MGE detailed information
MGE type: Prophage MGE length: 122356 bp
Accession: NZ_CP050855 Location: 2081..124436 Organism: Serratia symbiotica strain CWBI-2.3 Replicon: chromosome
Accession: NZ_CP050855 Location: 2081..124436 Organism: Serratia symbiotica strain CWBI-2.3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SYMBAF_RS00005 () | 694..2076 | + | 1383 | WP_152609056.1 | chromosomal replication initiator protein DnaA | - |
| SYMBAF_RS00010 () | 2081..3181 | + | 1101 | WP_040264140.1 | DNA polymerase III subunit beta | - |
| SYMBAF_RS00015 () | 3337..4422 | + | 1086 | WP_040264142.1 | DNA replication/repair protein RecF | - |
| SYMBAF_RS00020 () | 4441..6855 | + | 2415 | WP_040264144.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| SYMBAF_RS00025 () | 6952..7143 | + | 192 | Protein_4 | IS481 family transposase | - |
| SYMBAF_RS00030 () | 7496..7801 | - | 306 | Protein_5 | transposase | - |
| SYMBAF_RS00035 () | 7836..8289 | + | 454 | Protein_6 | IS1 family transposase | - |
| SYMBAF_RS00040 () | 8477..9691 | + | 1215 | WP_040264152.1 | multidrug effflux MFS transporter | - |
| SYMBAF_RS00045 () | 9688..10629 | + | 942 | WP_040264154.1 | 3-hydroxy-3-methylglutaryl-CoA lyase | - |
| SYMBAF_RS00050 () | 10626..11342 | + | 717 | WP_052447654.1 | alpha/beta hydrolase | - |
| SYMBAF_RS00055 () | 11339..13498 | + | 2160 | WP_040264156.1 | isocitrate/isopropylmalate dehydrogenase family protein | - |
| SYMBAF_RS00060 () | 13491..14177 | + | 687 | WP_052447655.1 | dimethylmenaquinone methyltransferase | - |
| SYMBAF_RS00065 () | 14174..15067 | + | 894 | WP_040264158.1 | hypothetical protein | - |
| SYMBAF_RS00070 () | 15033..15923 | - | 891 | WP_040264160.1 | LysR family transcriptional regulator | - |
| SYMBAF_RS00075 () | 16508..16624 | - | 117 | Protein_14 | IS1 family transposase | - |
| SYMBAF_RS00085 () | 17874..18389 | + | 516 | WP_160289779.1 | transposase | - |
| SYMBAF_RS00090 () | 18625..18954 | + | 330 | WP_052447656.1 | ISNCY family transposase ISBj12 | Transposase |
| SYMBAF_RS00095 () | 18927..20126 | + | 1200 | WP_052447657.1 | ISNCY family transposase ISBj12 | Transposase |
| SYMBAF_RS00100 () | 20255..20533 | + | 279 | WP_152609058.1 | hypothetical protein | - |
| SYMBAF_RS00105 () | 20602..21879 | + | 1278 | WP_185899934.1 | MFS transporter | - |
| SYMBAF_RS00110 () | 21876..23609 | + | 1734 | WP_185899909.1 | ThiF family adenylyltransferase | - |
| SYMBAF_RS00115 () | 23599..24323 | + | 725 | Protein_22 | methyltransferase domain-containing protein | - |
| SYMBAF_RS00120 () | 24311..25138 | + | 828 | WP_185899910.1 | YqcI/YcgG family protein | - |
| SYMBAF_RS00125 () | 25141..25932 | + | 792 | WP_185899911.1 | methyltransferase domain-containing protein | - |
| SYMBAF_RS00130 () | 25932..27095 | + | 1164 | WP_040264090.1 | diaminopimelate decarboxylase | - |
| SYMBAF_RS00135 () | 27073..27630 | + | 558 | WP_040264088.1 | GNAT family N-acetyltransferase | - |
| SYMBAF_RS00140 () | 27986..29517 | + | 1532 | Protein_27 | IS3 family transposase | - |
| SYMBAF_RS00145 () | 29748..30568 | + | 821 | Protein_28 | DUF1311 domain-containing protein | - |
| SYMBAF_RS00150 () | 30703..31743 | + | 1041 | WP_040264086.1 | IS481 family transposase ISErsp1 | Transposase |
| SYMBAF_RS00155 () | 32174..33037 | - | 864 | WP_040264084.1 | YicC family protein | - |
| SYMBAF_RS00160 () | 33159..33875 | + | 717 | WP_006709062.1 | ribonuclease PH | - |
| SYMBAF_RS00165 () | 34496..34744 | - | 249 | WP_064767481.1 | ogr/Delta-like zinc finger family protein | - |
| SYMBAF_RS00170 () | 34784..35920 | - | 1137 | WP_040264082.1 | phage late control D family protein | - |
| SYMBAF_RS00175 () | 36073..37254 | + | 1182 | WP_040264092.1 | phage tail sheath family protein | - |
| SYMBAF_RS00180 () | 37255..37770 | + | 516 | WP_006117904.1 | phage major tail tube protein | - |
| SYMBAF_RS00185 () | 37818..38135 | + | 318 | WP_040264587.1 | phage tail assembly protein | - |
| SYMBAF_RS00190 () | 38141..38296 | + | 156 | WP_032424037.1 | GpE family phage tail protein | - |
| SYMBAF_RS00195 () | 38283..41249 | + | 2967 | WP_040264633.1 | phage tail tape measure protein | - |
| SYMBAF_RS00200 () | 41264..41752 | + | 489 | WP_040264586.1 | phage tail protein | - |
| SYMBAF_RS00205 () | 41907..42299 | - | 393 | WP_040264585.1 | tail fiber assembly protein | - |
| SYMBAF_RS00210 () | 42299..43531 | - | 1233 | WP_040264584.1 | phage tail protein | - |
| SYMBAF_RS00215 () | 43521..44135 | - | 615 | WP_040264583.1 | phage tail protein I | - |
| SYMBAF_RS00220 () | 44128..45024 | - | 897 | WP_040264582.1 | baseplate J/gp47 family protein | - |
| SYMBAF_RS00225 () | 45011..45379 | - | 369 | WP_040264581.1 | GPW/gp25 family protein | - |
| SYMBAF_RS00230 () | 45376..45951 | - | 576 | WP_040264580.1 | phage baseplate assembly protein V | - |
| SYMBAF_RS00235 () | 45948..46586 | - | 639 | WP_040264579.1 | phage virion morphogenesis protein | - |
| SYMBAF_RS00240 () | 46579..47049 | - | 471 | WP_040264578.1 | phage tail protein | - |
| SYMBAF_RS00245 () | 47151..47363 | - | 213 | WP_185899900.1 | peptidase | - |
| SYMBAF_RS00250 () | 47260..47697 | - | 438 | WP_040264577.1 | DUF2570 domain-containing protein | - |
| SYMBAF_RS00255 () | 47694..48239 | - | 546 | WP_040264576.1 | lysozyme | - |
| SYMBAF_RS00260 () | 48223..48525 | - | 303 | WP_040264575.1 | hypothetical protein | - |
| SYMBAF_RS00265 () | 48516..48716 | - | 201 | WP_040264574.1 | tail protein X | - |
| SYMBAF_RS00270 () | 48716..49240 | - | 525 | WP_040264573.1 | head completion/stabilization protein | - |
| SYMBAF_RS00275 () | 49339..50196 | - | 858 | WP_040264572.1 | terminase | - |
| SYMBAF_RS00280 () | 50242..51291 | - | 1050 | WP_160744431.1 | phage major capsid protein, P2 family | - |
| SYMBAF_RS00285 () | 51315..52151 | - | 837 | WP_040264570.1 | GPO family capsid scaffolding protein | - |
| SYMBAF_RS00290 () | 52311..54041 | + | 1731 | WP_040264569.1 | terminase family protein | - |
| SYMBAF_RS00295 () | 54041..55099 | + | 1059 | WP_040264568.1 | phage portal protein | - |
| SYMBAF_RS00300 () | 55551..55934 | - | 384 | WP_040264567.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| SYMBAF_RS00305 () | 55931..56152 | - | 222 | WP_006117881.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| SYMBAF_RS00310 () | 56219..56915 | - | 697 | Protein_61 | DNA adenine methylase | - |
| SYMBAF_RS00315 () | 57069..59453 | - | 2385 | WP_040264566.1 | replication endonuclease | - |
| SYMBAF_RS00320 () | 59450..60478 | - | 1029 | WP_040264631.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| SYMBAF_RS00325 () | 60624..60860 | - | 237 | WP_040264565.1 | hypothetical protein | - |
| SYMBAF_RS00330 () | 60860..61798 | - | 939 | WP_040264564.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| SYMBAF_RS00335 () | 61868..62260 | - | 393 | WP_040264563.1 | hypothetical protein | - |
| SYMBAF_RS00340 () | 62433..62609 | + | 177 | WP_160289784.1 | hypothetical protein | - |
| SYMBAF_RS00345 () | 62610..62975 | - | 366 | WP_152609071.1 | hypothetical protein | - |
| SYMBAF_RS00350 () | 63086..63313 | - | 228 | WP_040264560.1 | DUF2724 domain-containing protein | - |
| SYMBAF_RS00355 () | 63326..63499 | - | 174 | WP_162835903.1 | hypothetical protein | - |
| SYMBAF_RS00360 () | 63489..63749 | - | 261 | WP_052447685.1 | DUF4761 family protein | - |
| SYMBAF_RS00365 () | 63815..64207 | - | 393 | WP_173424337.1 | hypothetical protein | - |
| SYMBAF_RS00370 () | 64508..64924 | - | 417 | WP_173424339.1 | hypothetical protein | - |
| SYMBAF_RS00375 () | 65038..65337 | + | 300 | WP_082026880.1 | helix-turn-helix domain-containing protein | - |
| SYMBAF_RS00380 () | 65252..65656 | - | 405 | WP_152609070.1 | hypothetical protein | - |
| SYMBAF_RS00385 () | 65764..66063 | + | 300 | WP_040264559.1 | helix-turn-helix domain-containing protein | - |
| SYMBAF_RS00390 () | 66130..67140 | + | 1011 | WP_040264558.1 | hypothetical protein ; Integrase | Integrase |
| SYMBAF_RS00395 () | 67301..67942 | + | 642 | WP_040264557.1 | orotate phosphoribosyltransferase | - |
| SYMBAF_RS00400 () | 67977..68573 | - | 597 | WP_040264556.1 | nucleoid occlusion factor SlmA | - |
| SYMBAF_RS00405 () | 68808..69266 | - | 459 | WP_006709065.1 | dUTP diphosphatase | - |
| SYMBAF_RS00410 () | 69244..70461 | - | 1218 | WP_040264626.1 | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC | - |
| SYMBAF_RS00415 () | 70644..71327 | + | 684 | WP_040264555.1 | DNA repair protein RadC | - |
| SYMBAF_RS00420 () | 71572..71808 | + | 237 | WP_004931195.1 | 50S ribosomal protein L28 | - |
| SYMBAF_RS00425 () | 71820..71987 | + | 168 | WP_004392084.1 | 50S ribosomal protein L33 | - |
| SYMBAF_RS00430 () | 72069..72884 | + | 816 | WP_040264554.1 | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | - |
| SYMBAF_RS00435 () | 72889..73374 | - | 486 | WP_040264553.1 | hypothetical protein | VF |
| SYMBAF_RS00440 () | 73378..74151 | - | 774 | WP_040264552.1 | hypothetical protein | VF |
| SYMBAF_RS00445 () | 74152..75429 | - | 1278 | WP_040264551.1 | hypothetical protein | VF |
| SYMBAF_RS00450 () | 75553..76547 | + | 995 | Protein_89 | glycosyltransferase family 9 protein | - |
| SYMBAF_RS00455 () | 76582..77679 | - | 1098 | WP_040264550.1 | glycosyltransferase | - |
| SYMBAF_RS00460 () | 77682..78809 | - | 1128 | WP_040264549.1 | glycosyltransferase family 4 protein | - |
| SYMBAF_RS00465 () | 78806..79888 | - | 1083 | WP_040264548.1 | putative lipopolysaccharide heptosyltransferase III | - |
| SYMBAF_RS00470 () | 80091..81047 | + | 957 | WP_040264547.1 | polysaccharide deacetylase family protein | - |
| SYMBAF_RS00475 () | 81054..82136 | + | 1083 | WP_040264546.1 | glycosyltransferase family 9 protein | - |
| SYMBAF_RS00480 () | 82180..83421 | - | 1242 | WP_040264545.1 | O-antigen ligase family protein | - |
| SYMBAF_RS00485 () | 83431..84450 | - | 1020 | WP_040264544.1 | glycosyl transferase | - |
| SYMBAF_RS00490 () | 84435..85367 | - | 933 | WP_040264543.1 | glycosyltransferase family 2 protein | - |
| SYMBAF_RS00495 () | 85403..86365 | - | 963 | WP_040264542.1 | hypothetical protein | VF |
| SYMBAF_RS00500 () | 86368..87414 | - | 1047 | WP_006708387.1 | hypothetical protein | VF |
| SYMBAF_RS00505 () | 87421..88356 | - | 936 | WP_040264541.1 | hypothetical protein | VF |
| SYMBAF_RS00510 () | 88588..89532 | - | 945 | WP_040264540.1 | divergent polysaccharide deacetylase family protein | - |
| SYMBAF_RS00515 () | 89535..90857 | - | 1323 | WP_040264539.1 | murein hydrolase activator EnvC | - |
| SYMBAF_RS00520 () | 91139..91573 | + | 435 | WP_040264538.1 | rhodanese-like domain-containing protein | - |
| SYMBAF_RS00525 () | 91602..91850 | + | 249 | WP_040264537.1 | glutaredoxin 3 | - |
| SYMBAF_RS00530 () | 91909..92379 | + | 471 | WP_040264536.1 | protein-export chaperone SecB | - |
| SYMBAF_RS00535 () | 92379..93398 | + | 1020 | WP_040264535.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| SYMBAF_RS00540 () | 93505..94326 | + | 822 | WP_040264534.1 | hypothetical protein | VF |
| SYMBAF_RS00545 () | 94731..95351 | - | 621 | WP_040264533.1 | hypothetical protein | VF |
| SYMBAF_RS00550 () | 95750..98805 | + | 3056 | Protein_109 | formate dehydrogenase-N subunit alpha | - |
| SYMBAF_RS00555 () | 98818..99714 | + | 897 | WP_040264531.1 | formate dehydrogenase subunit beta | - |
| SYMBAF_RS00560 () | 99714..100349 | + | 636 | WP_040264530.1 | formate dehydrogenase cytochrome b556 subunit | - |
| SYMBAF_RS00565 () | 100349..101278 | + | 930 | WP_040264529.1 | formate dehydrogenase accessory protein FdhE | - |
| SYMBAF_RS00570 () | 101493..102884 | + | 1392 | WP_040264528.1 | L-seryl-tRNA(Sec) selenium transferase | - |
| SYMBAF_RS00575 () | 102881..104722 | + | 1842 | WP_040264527.1 | selenocysteine-specific translation elongation factor | - |
| SYMBAF_RS00580 () | 104767..105975 | - | 1209 | WP_040264526.1 | MFS transporter | - |
| SYMBAF_RS00590 () | 106606..107112 | + | 507 | Protein_116 | integrase arm-type DNA-binding domain-containing protein | - |
| SYMBAF_RS00595 () | 107185..108353 | + | 1169 | WP_152609001.1 | IS3 family transposase ISLad1 | Transposase |
| SYMBAF_RS00600 () | 108362..108541 | + | 180 | Protein_118 | IS3 family transposase | - |
| SYMBAF_RS00605 () | 108603..109133 | - | 531 | WP_006708724.1 | inorganic diphosphatase | - |
| SYMBAF_RS00610 () | 109239..110243 | - | 1005 | WP_040264525.1 | class 1 fructose-bisphosphatase | - |
| SYMBAF_RS00615 () | 110416..111780 | + | 1365 | WP_040264524.1 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | - |
| SYMBAF_RS00620 () | 111991..112461 | - | 471 | WP_040264523.1 | transcriptional regulator ArgR | - |
| SYMBAF_RS00625 () | 112903..113841 | + | 939 | WP_040264522.1 | malate dehydrogenase | - |
| SYMBAF_RS00630 () | 113909..114169 | - | 261 | WP_040264521.1 | helix-turn-helix domain-containing protein | - |
| SYMBAF_RS00635 () | 114349..114699 | + | 351 | WP_040264624.1 | putative DNA-binding transcriptional regulator | - |
| SYMBAF_RS00640 () | 115065..115415 | + | 351 | WP_006709337.1 | putative DNA-binding transcriptional regulator | - |
| SYMBAF_RS00645 () | 115473..116444 | - | 972 | WP_040264520.1 | octaprenyl diphosphate synthase | - |
| SYMBAF_RS00650 () | 116717..117028 | + | 312 | WP_006709339.1 | 50S ribosomal protein L21 | - |
| SYMBAF_RS00655 () | 117046..117303 | + | 258 | WP_006709340.1 | 50S ribosomal protein L27 | - |
| SYMBAF_RS00660 () | 117679..118833 | + | 1155 | WP_040264519.1 | Obg family GTPase CgtA | - |
| SYMBAF_RS00665 () | 119141..120574 | - | 1434 | WP_040264518.1 | serine-type D-Ala-D-Ala carboxypeptidase | - |
| SYMBAF_RS00670 () | 120806..121282 | + | 477 | WP_006709344.1 | transcription elongation factor GreA | - |
| SYMBAF_RS00675 () | 121397..121690 | - | 294 | WP_040264517.1 | ribosome assembly RNA-binding protein YhbY | - |
| SYMBAF_RS00680 () | 121834..122463 | + | 630 | WP_040264516.1 | 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE | - |
| SYMBAF_RS00685 () | 122520..124436 | + | 1917 | WP_040264515.1 | ATP-dependent zinc metalloprotease FtsH | - |
| SYMBAF_RS00690 () | 124861..125697 | + | 837 | WP_006709348.1 | dihydropteroate synthase | - |
| SYMBAF_RS00695 () | 125702..127051 | + | 1350 | WP_040264514.1 | phosphoglucosamine mutase | - |
| SYMBAF_RS00700 () | 127240..127575 | + | 336 | WP_040264513.1 | preprotein translocase subunit SecG | - |
| SYMBAF_RS00715 () | 128086..128538 | + | 453 | WP_071837606.1 | ribosome maturation factor RimP | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|