Integrase |
| P411_RS01060 (132908) | 132908..134479 | - | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| P411_RS01065 (134499) | 134499..134846 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| P411_RS01070 (134846) | 134846..135523 | - | 678 | WP_001299364.1 | IS66 family transposase ISCro1 | Transposase |
| P411_RS01075 (135576) | 135576..135662 | - | 87 | Protein_129 | DUF3596 domain-containing protein | - |
| P411_RS01080 (135697) | 135697..135948 | - | 252 | WP_000005551.1 | excisionase family protein | - |
| P411_RS01085 (136021) | 136021..138492 | - | 2472 | WP_220541670.1 | exonuclease | - |
| P411_RS01090 (138586) | 138586..138777 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| P411_RS01095 (138774) | 138774..138962 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| P411_RS01100 (139530) | 139530..139748 | - | 219 | WP_001171942.1 | protein YdfC | - |
| P411_RS28185 (139778) | 139778..139906 | - | 129 | WP_000344964.1 | protein YdfB | - |
| P411_RS01105 (139908) | 139908..140063 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| P411_RS01110 (140329) | 140329..140748 | - | 420 | WP_000362155.1 | hypothetical protein | - |
| P411_RS01115 (140849) | 140849..141130 | + | 282 | WP_000391950.1 | YdaS family helix-turn-helix protein | - |
| P411_RS01120 (141114) | 141114..141539 | + | 426 | WP_000693834.1 | toxin YdaT family protein | - |
| P411_RS01125 (141611) | 141611..142657 | + | 1047 | WP_220541671.1 | phage replisome organizer | - |
| P411_RS01130 (142664) | 142664..143410 | + | 747 | WP_000788943.1 | ATP-binding protein | - |
| P411_RS01135 (143432) | 143432..144181 | + | 750 | WP_220541672.1 | DUF1627 domain-containing protein | - |
| P411_RS01140 (144197) | 144197..144622 | + | 426 | WP_032361691.1 | DUF977 family protein | - |
| P411_RS01145 (144797) | 144797..145462 | + | 666 | WP_000150294.1 | epoxyqueuosine reductase QueH | - |
| P411_RS01150 (145647) | 145647..146765 | + | 1119 | WP_001427299.1 | DNA cytosine methyltransferase | - |
| P411_RS01155 (146779) | 146779..147657 | + | 879 | WP_001012717.1 | NgoMIV family type II restriction endonuclease | - |
| P411_RS01160 (147828) | 147828..148100 | + | 273 | WP_001447823.1 | hypothetical protein | - |
| P411_RS01165 (148102) | 148102..149151 | + | 1050 | WP_220541673.1 | DUF968 domain-containing protein | - |
| P411_RS01170 (149164) | 149164..149523 | + | 360 | WP_000904364.1 | RusA family crossover junction endodeoxyribonuclease | - |
| P411_RS01175 (149532) | 149532..150083 | + | 552 | WP_000640045.1 | DUF1133 family protein | - |
| P411_RS01180 (150308) | 150308..150505 | + | 198 | WP_000917767.1 | hypothetical protein | - |
| P411_RS01185 (150656) | 150656..151714 | + | 1059 | WP_024215834.1 | site-specific DNA-methyltransferase | - |
| P411_RS28190 (152109) | 152109..152225 | - | 117 | Protein_153 | hypothetical protein | - |
| P411_RS28195 (152271) | 152271..152414 | - | 144 | Protein_154 | hypothetical protein | - |
| P411_RS01205 (152391) | 152391..154241 | + | 1851 | WP_220541674.1 | SASA family carbohydrate esterase | - |
| P411_RS01210 (154532) | 154532..154747 | + | 216 | WP_024165672.1 | class II holin family protein | - |
| P411_RS01215 (154816) | 154816..156429 | - | 1614 | WP_016236744.1 | IS66 family transposase ISEc23 | Transposase |
| P411_RS01220 (156460) | 156460..156810 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| P411_RS01225 (156807) | 156807..157232 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| P411_RS01230 (157286) | 157286..157624 | + | 339 | WP_220541675.1 | YdfR family protein | - |
| P411_RS01235 (157667) | 157667..158200 | + | 534 | WP_220541676.1 | lysozyme | - |
| P411_RS01240 (158499) | 158499..158993 | + | 495 | WP_001082547.1 | lysis protein | - |
| P411_RS01245 (158990) | 158990..159214 | + | 225 | WP_000736096.1 | hypothetical protein | - |
| P411_RS01250 (159583) | 159583..159810 | - | 228 | WP_024239164.1 | YlcI/YnfO family protein | - |
| P411_RS01255 (159852) | 159852..160217 | + | 366 | WP_015994246.1 | HNH endonuclease | - |
| P411_RS01260 (160507) | 160507..161070 | + | 564 | WP_032240614.1 | terminase small subunit | - |
| P411_RS01265 (161067) | 161067..162728 | + | 1662 | WP_220541651.1 | terminase large subunit | - |
| P411_RS01270 (162792) | 162792..164729 | + | 1938 | WP_032284581.1 | phage major capsid protein | - |
| P411_RS01275 (164774) | 164774..164995 | + | 222 | WP_001063108.1 | hypothetical protein | - |
| P411_RS01280 (164941) | 164941..167525 | + | 2585 | Protein_170 | phage portal protein | - |
| P411_RS01285 (167522) | 167522..167848 | + | 327 | WP_000125988.1 | head-tail connector protein | - |
| P411_RS01290 (167858) | 167858..168208 | + | 351 | WP_001007905.1 | phage head closure protein | - |
| P411_RS01295 (168205) | 168205..168651 | + | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| P411_RS01300 (168648) | 168648..168992 | + | 345 | WP_000133391.1 | DUF3168 domain-containing protein | - |
| P411_RS01305 (169051) | 169051..169767 | + | 717 | WP_001275510.1 | major tail subunit | - |
| P411_RS01310 (169773) | 169773..170147 | + | 375 | WP_001030063.1 | phage tail assembly chaperone | - |
| P411_RS01315 (170243) | 170243..170452 | + | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| P411_RS01320 (170504) | 170504..173746 | + | 3243 | WP_220541652.1 | phage tail tape measure protein | - |
| P411_RS01325 (173739) | 173739..174080 | + | 342 | WP_000807964.1 | phage tail protein | - |
| P411_RS01330 (174080) | 174080..174778 | + | 699 | WP_001426561.1 | phage minor tail protein L | - |
| P411_RS01335 (174789) | 174789..175532 | + | 744 | WP_220541643.1 | C40 family peptidase | - |
| P411_RS01340 (175529) | 175529..176110 | + | 582 | WP_259407092.1 | tail assembly protein | - |
| P411_RS01345 (176301) | 176301..176828 | - | 528 | WP_000649830.1 | hypothetical protein | VF |
| P411_RS01350 (176962) | 176962..180435 | + | 3474 | WP_220541677.1 | host specificity protein J | - |
| P411_RS01355 (180503) | 180503..181102 | + | 600 | WP_032240504.1 | hypothetical protein | VF |
| P411_RS01360 (181167) | 181167..182471 | + | 1305 | WP_220541678.1 | ISNCY family transposase KIS | Transposase |
| P411_RS01365 (182473) | 182473..182742 | + | 270 | WP_001023455.1 | phage tail fiber C-terminal domain-containing protein | - |
| P411_RS28200 (182952) | 182952..183329 | + | 378 | WP_248699414.1 | hypothetical protein | - |
| P411_RS28205 (183359) | 183359..183541 | + | 183 | WP_235815774.1 | T3SS effector NleG family protein | - |
| P411_RS01375 (183591) | 183591..185963 | + | 2373 | WP_032240258.1 | hypothetical protein | VF |
| P411_RS01380 (186190) | 186190..186729 | + | 540 | Protein_191 | hypothetical protein | VF |
| P411_RS01385 (186762) | 186762..187016 | - | 255 | Protein_192 | IS66 family transposase IS682 | Transposase |
| P411_RS01390 (187073) | 187073..188286 | + | 1214 | WP_220541656.1 | IS3 family transposase IS629 | Transposase |
| P411_RS01395 (188521) | 188521..188853 | - | 333 | WP_001317460.1 | FlxA-like family protein | - |
| P411_RS01400 (189056) | 189056..189361 | - | 306 | WP_001326990.1 | protein YdfV | - |
| P411_RS01405 (189386) | 189386..189625 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| P411_RS01410 (189625) | 189625..189912 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| P411_RS01415 (189984) | 189984..190139 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| P411_RS01420 (190356) | 190356..190607 | + | 252 | WP_000980994.1 | protein Rem | - |
| P411_RS01425 (190674) | 190674..190952 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| P411_RS01430 (190954) | 190954..192003 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| P411_RS01435 (192017) | 192017..192769 | + | 753 | WP_001047137.1 | antitermination protein | - |
| P411_RS01440 (193047) | 193047..193136 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| P411_RS01445 (193191) | 193191..193403 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| P411_RS01450 (193704) | 193704..193919 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| P411_RS01455 (194283) | 194283..194453 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| P411_RS01460 (194673) | 194673..194888 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| P411_RS28210 (194893) | 194893..195138 | + | 246 | WP_259407093.1 | YdfR family protein | - |
| P411_RS01475 (196287) | 196287..196517 | + | 231 | Protein_210 | YdfR family protein | - |
| P411_RS01480 (196514) | 196514..197047 | + | 534 | WP_032361547.1 | lysozyme | - |
| P411_RS01485 (197044) | 197044..197541 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| P411_RS01490 (197903) | 197903..198115 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| P411_RS01495 (198126) | 198126..198314 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| P411_RS01500 (198317) | 198317..198382 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| P411_RS01505 (198462) | 198462..198617 | + | 156 | WP_001309517.1 | protein YnfN | - |
| P411_RS01510 (198789) | 198789..198962 | + | 174 | WP_001019139.1 | addiction module toxin, GnsA/GnsB family | - |
| P411_RS01515 (199114) | 199114..199545 | - | 432 | WP_000035576.1 | DUF1398 domain-containing protein | - |
| P411_RS01520 (199846) | 199846..200052 | + | 207 | WP_001031431.1 | hypothetical protein | - |
| P411_RS01525 (200625) | 200625..201152 | + | 528 | WP_001595800.1 | DUF1441 family protein | - |
| P411_RS01530 (201161) | 201161..203260 | + | 2100 | WP_000507036.1 | phage terminase large subunit family protein | - |
| P411_RS01535 (203257) | 203257..203469 | + | 213 | WP_001072975.1 | hypothetical protein | - |
| P411_RS01540 (203469) | 203469..204977 | + | 1509 | WP_000985929.1 | phage portal protein | - |
| P411_RS01545 (204922) | 204922..206949 | + | 2028 | WP_085961166.1 | hypothetical protein | VF |
| P411_RS01550 (207036) | 207036..207359 | + | 324 | WP_001097039.1 | DUF2190 family protein | - |
| P411_RS01555 (207352) | 207352..207627 | + | 276 | WP_001283153.1 | DNA breaking-rejoining protein | - |
| P411_RS01560 (207639) | 207639..208217 | + | 579 | WP_000677102.1 | phage tail protein | - |
| P411_RS01565 (208214) | 208214..208615 | + | 402 | WP_001079419.1 | phage minor tail U family protein | - |
| P411_RS01570 (208626) | 208626..209369 | + | 744 | WP_000211114.1 | phage tail protein | - |
| P411_RS01575 (209430) | 209430..209816 | + | 387 | WP_001299384.1 | phage minor tail protein G | - |
| P411_RS01580 (209825) | 209825..210154 | + | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| P411_RS01585 (210126) | 210126..213191 | + | 3066 | WP_032361545.1 | phage tail tape measure protein | - |
| P411_RS01590 (213191) | 213191..213520 | + | 330 | WP_000447248.1 | phage tail protein | - |
| P411_RS01595 (213530) | 213530..214228 | + | 699 | WP_001152402.1 | phage minor tail protein L | - |
| P411_RS01600 (214234) | 214234..214332 | + | 99 | Protein_235 | phage tail protein | - |
| P411_RS01605 (214370) | 214370..215908 | - | 1539 | WP_000099202.1 | IS66 family transposase ISEc22 | Transposase |
| P411_RS01610 (215957) | 215957..216304 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| P411_RS01615 (216301) | 216301..216705 | - | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| P411_RS01620 (216786) | 216786..217439 | + | 654 | Protein_239 | C40 family peptidase | - |
| P411_RS01625 (217403) | 217403..217978 | + | 576 | WP_231354053.1 | tail assembly protein | - |
| P411_RS01630 (218039) | 218039..221452 | + | 3414 | WP_000515310.1 | host specificity protein J | - |
| P411_RS01635 (221522) | 221522..222121 | + | 600 | WP_001230288.1 | hypothetical protein | VF |
| P411_RS01640 (222186) | 222186..225146 | + | 2961 | WP_000279077.1 | prophage tail fiber N-terminal domain-containing protein | - |
| P411_RS01645 (225146) | 225146..225721 | + | 576 | WP_000885616.1 | tail fiber assembly protein | - |
| P411_RS01650 (225819) | 225819..226409 | - | 591 | WP_000086514.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| P411_RS01655 (226726) | 226726..226959 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| P411_RS01660 (227028) | 227028..227141 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| P411_RS01665 (227745) | 227745..229028 | + | 1284 | Protein_248 | MHS family MFS transporter YdfJ | - |
| P411_RS01670 (229117) | 229117..230577 | + | 1461 | WP_000527753.1 | mannitol dehydrogenase family protein | - |
| P411_RS01675 (230613) | 230613..230816 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| P411_RS01680 (230994) | 230994..231680 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| P411_RS01685 (231769) | 231769..232515 | - | 747 | WP_000636571.1 | hypothetical protein | VF |
| P411_RS01690 (232652) | 232652..234697 | + | 2046 | WP_001299399.1 | peptidyl-dipeptidase Dcp | - |
| P411_RS01695 (234742) | 234742..235260 | - | 519 | WP_001024561.1 | 2-oxo-tetronate isomerase | - |
| P411_RS01700 (235536) | 235536..235928 | + | 393 | WP_032361756.1 | YdeI family stress tolerance OB fold protein | - |
| P411_RS01705 (236183) | 236183..237073 | + | 891 | WP_000592826.1 | diguanylate cyclase DgcZ | - |
| P411_RS01710 (237359) | 237359..237817 | + | 459 | WP_000526113.1 | IS200-IS605 family transposase IS200C | Transposase |
| P411_RS01715 (237926) | 237926..238003 | - | 78 | Protein_258 | protein MgtT | - |
| P411_RS01720 (238003) | 238003..238098 | - | 96 | WP_000901367.1 | protein MgtS | - |
| P411_RS01725 (238225) | 238225..239412 | - | 1188 | WP_001054162.1 | efflux MFS transporter YdeE | - |
| P411_RS01730 (239607) | 239607..240506 | + | 900 | WP_000087216.1 | O-acetylserine/cysteine exporter | - |
| P411_RS01735 (240551) | 240551..241249 | - | 699 | WP_000577184.1 | GntR family transcriptional regulator | - |
| P411_RS01740 (241448) | 241448..241759 | + | 312 | WP_000722571.1 | PTS sugar transporter subunit IIB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|