MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 150326 bp
Accession: NZ_CP050735 Location: 1..150326 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ST90 Replicon: plasmid pST90-1
Accession: NZ_CP050735 Location: 1..150326 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ST90 Replicon: plasmid pST90-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HEC90_RS23885 () | 1..978 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| HEC90_RS23890 () | 1263..2003 | - | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| HEC90_RS23895 () | 2124..2306 | - | 183 | WP_042344623.1 | hypothetical protein | - |
| HEC90_RS23900 () | 2649..2956 | - | 308 | Protein_3 | type II toxin-antitoxin system ParD family antitoxin | - |
| HEC90_RS23905 () | 3078..4306 | + | 1229 | WP_113708090.1 | IS3-like element IS2 family transposase | - |
| HEC90_RS23910 () | 4785..5955 | + | 1171 | Protein_5 | hypothetical protein | - |
| HEC90_RS23915 () | 5988..6116 | + | 129 | Protein_6 | IS481 family transposase | - |
| HEC90_RS23920 () | 6151..6444 | - | 294 | WP_001105060.1 | hypothetical protein | - |
| HEC90_RS23925 () | 6550..6825 | - | 276 | WP_000421272.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HEC90_RS23930 () | 6825..7109 | - | 285 | WP_001387467.1 | ribbon-helix-helix protein, CopG family | Antitoxin Detail |
| HEC90_RS23935 () | 7714..8466 | + | 753 | WP_000562172.1 | IclR family transcriptional regulator | - |
| HEC90_RS23940 () | 8512..8781 | - | 270 | Protein_11 | 2-keto-3-deoxygluconate permease | - |
| HEC90_RS23945 () | 8842..9546 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HEC90_RS23950 () | 9599..9835 | - | 237 | Protein_13 | DUF3330 domain-containing protein | - |
| HEC90_RS23955 () | 10038..11051 | - | 1014 | WP_000845048.1 | class 1 integron integrase IntI1 | - |
| HEC90_RS23960 () | 11200..11991 | + | 792 | WP_032491824.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA22 | - |
| HEC90_RS23965 () | 12159..12856 | - | 698 | Protein_16 | IS1 family transposase | - |
| HEC90_RS23970 () | 13113..13385 | - | 273 | Protein_17 | IS1 family transposase | - |
| HEC90_RS23975 () | 13509..14912 | + | 1404 | WP_072135327.1 | DNA cytosine methyltransferase | - |
| HEC90_RS23980 () | 14946..16160 | - | 1215 | WP_001532073.1 | type II site-specific deoxyribonuclease | - |
| HEC90_RS23985 () | 16455..17159 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HEC90_RS23990 () | 17224..17403 | - | 180 | Protein_21 | helix-turn-helix transcriptional regulator | - |
| HEC90_RS23995 () | 17554..18456 | - | 903 | Protein_22 | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(42) | - |
| HEC90_RS24000 () | 18848..19585 | + | 738 | WP_052259184.1 | recombinase family protein | - |
| HEC90_RS24005 () | 19582..19806 | + | 225 | WP_000743213.1 | hypothetical protein | - |
| HEC90_RS24010 () | 20017..21510 | + | 1494 | WP_001120888.1 | IS91-like element ISVsa3 family transposase | - |
| HEC90_RS24020 () | 21746..21988 | - | 243 | Protein_26 | phosphoglucosamine mutase | - |
| HEC90_RS24025 () | 22075..22890 | - | 816 | WP_001043265.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | - |
| HEC90_RS24035 () | 23198..24049 | - | 852 | WP_000240536.1 | replication protein | - |
| HEC90_RS24040 () | 24036..24719 | - | 684 | Protein_29 | AAA family ATPase | - |
| HEC90_RS24045 () | 24774..25478 | - | 705 | WP_032199621.1 | IS6-like element IS26 family transposase | - |
| HEC90_RS24050 () | 25543..25917 | + | 375 | Protein_31 | recombinase family protein | - |
| HEC90_RS24055 () | 25933..28029 | + | 2097 | WP_000422420.1 | hypothetical protein | - |
| HEC90_RS24060 () | 28141..30060 | - | 1920 | WP_104774283.1 | tetracycline resistance ribosomal protection protein Tet(M) | - |
| HEC90_RS24065 () | 30076..30192 | - | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| HEC90_RS24070 () | 30437..30760 | - | 324 | Protein_35 | conjugal transfer protein | - |
| HEC90_RS24075 () | 30795..32078 | - | 1284 | Protein_36 | Tn3 family transposase | - |
| HEC90_RS24080 () | 32132..32836 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HEC90_RS24085 () | 32901..33581 | - | 681 | Protein_38 | class 1 integron integrase IntI1 | - |
| HEC90_RS24090 () | 33976..35511 | + | 1536 | WP_012372821.1 | fluoroquinolone efflux MFS transporter QepA1 | - |
| HEC90_RS24095 () | 35539..35907 | - | 369 | WP_001470701.1 | mechanosensitive ion channel | - |
| HEC90_RS24100 () | 36164..37696 | - | 1533 | WP_012372820.1 | IS91 family transposase | - |
| HEC90_RS24105 () | 37923..38273 | - | 351 | Protein_42 | chaperonin GroEL | - |
| HEC90_RS24110 () | 38336..38884 | + | 549 | WP_014342204.1 | cation:proton antiporter | - |
| HEC90_RS24115 () | 38965..39720 | - | 756 | WP_012372818.1 | 16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB1 | - |
| HEC90_RS24120 () | 39890..40750 | - | 861 | WP_000027057.1 | class A broad-spectrum beta-lactamase TEM-1 | - |
| HEC90_RS24125 () | 40933..41490 | - | 558 | WP_001235713.1 | recombinase family protein | - |
| HEC90_RS24130 () | 41760..42464 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| HEC90_RS24135 () | 42591..43268 | + | 678 | WP_001682408.1 | IS66-like element accessory protein TnpA | - |
| HEC90_RS24140 () | 43268..43615 | + | 348 | WP_000624622.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| HEC90_RS24145 () | 43635..45206 | + | 1572 | WP_000381395.1 | IS66 family transposase | - |
| HEC90_RS24150 () | 46020..46673 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| HEC90_RS24155 () | 46766..47023 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| HEC90_RS24160 () | 46956..47357 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| HEC90_RS24165 () | 47606..48021 | + | 416 | Protein_54 | IS1 family transposase | - |
| HEC90_RS24170 () | 48057..48602 | - | 546 | Protein_55 | Tn3 family transposase | - |
| HEC90_RS24175 () | 48668..49372 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HEC90_RS24180 () | 49409..50535 | - | 1127 | Protein_57 | DUF3883 domain-containing protein | - |
| HEC90_RS24185 () | 50586..50813 | - | 228 | WP_000248278.1 | hypothetical protein | - |
| HEC90_RS24190 () | 50837..51028 | + | 192 | WP_000951934.1 | hypothetical protein | - |
| HEC90_RS24195 () | 51510..52052 | - | 543 | WP_000587837.1 | AAA family ATPase | - |
| HEC90_RS24200 () | 52065..52925 | - | 861 | WP_000557454.1 | aminoglycoside N-acetyltransferase AAC(3)-IId | - |
| HEC90_RS24205 () | 53068..53211 | + | 144 | Protein_62 | IS4 family transposase | - |
| HEC90_RS24210 () | 53268..53972 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| HEC90_RS24215 () | 54186..55043 | - | 858 | WP_000130646.1 | incFII family plasmid replication initiator RepA | - |
| HEC90_RS24220 () | 55036..55110 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| HEC90_RS24225 () | 55348..55602 | - | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
| HEC90_RS24230 () | 55842..56432 | - | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
| HEC90_RS24235 () | 56470..56679 | - | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| HEC90_RS24240 () | 56725..57186 | - | 462 | WP_001233838.1 | thermonuclease family protein | - |
| HEC90_RS24245 () | 57431..57643 | - | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| HEC90_RS24250 () | 57772..58332 | - | 561 | WP_000139323.1 | fertility inhibition protein FinO | - |
| HEC90_RS24255 () | 58435..59295 | - | 861 | WP_000704523.1 | alpha/beta hydrolase | - |
| HEC90_RS24260 () | 59354..60100 | - | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| HEC90_RS24265 () | 60120..65390 | - | 5271 | WP_000948354.1 | conjugative transfer relaxase/helicase TraI | - |
| HEC90_RS24270 () | 65390..67588 | - | 2199 | WP_000009332.1 | type IV conjugative transfer system coupling protein TraD | - |
| HEC90_RS24275 () | 67639..68376 | - | 738 | WP_000199905.1 | hypothetical protein | - |
| HEC90_RS24280 () | 68579..69310 | - | 732 | WP_000782451.1 | complement resistance protein TraT | - |
| HEC90_RS24285 () | 69359..69844 | - | 486 | WP_000605870.1 | hypothetical protein | - |
| HEC90_RS24290 () | 69860..72682 | - | 2823 | WP_001007039.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HEC90_RS24295 () | 72679..74052 | - | 1374 | WP_000944331.1 | conjugal transfer protein TraH | - |
| HEC90_RS24300 () | 74039..74464 | - | 426 | WP_001444237.1 | F-type conjugal transfer protein TrbF | - |
| HEC90_RS24305 () | 74412..74759 | - | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| HEC90_RS24310 () | 74689..75234 | - | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HEC90_RS24315 () | 75221..75505 | - | 285 | WP_000624194.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HEC90_RS24320 () | 75624..75968 | - | 345 | WP_000556796.1 | conjugal transfer protein TrbA | - |
| HEC90_RS24325 () | 75982..76725 | - | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HEC90_RS24330 () | 76718..76975 | - | 258 | WP_000864353.1 | conjugal transfer protein TrbE | - |
| HEC90_RS24335 () | 77002..78852 | - | 1851 | WP_000821856.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HEC90_RS24340 () | 78849..79487 | - | 639 | WP_001080256.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HEC90_RS24345 () | 79496..79801 | - | 306 | WP_000224416.1 | hypothetical protein | - |
| HEC90_RS24350 () | 79831..80823 | - | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| HEC90_RS24355 () | 80820..81452 | - | 633 | WP_001203728.1 | type-F conjugative transfer system protein TraW | - |
| HEC90_RS24360 () | 81449..81835 | - | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| HEC90_RS24365 () | 81832..84462 | - | 2631 | WP_000069777.1 | type IV secretion system protein TraC | - |
| HEC90_RS24370 () | 84588..84935 | - | 348 | WP_000836682.1 | hypothetical protein | - |
| HEC90_RS24375 () | 84963..85181 | - | 219 | WP_000556745.1 | hypothetical protein | - |
| HEC90_RS24380 () | 85261..85734 | - | 474 | WP_000549568.1 | hypothetical protein | - |
| HEC90_RS24385 () | 85727..86140 | - | 414 | WP_000549589.1 | hypothetical protein | - |
| HEC90_RS24390 () | 86133..86354 | - | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| HEC90_RS24395 () | 86489..87004 | - | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HEC90_RS24400 () | 87001..87369 | - | 369 | WP_001315561.1 | conjugal transfer protein TrbD | - |
| HEC90_RS24405 () | 87308..87895 | - | 588 | WP_001444176.1 | conjugal transfer protein TraP | - |
| HEC90_RS24410 () | 87864..89315 | - | 1452 | WP_000146675.1 | conjugal transfer protein TraB | - |
| HEC90_RS24415 () | 89315..90043 | - | 729 | WP_001230772.1 | type-F conjugative transfer system secretin TraK | - |
| HEC90_RS24420 () | 90030..90596 | - | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| HEC90_RS24425 () | 90618..90929 | - | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| HEC90_RS24430 () | 90944..91303 | - | 360 | WP_001098992.1 | type IV conjugative transfer system pilin TraA | - |
| HEC90_RS24435 () | 91336..91563 | - | 228 | WP_000089263.1 | conjugal transfer relaxosome protein TraY | - |
| HEC90_RS24440 () | 91700..92371 | - | 672 | WP_000283561.1 | conjugal transfer transcriptional regulator TraJ | - |
| HEC90_RS24445 () | 92565..92948 | - | 384 | WP_001354030.1 | relaxosome protein TraM | - |
| HEC90_RS24450 () | 93271..93873 | + | 603 | WP_000243713.1 | transglycosylase SLT domain-containing protein | - |
| HEC90_RS24455 () | 94170..94991 | - | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| HEC90_RS24460 () | 95102..95398 | - | 297 | WP_001272251.1 | hypothetical protein | - |
| HEC90_RS25570 () | 95698..96075 | + | 378 | Protein_114 | hypothetical protein | - |
| HEC90_RS24475 () | 96313..96471 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | - |
| HEC90_RS24480 () | 96751..97470 | - | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| HEC90_RS24485 () | 97467..97901 | - | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| HEC90_RS24490 () | 97970..99993 | - | 2024 | Protein_118 | ParB/RepB/Spo0J family partition protein | - |
| HEC90_RS24495 () | 100054..100287 | - | 234 | WP_000006003.1 | DUF905 family protein | - |
| HEC90_RS24500 () | 100345..100872 | - | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| HEC90_RS24515 () | 101727..102290 | - | 564 | WP_001298559.1 | class I SAM-dependent methyltransferase | - |
| HEC90_RS24520 () | 102337..103698 | - | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| HEC90_RS24525 () | 103750..103980 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| HEC90_RS24530 () | 105018..105209 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| HEC90_RS24535 () | 105206..105628 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| HEC90_RS24540 () | 105675..106100 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| HEC90_RS24550 () | 106517..107293 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| HEC90_RS24555 () | 107344..107778 | - | 435 | WP_000274437.1 | DUF1380 family protein | - |
| HEC90_RS24560 () | 107792..108013 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| HEC90_RS24565 () | 108014..108697 | - | 684 | WP_000086185.1 | DNA methylase | - |
| HEC90_RS24570 () | 108774..109078 | - | 305 | Protein_131 | hypothetical protein | - |
| HEC90_RS24575 () | 109082..109984 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| HEC90_RS24580 () | 110851..111822 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| HEC90_RS24585 () | 111822..112988 | - | 1167 | WP_000772446.1 | plasmid-partitioning protein SopA | - |
| HEC90_RS24590 () | 113576..114331 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| HEC90_RS24595 () | 115105..115911 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| HEC90_RS24600 () | 115912..116217 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| HEC90_RS24605 () | 116219..116437 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| HEC90_RS24610 () | 117005..117517 | + | 513 | WP_000151784.1 | hypothetical protein | - |
| HEC90_RS24615 () | 117551..118684 | - | 1134 | WP_001542067.1 | DUF3800 domain-containing protein | - |
| HEC90_RS24620 () | 118796..120367 | - | 1572 | WP_000381395.1 | IS66 family transposase | - |
| HEC90_RS24625 () | 120387..120734 | - | 348 | WP_000624622.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| HEC90_RS24630 () | 120734..121411 | - | 678 | WP_001682408.1 | IS66-like element accessory protein TnpA | - |
| HEC90_RS24635 () | 121558..122331 | - | 774 | WP_000905949.1 | hypothetical protein | - |
| HEC90_RS24640 () | 122344..122844 | - | 501 | WP_000528931.1 | hypothetical protein | - |
| HEC90_RS24645 () | 123109..123339 | + | 231 | WP_001261278.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| HEC90_RS24650 () | 123336..123752 | + | 417 | WP_001034046.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HEC90_RS24655 () | 123797..127591 | - | 3795 | WP_001144732.1 | hypothetical protein | - |
| HEC90_RS24660 () | 127972..128202 | + | 231 | WP_001261286.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| HEC90_RS24665 () | 128199..128615 | + | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HEC90_RS24670 () | 128690..130255 | + | 1566 | WP_001128474.1 | AAA family ATPase | - |
| HEC90_RS24675 () | 130240..131262 | + | 1023 | WP_000361402.1 | helicase UvrD | - |
| HEC90_RS24680 () | 131516..132213 | - | 698 | Protein_153 | IS1 family transposase | - |
| HEC90_RS24685 () | 132593..134794 | - | 2202 | WP_000973519.1 | ferric aerobactin receptor IutA | - |
| HEC90_RS24690 () | 134876..136153 | - | 1278 | WP_000750130.1 | NADPH-dependent L-lysine N(6)-monooxygenase IucD | - |
| HEC90_RS24695 () | 136150..137892 | - | 1743 | WP_001015721.1 | NIS family aerobactin synthetase IucC | - |
| HEC90_RS24700 () | 137892..138839 | - | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase IucB | - |
| HEC90_RS24705 () | 138840..140564 | - | 1725 | WP_000602863.1 | NIS family aerobactin synthetase IucA | - |
| HEC90_RS24710 () | 140700..141893 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| HEC90_RS24715 () | 142273..142653 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| HEC90_RS24720 () | 142994..143407 | - | 414 | Protein_161 | phosphopyruvate hydratase | - |
| HEC90_RS24725 () | 143405..143662 | + | 258 | Protein_162 | Tn3 family transposase | - |
| HEC90_RS24730 () | 143896..144753 | - | 858 | WP_000968139.1 | iron/manganese ABC transporter permease subunit SitD | - |
| HEC90_RS24735 () | 144750..145607 | - | 858 | WP_001101723.1 | iron/manganese ABC transporter permease subunit SitC | - |
| HEC90_RS24740 () | 145604..146431 | - | 828 | WP_000983710.1 | iron/manganese ABC transporter ATP-binding protein SitB | - |
| HEC90_RS24745 () | 146431..147345 | - | 915 | WP_072644633.1 | iron/manganese ABC transporter substrate-binding protein SitA | - |
| HEC90_RS24750 () | 147701..148398 | + | 698 | Protein_167 | IS1 family transposase | - |
| HEC90_RS24755 () | 148578..149091 | - | 514 | Protein_168 | DUF4113 domain-containing protein | - |
| HEC90_RS24760 () | 149152..149256 | - | 105 | Protein_169 | AAA family ATPase | - |
| HEC90_RS24765 () | 149258..149581 | - | 324 | Protein_170 | helix-turn-helix domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|