MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 67740 bp
Accession: NZ_CP050503 Location: 1..67740 Organism: Lacticaseibacillus paracasei strain NFFJ04 Replicon: plasmid pLPCN-3
Accession: NZ_CP050503 Location: 1..67740 Organism: Lacticaseibacillus paracasei strain NFFJ04 Replicon: plasmid pLPCN-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCJ88_RS15395 () | 1234..1308 | - | 75 | Protein_1 | LtrC-like protein | - |
| HCJ88_RS15400 () | 1307..2094 | + | 788 | WP_193137640.1 | IS5 family transposase ISCaa8 | Transposase |
| HCJ88_RS15405 () | 2102..2371 | + | 270 | Protein_3 | DDE-type integrase/transposase/recombinase | - |
| HCJ88_RS15410 () | 2594..3574 | - | 981 | WP_193137641.1 | LacI family DNA-binding transcriptional regulator | - |
| HCJ88_RS15415 () | 3944..5896 | + | 1953 | WP_193137642.1 | sucrose-specific PTS transporter subunit IIBC | - |
| HCJ88_RS15420 () | 6028..6882 | + | 855 | WP_193137643.1 | ROK family protein | - |
| HCJ88_RS15425 () | 7479..7772 | + | 294 | WP_193137644.1 | hypothetical protein | - |
| HCJ88_RS15430 () | 7791..8669 | - | 879 | WP_193137645.1 | hypothetical protein | VF |
| HCJ88_RS15435 () | 9179..9751 | + | 573 | WP_193137646.1 | hypothetical protein | - |
| HCJ88_RS15440 () | 9765..10213 | + | 449 | Protein_10 | nitroreductase | - |
| HCJ88_RS15445 () | 10206..10361 | + | 156 | WP_189269875.1 | hypothetical protein | - |
| HCJ88_RS15450 () | 10358..10747 | + | 390 | WP_193137647.1 | hypothetical protein | - |
| HCJ88_RS15455 () | 10904..11023 | - | 120 | WP_193137648.1 | putative holin-like toxin | - |
| HCJ88_RS15460 () | 11391..12761 | - | 1371 | WP_193137649.1 | DUF3991 domain-containing protein | - |
| HCJ88_RS15465 () | 12806..15016 | - | 2211 | WP_193137650.1 | hypothetical protein | Relaxase |
| HCJ88_RS15470 () | 14988..15389 | - | 402 | WP_193137651.1 | hypothetical protein | Relaxase |
| HCJ88_RS15475 () | 15639..15914 | - | 276 | WP_193137652.1 | hypothetical protein | - |
| HCJ88_RS15480 () | 16004..16978 | - | 975 | WP_193137653.1 | DNA primase | - |
| HCJ88_RS15485 () | 16997..18139 | - | 1143 | WP_193137654.1 | hypothetical protein | - |
| HCJ88_RS15490 () | 18175..18405 | - | 231 | WP_193137655.1 | hypothetical protein | - |
| HCJ88_RS15495 () | 18423..18947 | - | 525 | WP_193137656.1 | hypothetical protein | - |
| HCJ88_RS15500 () | 18962..21460 | - | 2499 | WP_193137657.1 | CHAP domain-containing protein | - |
| HCJ88_RS15505 () | 21450..23906 | - | 2457 | WP_193137658.1 | ATP-binding protein | - |
| HCJ88_RS15510 () | 23854..24225 | - | 372 | WP_193137659.1 | PrgI family protein | - |
| HCJ88_RS15515 () | 24241..25074 | - | 834 | WP_193137660.1 | hypothetical protein | - |
| HCJ88_RS15520 () | 25093..25299 | - | 207 | WP_016383729.1 | hypothetical protein | - |
| HCJ88_RS15525 () | 25319..27136 | - | 1818 | WP_193137661.1 | type IV secretory system conjugative DNA transfer family protein | - |
| HCJ88_RS15530 () | 27136..27618 | - | 483 | WP_193137662.1 | PcfB family protein | - |
| HCJ88_RS15535 () | 27639..29159 | - | 1521 | WP_193137663.1 | Pesticidal crystal protein Cry22Aa | VF |
| HCJ88_RS15540 () | 29175..29447 | - | 273 | WP_085694194.1 | hypothetical protein | - |
| HCJ88_RS15545 () | 29461..29742 | - | 282 | WP_193137664.1 | hypothetical protein | - |
| HCJ88_RS15550 () | 30072..30266 | - | 195 | WP_085694197.1 | hypothetical protein | - |
| HCJ88_RS15555 () | 30770..31159 | - | 390 | WP_114650610.1 | HU family DNA-binding protein | - |
| HCJ88_RS15560 () | 31334..33580 | - | 2247 | WP_193137665.1 | LPXTG cell wall anchor domain-containing protein | - |
| HCJ88_RS15565 () | 33763..33942 | - | 180 | Protein_35 | C39 family peptidase | - |
| HCJ88_RS15570 () | 33942..34262 | - | 321 | Protein_36 | hypothetical protein | - |
| HCJ88_RS15575 () | 34545..34820 | - | 276 | WP_193137619.1 | hypothetical protein | - |
| HCJ88_RS15580 () | 34807..35037 | - | 231 | WP_049173746.1 | hypothetical protein | - |
| HCJ88_RS15585 () | 35030..35248 | - | 219 | WP_193137620.1 | hypothetical protein | - |
| HCJ88_RS15590 () | 35256..35492 | - | 237 | WP_193137621.1 | hypothetical protein | - |
| HCJ88_RS15595 () | 36016..36243 | - | 228 | WP_003596668.1 | hypothetical protein | - |
| HCJ88_RS15600 () | 36738..37475 | - | 738 | WP_050894556.1 | hypothetical protein | - |
| HCJ88_RS15605 () | 37465..38514 | - | 1050 | WP_193137622.1 | replication initiator protein A | - |
| HCJ88_RS15610 () | 38762..39550 | + | 789 | WP_193137623.1 | ParA family protein | - |
| HCJ88_RS15615 () | 39555..39788 | + | 234 | WP_016372383.1 | hypothetical protein | - |
| HCJ88_RS15620 () | 39781..40137 | - | 357 | WP_193137624.1 | hypothetical protein | - |
| HCJ88_RS15625 () | 40130..41422 | - | 1293 | WP_193137625.1 | Y-family DNA polymerase | - |
| HCJ88_RS15630 () | 41419..41802 | - | 384 | WP_193137626.1 | DNA-directed RNA polymerase subunit beta | - |
| HCJ88_RS15635 () | 42004..42327 | + | 324 | WP_182629161.1 | hypothetical protein | - |
| HCJ88_RS15640 () | 42785..43747 | + | 963 | WP_193137627.1 | ketopantoate reductase family protein | - |
| HCJ88_RS15645 () | 43854..45098 | - | 1245 | WP_193137628.1 | ISL3 family transposase IS1165 | Transposase |
| HCJ88_RS15650 () | 45340..46127 | + | 788 | WP_193137629.1 | IS5 family transposase ISCaa8 | Transposase |
| HCJ88_RS15655 () | 46533..48197 | - | 1665 | WP_063493522.1 | ATP-binding protein | - |
| HCJ88_RS15660 () | 48187..49371 | - | 1185 | WP_193137630.1 | SIR2 family protein | - |
| HCJ88_RS15665 () | 49412..52852 | - | 3441 | WP_193137631.1 | type III restriction endonuclease subunit R | - |
| HCJ88_RS15670 () | 52854..56375 | - | 3522 | WP_193137632.1 | hypothetical protein | - |
| HCJ88_RS15675 () | 57022..57942 | + | 921 | WP_193137633.1 | IS30 family transposase ISLpl1 | Transposase |
| HCJ88_RS15680 () | 58439..59095 | + | 657 | Protein_58 | hypothetical protein | - |
| HCJ88_RS15685 () | 59338..59580 | + | 243 | WP_193137634.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| HCJ88_RS15690 () | 59573..59854 | + | 282 | WP_193137635.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| HCJ88_RS15695 () | 59991..60641 | + | 651 | WP_003586220.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| HCJ88_RS15700 () | 60647..60931 | + | 285 | WP_016363781.1 | BRCT domain-containing protein | - |
| HCJ88_RS15705 () | 61612..61983 | + | 372 | WP_003563277.1 | TIGR02328 family protein | - |
| HCJ88_RS15710 () | 62096..62494 | + | 399 | WP_003563273.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| HCJ88_RS15715 () | 62968..64047 | - | 1080 | WP_193137636.1 | hypothetical protein | VF |
| HCJ88_RS15720 () | 64121..65125 | - | 1005 | WP_193137637.1 | LPXTG cell wall anchor domain-containing protein | - |
| HCJ88_RS15725 () | 65128..65853 | - | 726 | WP_193137638.1 | hypothetical protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|