MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 69836 bp
Accession: NZ_CP050502 Location: 1..69836 Organism: Lacticaseibacillus paracasei strain NFFJ04 Replicon: plasmid pLPCN-2
Accession: NZ_CP050502 Location: 1..69836 Organism: Lacticaseibacillus paracasei strain NFFJ04 Replicon: plasmid pLPCN-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCJ88_RS14995 () | 283..1092 | - | 810 | WP_003572327.1 | AAA family ATPase | - |
| HCJ88_RS15000 () | 1440..2480 | + | 1041 | WP_193137596.1 | replication initiator protein A | - |
| HCJ88_RS15005 () | 2470..3207 | + | 738 | WP_193137597.1 | hypothetical protein | - |
| HCJ88_RS15010 () | 3699..3926 | + | 228 | WP_016378735.1 | hypothetical protein | - |
| HCJ88_RS15015 () | 4449..4685 | + | 237 | WP_016370447.1 | hypothetical protein | - |
| HCJ88_RS15020 () | 4693..4911 | + | 219 | WP_016372389.1 | hypothetical protein | - |
| HCJ88_RS15025 () | 4904..5134 | + | 231 | WP_193137598.1 | hypothetical protein | - |
| HCJ88_RS15030 () | 5121..5396 | + | 276 | WP_014566855.1 | hypothetical protein | - |
| HCJ88_RS15035 () | 5615..5869 | + | 255 | WP_193137599.1 | hypothetical protein | - |
| HCJ88_RS15040 () | 5944..6132 | + | 189 | WP_003592570.1 | hypothetical protein | - |
| HCJ88_RS15045 () | 6478..7908 | - | 1431 | WP_193137600.1 | ISLre2 family transposase ISLrh4 | Transposase |
| HCJ88_RS15050 () | 8160..8438 | + | 279 | WP_010493185.1 | hypothetical protein | - |
| HCJ88_RS15055 () | 8450..8716 | + | 267 | WP_016366233.1 | hypothetical protein | - |
| HCJ88_RS15060 () | 8740..10305 | + | 1566 | WP_193137601.1 | hypothetical protein | VF |
| HCJ88_RS15065 () | 10324..10800 | + | 477 | WP_003586956.1 | PcfB family protein | - |
| HCJ88_RS15070 () | 10800..12701 | + | 1902 | WP_193137602.1 | type IV secretory system conjugative DNA transfer family protein | - |
| HCJ88_RS15075 () | 12719..12925 | + | 207 | WP_016383729.1 | hypothetical protein | - |
| HCJ88_RS15080 () | 12945..13778 | + | 834 | WP_003571732.1 | hypothetical protein | - |
| HCJ88_RS15085 () | 13796..14167 | + | 372 | WP_193137603.1 | PrgI family protein | - |
| HCJ88_RS15090 () | 14115..16571 | + | 2457 | WP_003592559.1 | ATP-binding protein | - |
| HCJ88_RS15095 () | 16561..19038 | + | 2478 | WP_193137604.1 | CHAP domain-containing protein | - |
| HCJ88_RS15100 () | 19052..19576 | + | 525 | WP_193137605.1 | hypothetical protein | - |
| HCJ88_RS15105 () | 19594..19824 | + | 231 | WP_193137606.1 | hypothetical protein | - |
| HCJ88_RS15110 () | 19860..21005 | + | 1146 | WP_193137607.1 | hypothetical protein | - |
| HCJ88_RS15115 () | 21023..21997 | + | 975 | WP_014566876.1 | DNA primase | - |
| HCJ88_RS15120 () | 22085..22360 | + | 276 | WP_123022538.1 | hypothetical protein | - |
| HCJ88_RS15125 () | 22800..23006 | + | 207 | WP_193137618.1 | hypothetical protein | Relaxase |
| HCJ88_RS15130 () | 22978..25185 | + | 2208 | WP_193137608.1 | hypothetical protein | Relaxase |
| HCJ88_RS15135 () | 25230..26621 | + | 1392 | WP_193137609.1 | DUF3991 domain-containing protein | - |
| HCJ88_RS15140 () | 26768..27509 | + | 742 | WP_193137610.1 | IS5 family transposase ISCARN82 | Transposase |
| HCJ88_RS15145 () | 27830..28819 | + | 990 | WP_193137611.1 | nucleoside hydrolase | - |
| HCJ88_RS15150 () | 28816..29364 | + | 549 | WP_193137612.1 | ECF transporter S component | - |
| HCJ88_RS15155 () | 29514..29969 | + | 456 | WP_193137613.1 | IS4 family transposase ISLre1 | Transposase |
| HCJ88_RS15160 () | 30246..31664 | - | 1419 | WP_019863889.1 | IS5 family transposase ISLrh2 | Transposase |
| HCJ88_RS15165 () | 32146..32448 | - | 303 | WP_193137614.1 | type II toxin-antitoxin system YafQ family toxin | - |
| HCJ88_RS15170 () | 32438..32716 | - | 279 | WP_003625288.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| HCJ88_RS15175 () | 32820..33407 | + | 588 | WP_193137615.1 | site-specific integrase | - |
| HCJ88_RS15180 () | 33420..33677 | + | 258 | Protein_38 | hypothetical protein | - |
| HCJ88_RS15190 () | 34541..35737 | - | 1197 | WP_193137617.1 | restriction endonuclease subunit S | - |
| HCJ88_RS15195 () | 35725..35916 | - | 192 | WP_080643421.1 | DUF5320 domain-containing protein | - |
| HCJ88_RS15200 () | 35976..36659 | + | 684 | WP_193137576.1 | IS6 family transposase ISBth20 | Transposase |
| HCJ88_RS15205 () | 36784..37713 | - | 930 | WP_012491089.1 | class I mannose-6-phosphate isomerase | - |
| HCJ88_RS15210 () | 37727..38557 | - | 831 | WP_012491090.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| HCJ88_RS15215 () | 38570..39424 | - | 855 | WP_193137577.1 | PTS sugar transporter subunit IIC | - |
| HCJ88_RS15220 () | 39453..39947 | - | 495 | WP_076653655.1 | PTS sugar transporter subunit IIB | - |
| HCJ88_RS15225 () | 39991..40410 | - | 420 | WP_012491093.1 | PTS sugar transporter subunit IIA | - |
| HCJ88_RS15230 () | 40587..41309 | + | 723 | WP_012491094.1 | deoxyribose-phosphate aldolase | - |
| HCJ88_RS15235 () | 41407..42144 | + | 738 | WP_012491095.1 | GntR family transcriptional regulator | - |
| HCJ88_RS15240 () | 42356..43039 | + | 684 | WP_002816065.1 | IS6 family transposase ISBth20 | Transposase |
| HCJ88_RS15245 () | 43103..44150 | - | 1048 | Protein_51 | type I restriction-modification system subunit M | - |
| HCJ88_RS15250 () | 44164..47193 | - | 3030 | Protein_52 | type I restriction endonuclease subunit R | - |
| HCJ88_RS15255 () | 47347..48048 | - | 702 | Protein_53 | IS1380 family transposase IS1678 | Transposase |
| HCJ88_RS15265 () | 48926..49369 | - | 444 | Protein_55 | IS1380 family transposase IS1678 | Transposase |
| HCJ88_RS15270 () | 49383..50801 | - | 1419 | WP_193137578.1 | IS5 family transposase ISLrh3 | Transposase |
| HCJ88_RS15275 () | 50937..51098 | - | 162 | Protein_57 | transposase | - |
| HCJ88_RS15280 () | 51176..51859 | + | 684 | WP_003586785.1 | IS6 family transposase ISBth20 | Transposase |
| HCJ88_RS15285 () | 51991..52275 | - | 285 | WP_193137579.1 | BRCT domain-containing protein | - |
| HCJ88_RS15290 () | 52272..52931 | - | 660 | WP_193137580.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| HCJ88_RS15295 () | 53069..53350 | - | 282 | WP_193137581.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| HCJ88_RS15300 () | 53343..53585 | - | 243 | WP_193137582.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| HCJ88_RS15305 () | 53695..54484 | - | 790 | Protein_63 | IS5 family transposase | - |
| HCJ88_RS15310 () | 54483..54841 | + | 359 | Protein_64 | hypothetical protein | - |
| HCJ88_RS15315 () | 54964..57567 | + | 2604 | WP_193137583.1 | sigma 54-interacting transcriptional regulator | - |
| HCJ88_RS15320 () | 57697..58125 | + | 429 | WP_193137584.1 | PTS mannose transporter subunit IIA | - |
| HCJ88_RS15325 () | 58138..58635 | + | 498 | WP_193137585.1 | PTS sugar transporter subunit IIB | - |
| HCJ88_RS15330 () | 58649..59458 | + | 810 | WP_193137586.1 | PTS sugar transporter subunit IIC | - |
| HCJ88_RS15335 () | 59455..60276 | + | 822 | WP_193137587.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| HCJ88_RS15340 () | 60276..62384 | + | 2109 | WP_193137588.1 | glycoside hydrolase | - |
| HCJ88_RS15345 () | 62384..63502 | + | 1119 | WP_193137589.1 | DUF2961 domain-containing protein | - |
| HCJ88_RS15350 () | 63527..64807 | + | 1281 | WP_193137590.1 | RNA polymerase factor sigma-54 | - |
| HCJ88_RS15355 () | 64816..65691 | + | 876 | WP_193137591.1 | ROK family protein | - |
| HCJ88_RS15360 () | 66049..66625 | - | 577 | Protein_74 | transposase | - |
| HCJ88_RS15365 () | 66627..66957 | - | 331 | Protein_75 | transposase | - |
| HCJ88_RS15370 () | 67255..67569 | - | 315 | WP_193137592.1 | hypothetical protein | - |
| HCJ88_RS15375 () | 67761..68144 | + | 384 | WP_193137593.1 | DNA-directed RNA polymerase subunit beta | - |
| HCJ88_RS15380 () | 68141..69433 | + | 1293 | WP_193137594.1 | Y-family DNA polymerase | - |
| HCJ88_RS15385 () | 69426..69764 | + | 339 | WP_193137595.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|