MGE detailed information
MGE type: Conjugative plasmid MGE length: 64010 bp
Accession: NZ_CP050997 Location: 1..64010 Organism: Escherichia coli O39:NM str. F8704-2 Replicon: plasmid pF8704-2_1
Accession: NZ_CP050997 Location: 1..64010 Organism: Escherichia coli O39:NM str. F8704-2 Replicon: plasmid pF8704-2_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P411_RS00005 | 3..197 | + | 195 | WP_044697101.1 | hypothetical protein | - |
| P411_RS00010 | 463..711 | + | 249 | WP_071606928.1 | hypothetical protein | - |
| P411_RS00015 | 1182..1478 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| P411_RS00020 | 1588..2409 | + | 822 | WP_001234437.1 | DUF932 domain-containing protein | - |
| P411_RS00025 | 2704..3294 | - | 591 | WP_000252684.1 | hypothetical protein | VF |
| P411_RS00030 | 3629..4012 | + | 384 | WP_001342639.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| P411_RS00035 | 4203..4856 | + | 654 | WP_001342640.1 | conjugal transfer protein TraJ | - |
| P411_RS00040 | 4981..5208 | + | 228 | WP_000089263.1 | conjugal transfer relaxosome protein TraY | - |
| P411_RS00045 | 5241..5603 | + | 363 | WP_001098998.1 | type IV conjugative transfer system pilin TraA | - |
| P411_RS00050 | 5608..5919 | + | 312 | WP_000012097.1 | type IV conjugative transfer system protein TraL | - |
| P411_RS00055 | 5941..6507 | + | 567 | WP_000399805.1 | type IV conjugative transfer system protein TraE | - |
| P411_RS00060 | 6494..7222 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| P411_RS00065 | 7222..8649 | + | 1428 | WP_001462160.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| P411_RS00070 | 8639..9223 | + | 585 | WP_000002795.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| P411_RS00075 | 9210..9530 | + | 321 | WP_001057302.1 | conjugal transfer protein TrbD | - |
| P411_RS00080 | 9523..9773 | + | 251 | Protein_15 | conjugal transfer protein TrbG | - |
| P411_RS00085 | 9770..10318 | + | 549 | WP_032165318.1 | type IV conjugative transfer system lipoprotein TraV | - |
| P411_RS00090 | 10453..10674 | + | 222 | WP_001278978.1 | conjugal transfer protein TraR | - |
| P411_RS00095 | 10667..11143 | + | 477 | WP_000549587.1 | hypothetical protein | - |
| P411_RS00100 | 11223..11441 | + | 219 | WP_000556745.1 | hypothetical protein | - |
| P411_RS00105 | 11469..11816 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| P411_RS00110 | 11942..12571 | + | 630 | Protein_21 | TraC family protein | - |
| P411_RS00115 | 12736..13365 | + | 630 | Protein_22 | TraC family protein | - |
| P411_RS00120 | 13530..16160 | + | 2631 | WP_000069752.1 | type IV secretion system protein TraC | - |
| P411_RS00125 | 16157..16543 | + | 387 | WP_000214082.1 | type-F conjugative transfer system protein TrbI | - |
| P411_RS00130 | 16540..17171 | + | 632 | Protein_25 | type-F conjugative transfer system protein TraW | - |
| P411_RS00135 | 17168..18160 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| P411_RS00140 | 18190..18495 | + | 306 | WP_000224411.1 | hypothetical protein | - |
| P411_RS00145 | 18504..19142 | + | 639 | WP_001080257.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| P411_RS00150 | 19139..20947 | + | 1809 | WP_000821863.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| P411_RS00155 | 20974..21231 | + | 258 | WP_000864345.1 | conjugal transfer protein TrbE | - |
| P411_RS00160 | 21224..21967 | + | 744 | WP_001030400.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| P411_RS00165 | 21983..22321 | + | 339 | WP_001287901.1 | conjugal transfer protein TrbA | - |
| P411_RS00170 | 22448..22732 | + | 285 | WP_000623730.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| P411_RS00175 | 22719..23264 | + | 546 | WP_000059829.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| P411_RS00180 | 23194..23535 | + | 342 | WP_001448115.1 | P-type conjugative transfer protein TrbJ | - |
| P411_RS00185 | 23516..23908 | + | 393 | WP_000660703.1 | F-type conjugal transfer protein TrbF | - |
| P411_RS00190 | 23895..25268 | + | 1374 | WP_001137361.1 | conjugal transfer pilus assembly protein TraH | - |
| P411_RS00195 | 25265..28090 | + | 2826 | WP_001007058.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| P411_RS00200 | 28087..28596 | + | 510 | WP_000628099.1 | conjugal transfer entry exclusion protein TraS | - |
| P411_RS00205 | 28610..29341 | + | 732 | WP_000850429.1 | conjugal transfer complement resistance protein TraT | - |
| P411_RS00210 | 29544..30281 | + | 738 | WP_000199910.1 | hypothetical protein | - |
| P411_RS00215 | 30332..32566 | + | 2235 | WP_220541633.1 | type IV conjugative transfer system coupling protein TraD | - |
| P411_RS00220 | 32566..37836 | + | 5271 | WP_032361711.1 | Multifunctional conjugation protein TraI | Relaxase |
| P411_RS00225 | 37856..38602 | + | 747 | WP_000205726.1 | conjugal transfer pilus acetylase TraX | - |
| P411_RS00230 | 38657..39217 | + | 561 | WP_000139326.1 | fertility inhibition protein FinO | - |
| P411_RS00235 | 39336..39548 | + | 213 | WP_001301409.1 | ANR family transcriptional regulator | - |
| P411_RS00240 | 39835..40512 | + | 678 | WP_032165333.1 | PIN domain-containing protein | - |
| P411_RS00245 | 41178..41369 | + | 192 | WP_071528006.1 | hypothetical protein | - |
| P411_RS00250 | 41613..42073 | + | 461 | Protein_49 | thermonuclease family protein | - |
| P411_RS00255 | 42119..42328 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| P411_RS00260 | 42366..42956 | + | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
| P411_RS00265 | 43196..43444 | + | 249 | WP_000083839.1 | replication regulatory protein RepA | - |
| P411_RS28160 | 43559..43739 | + | 181 | Protein_53 | protein CopA/IncA | - |
| P411_RS00275 | 43758..44630 | + | 873 | WP_220541634.1 | incFII family plasmid replication initiator RepA | - |
| P411_RS00280 | 45317..45457 | + | 141 | WP_000829596.1 | hypothetical protein | - |
| P411_RS00285 | 45530..45799 | + | 270 | WP_000079945.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| P411_RS00290 | 45799..46077 | + | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| P411_RS00295 | 46149..46327 | + | 179 | Protein_58 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| P411_RS00300 | 46398..47279 | + | 882 | WP_000005460.1 | hypothetical protein | - |
| P411_RS00305 | 47214..47633 | - | 420 | WP_024181414.1 | hypothetical protein | - |
| P411_RS00310 | 47723..50727 | - | 3005 | Protein_61 | Tn3 family transposase TnpA_Tn3 | Transposase |
| P411_RS00315 | 50891..51448 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| P411_RS00320 | 51631..52491 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| P411_RS00325 | 52696..53046 | - | 351 | WP_001414994.1 | plasmid partitioning/stability family protein | - |
| P411_RS00330 | 53049..54011 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| P411_RS28165 | 54182..54451 | + | 270 | WP_072126982.1 | hypothetical protein | - |
| P411_RS00335 | 54546..55448 | + | 903 | WP_001513647.1 | DUF1281 domain-containing protein | - |
| P411_RS00340 | 55445..55756 | + | 312 | WP_032144809.1 | hypothetical protein | - |
| P411_RS00345 | 55833..56516 | + | 684 | WP_000085884.1 | DNA methylase | - |
| P411_RS00350 | 56517..56738 | + | 222 | WP_001104865.1 | hypothetical protein | - |
| P411_RS00355 | 56668..57186 | + | 519 | WP_223156508.1 | DUF1380 family protein | - |
| P411_RS00360 | 57231..58001 | + | 771 | WP_001006247.1 | hypothetical protein | - |
| P411_RS00365 | 58417..58842 | + | 426 | WP_001198895.1 | antirestriction protein | - |
| P411_RS00370 | 58889..59311 | + | 423 | WP_000271709.1 | DUF1380 family protein | - |
| P411_RS00375 | 59308..59499 | + | 192 | WP_032165358.1 | hypothetical protein | - |
| P411_RS00380 | 59819..60412 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| P411_RS00385 | 60525..61730 | - | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| P411_RS00390 | 61812..62435 | + | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| P411_RS28170 | 62419..62649 | + | 231 | WP_071703863.1 | hypothetical protein | - |
| P411_RS28175 | 62647..62850 | - | 204 | Protein_80 | hypothetical protein | - |
| P411_RS00400 | 63313..63543 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| P411_RS00405 | 63595..64010 | + | 416 | WP_139818271.1 | DUF3560 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|