MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 110163 bp
Accession: NZ_CP050736 Location: 1..110163 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ST90 Replicon: plasmid pST90-2
Accession: NZ_CP050736 Location: 1..110163 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ST90 Replicon: plasmid pST90-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HEC90_RS24775 () | 1237..1681 | - | 445 | Protein_1 | site-specific integrase | - |
| HEC90_RS24780 () | 1850..2231 | - | 382 | Protein_2 | YgiW/YdeI family stress tolerance OB fold protein | - |
| HEC90_RS24785 () | 2950..3252 | + | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| HEC90_RS24790 () | 3527..4045 | + | 519 | WP_000748205.1 | major pilin PefA | - |
| HEC90_RS24795 () | 4273..6681 | + | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| HEC90_RS24800 () | 6674..7366 | + | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| HEC90_RS24805 () | 7510..8214 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HEC90_RS24810 () | 8274..8546 | - | 273 | Protein_8 | recombinase family protein | - |
| HEC90_RS24815 () | 8753..9493 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| HEC90_RS24820 () | 10148..10636 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| HEC90_RS24825 () | 10895..12010 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| HEC90_RS24830 () | 12096..12512 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| HEC90_RS24835 () | 12696..13031 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| HEC90_RS24840 () | 13088..13654 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| HEC90_RS24845 () | 13686..14627 | - | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| HEC90_RS24850 () | 15042..16247 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| HEC90_RS24855 () | 16247..17221 | + | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| HEC90_RS24860 () | 17303..18577 | - | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| HEC90_RS24865 () | 18577..18999 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HEC90_RS24870 () | 19510..19980 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| HEC90_RS24875 () | 19973..20329 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| HEC90_RS24880 () | 20711..21391 | + | 681 | WP_000088645.1 | DNA methylase | - |
| HEC90_RS24885 () | 21391..21612 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| HEC90_RS24890 () | 21668..22081 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| HEC90_RS24895 () | 22153..22917 | + | 765 | WP_001246548.1 | membrane protein | - |
| HEC90_RS24905 () | 23413..23847 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| HEC90_RS24910 () | 23914..24348 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| HEC90_RS24915 () | 24584..24907 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| HEC90_RS24920 () | 25608..26126 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| HEC90_RS24925 () | 26181..26423 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| HEC90_RS24930 () | 26492..28489 | + | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| HEC90_RS24935 () | 28529..28963 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| HEC90_RS24940 () | 28960..29697 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| HEC90_RS24945 () | 29946..30104 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| HEC90_RS24950 () | 30207..31025 | + | 819 | Protein_35 | DUF945 domain-containing protein | - |
| HEC90_RS24955 () | 31336..31806 | - | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| HEC90_RS24960 () | 32221..32601 | + | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| HEC90_RS24965 () | 32794..33480 | + | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| HEC90_RS24970 () | 33574..33801 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| HEC90_RS24975 () | 33843..34205 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| HEC90_RS24980 () | 34220..34531 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| HEC90_RS24985 () | 34553..35119 | + | 567 | WP_000399769.1 | type IV conjugative transfer system protein TraE | - |
| HEC90_RS24990 () | 35106..35846 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| HEC90_RS24995 () | 35846..37267 | + | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| HEC90_RS25000 () | 37257..37853 | + | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| HEC90_RS25005 () | 37831..38076 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| HEC90_RS25010 () | 38073..38588 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HEC90_RS25015 () | 38723..38944 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| HEC90_RS25020 () | 38937..39404 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| HEC90_RS25025 () | 39521..39784 | + | 264 | WP_001239256.1 | hypothetical protein | - |
| HEC90_RS25030 () | 39800..42448 | + | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| HEC90_RS25035 () | 42423..42809 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| HEC90_RS25040 () | 42806..43438 | + | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| HEC90_RS25045 () | 43435..44427 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| HEC90_RS25050 () | 44446..44754 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| HEC90_RS25055 () | 44739..45377 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HEC90_RS25060 () | 45414..45833 | + | 420 | WP_001229397.1 | HNH endonuclease | - |
| HEC90_RS25065 () | 45830..47656 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HEC90_RS25070 () | 47667..47882 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| HEC90_RS25075 () | 47894..48643 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HEC90_RS25080 () | 48857..49150 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HEC90_RS25085 () | 49137..49685 | + | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HEC90_RS25090 () | 49675..51057 | + | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| HEC90_RS25095 () | 51054..53876 | + | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HEC90_RS25100 () | 53892..54386 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| HEC90_RS25105 () | 54422..55153 | + | 732 | WP_000782438.1 | complement resistance protein TraT | - |
| HEC90_RS25110 () | 55530..57755 | + | 2226 | WP_080218652.1 | type IV conjugative transfer system coupling protein TraD | - |
| HEC90_RS25115 () | 57764..58162 | - | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| HEC90_RS25120 () | 58162..58389 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| HEC90_RS25125 () | 58471..63729 | + | 5259 | WP_000986921.1 | conjugative transfer relaxase/helicase TraI | - |
| HEC90_RS25130 () | 63749..64489 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| HEC90_RS25135 () | 64544..65107 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| HEC90_RS25140 () | 65222..65506 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| HEC90_RS25145 () | 65519..65674 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| HEC90_RS25150 () | 65840..66282 | + | 443 | Protein_75 | phospholipase | - |
| HEC90_RS25155 () | 66461..66727 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| HEC90_RS25160 () | 66977..67054 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| HEC90_RS25165 () | 67035..67916 | + | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| HEC90_RS25170 () | 68776..68997 | + | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| HEC90_RS25175 () | 69094..69852 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| HEC90_RS25180 () | 70119..70676 | - | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| HEC90_RS25185 () | 70766..71479 | - | 714 | WP_167810549.1 | YjiK family protein | - |
| HEC90_RS25190 () | 71520..72197 | + | 678 | WP_001682408.1 | IS66-like element accessory protein TnpA | - |
| HEC90_RS25195 () | 72197..72544 | + | 348 | WP_000624622.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| HEC90_RS25200 () | 72564..74135 | + | 1572 | WP_000381395.1 | IS66 family transposase | - |
| HEC90_RS25205 () | 74166..74372 | - | 207 | Protein_86 | hypothetical protein | - |
| HEC90_RS25210 () | 74369..74515 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| HEC90_RS25215 () | 74505..75158 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| HEC90_RS25220 () | 75403..75753 | - | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| HEC90_RS25225 () | 75738..75950 | - | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| HEC90_RS25230 () | 76382..77257 | - | 876 | WP_014343944.1 | hypothetical protein | - |
| HEC90_RS25235 () | 77510..78037 | - | 528 | WP_167798735.1 | hypothetical protein | - |
| HEC90_RS25240 () | 78062..78766 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HEC90_RS25245 () | 79041..80054 | - | 1014 | WP_000845039.1 | class 1 integron integrase IntI1 | - |
| HEC90_RS25250 () | 80199..80696 | + | 498 | WP_001083725.1 | trimethoprim-resistant dihydrofolate reductase DfrA12 | - |
| HEC90_RS25255 () | 80808..81098 | + | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| HEC90_RS25260 () | 81104..81895 | + | 792 | WP_001206356.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2 | - |
| HEC90_RS25265 () | 82059..82406 | + | 348 | WP_000679427.1 | quaternary ammonium compound efflux SMR transporter QacE delta 1 | - |
| HEC90_RS25270 () | 82400..83239 | + | 840 | WP_000259031.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | - |
| HEC90_RS25275 () | 83367..83570 | + | 204 | WP_000376616.1 | hypothetical protein | - |
| HEC90_RS25280 () | 83726..84931 | + | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| HEC90_RS25285 () | 84942..85052 | + | 111 | Protein_102 | PadR family transcriptional regulator | - |
| HEC90_RS25290 () | 85107..85811 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HEC90_RS25295 () | 85868..86011 | - | 144 | Protein_104 | IS4 family transposase | - |
| HEC90_RS25300 () | 86154..87014 | + | 861 | WP_000557454.1 | aminoglycoside N-acetyltransferase AAC(3)-IId | - |
| HEC90_RS25305 () | 87027..87569 | + | 543 | WP_000587837.1 | AAA family ATPase | - |
| HEC90_RS25310 () | 88051..88242 | - | 192 | WP_000951934.1 | hypothetical protein | - |
| HEC90_RS25315 () | 88266..88493 | + | 228 | WP_000248278.1 | hypothetical protein | - |
| HEC90_RS25320 () | 88544..89680 | + | 1137 | WP_000080860.1 | DUF3883 domain-containing protein | - |
| HEC90_RS25330 () | 89967..90671 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HEC90_RS25335 () | 90724..91023 | + | 300 | Protein_111 | recombinase family protein | - |
| HEC90_RS25340 () | 91007..92671 | + | 1665 | WP_000098783.1 | IS481 family transposase | - |
| HEC90_RS25345 () | 92604..93629 | + | 1026 | WP_001576625.1 | ExeA family protein | - |
| HEC90_RS25350 () | 93818..94855 | - | 1038 | WP_001121399.1 | IS630 family transposase | - |
| HEC90_RS25355 () | 95464..96357 | + | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| HEC90_RS25360 () | 96531..96695 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| HEC90_RS25365 () | 96869..97636 | + | 768 | WP_001526990.1 | virulence protein SpvA | - |
| HEC90_RS25370 () | 97599..97766 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| HEC90_RS25375 () | 97818..99593 | + | 1776 | WP_001676648.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| HEC90_RS25380 () | 99875..100600 | + | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| HEC90_RS25385 () | 100861..101510 | + | 650 | Protein_121 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| HEC90_RS25390 () | 101637..102061 | - | 425 | Protein_122 | IS200/IS605 family transposase | - |
| HEC90_RS25395 () | 102118..102468 | + | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| HEC90_RS25400 () | 102535..103095 | - | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| HEC90_RS25405 () | 103251..103538 | + | 288 | WP_071530243.1 | hypothetical protein | - |
| HEC90_RS25410 () | 103815..104300 | - | 486 | WP_000905606.1 | membrane protein | - |
| HEC90_RS25415 () | 104294..104803 | - | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| HEC90_RS25420 () | 104807..105520 | - | 714 | Protein_128 | EAL domain-containing protein | - |
| HEC90_RS25425 () | 105529..106311 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| HEC90_RS25430 () | 106346..106867 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| HEC90_RS25435 () | 106864..107154 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| HEC90_RS25440 () | 107156..107461 | - | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | - |
| HEC90_RS25445 () | 107463..107681 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| HEC90_RS25450 () | 108357..108878 | + | 522 | WP_010999942.1 | hypothetical protein | - |
| HEC90_RS25455 () | 109362..109658 | + | 297 | WP_001687482.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|