MGE detailed information
MGE type: Conjugative plasmid MGE length: 32446 bp
Accession: NZ_CP050254 Location: 1..32446 Organism: Orbus sp. IPMB12 Replicon: plasmid pIPMB12
Accession: NZ_CP050254 Location: 1..32446 Organism: Orbus sp. IPMB12 Replicon: plasmid pIPMB12
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IPMB12_RS11920 () | 1052..1240 | + | 189 | WP_166917804.1 | hypothetical protein | - |
| IPMB12_RS11925 () | 1250..1510 | + | 261 | WP_166917805.1 | hypothetical protein | - |
| IPMB12_RS11930 () | 1614..1844 | + | 231 | WP_166917806.1 | entry exclusion lipoprotein TrbK | - |
| IPMB12_RS11935 () | 1856..2539 | - | 684 | WP_166917807.1 | conjugal transfer protein TraX | - |
| IPMB12_RS11940 () | 2532..2870 | - | 339 | WP_166917808.1 | single-stranded DNA-binding protein | - |
| IPMB12_RS11945 () | 2906..3397 | - | 492 | WP_166917809.1 | hypothetical protein | VF |
| IPMB12_RS11950 () | 3399..4016 | - | 618 | WP_166917810.1 | hypothetical protein | - |
| IPMB12_RS11955 () | 4013..5320 | - | 1308 | WP_166917811.1 | P-type conjugative transfer protein TrbL | - |
| IPMB12_RS11960 () | 5320..6081 | - | 762 | WP_166917812.1 | P-type conjugative transfer protein TrbJ | - |
| IPMB12_RS11965 () | 6098..7459 | - | 1362 | WP_166917838.1 | Type IV secretion system protein virB10 | VF |
| IPMB12_RS11970 () | 7459..7923 | - | 465 | WP_166917813.1 | hypothetical protein | - |
| IPMB12_RS11975 () | 7927..8811 | - | 885 | WP_166917814.1 | P-type conjugative transfer protein TrbG | - |
| IPMB12_RS11980 () | 8822..9574 | - | 753 | WP_166917815.1 | conjugal transfer protein TrbF | - |
| IPMB12_RS11985 () | 9571..12147 | - | 2577 | WP_166917816.1 | Type IV secretion system protein virB4 | VF |
| IPMB12_RS11990 () | 12144..12455 | - | 312 | WP_166917817.1 | conjugal transfer protein TrbD | - |
| IPMB12_RS11995 () | 12465..12878 | - | 414 | WP_208293601.1 | TrbC/VirB2 family protein | - |
| IPMB12_RS12000 () | 13000..13557 | + | 558 | WP_166917818.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| IPMB12_RS12005 () | 13592..13903 | + | 312 | WP_166917819.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| IPMB12_RS12010 () | 13893..14201 | + | 309 | WP_166917820.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| IPMB12_RS12015 () | 14306..17248 | - | 2943 | WP_208293600.1 | DUF1738 domain-containing protein | - |
| IPMB12_RS12020 () | 17241..17438 | - | 198 | WP_166917822.1 | hypothetical protein | - |
| IPMB12_RS12025 () | 17464..19485 | - | 2022 | WP_166917823.1 | DNA topoisomerase 3 | - |
| IPMB12_RS12030 () | 19838..20371 | - | 534 | WP_166917824.1 | conjugative transfer signal peptidase TraF | - |
| IPMB12_RS12035 () | 20374..22266 | - | 1893 | WP_166917825.1 | Conjugal transfer protein TraG | VF |
| IPMB12_RS12040 () | 22267..24456 | - | 2190 | WP_166917826.1 | Protein TraI | Relaxase |
| IPMB12_RS12045 () | 24446..24634 | - | 189 | WP_166917827.1 | carbon storage regulator CsrA | - |
| IPMB12_RS12050 () | 24639..25118 | - | 480 | WP_166917828.1 | hypothetical protein | - |
| IPMB12_RS12055 () | 25147..25494 | - | 348 | WP_166917829.1 | conjugal transfer protein TrbJ | - |
| IPMB12_RS12060 () | 25813..26181 | + | 369 | WP_166917830.1 | TraK family protein | - |
| IPMB12_RS12065 () | 26206..26916 | + | 711 | WP_166917840.1 | conjugal transfer protein TraL | - |
| IPMB12_RS12070 () | 26913..27341 | + | 429 | WP_166917831.1 | conjugal transfer protein TraM | - |
| IPMB12_RS12075 () | 27385..27588 | - | 204 | WP_166917832.1 | hypothetical protein | - |
| IPMB12_RS12080 () | 27620..28621 | - | 1002 | WP_166917833.1 | ParB/RepB/Spo0J family partition protein | - |
| IPMB12_RS12085 () | 28632..29438 | - | 807 | WP_166917834.1 | ParA family protein | - |
| IPMB12_RS12090 () | 29453..29740 | - | 288 | WP_166917835.1 | transcriptional regulator | - |
| IPMB12_RS12095 () | 30709..31527 | - | 819 | WP_166917836.1 | replication initiator protein A | - |
| IPMB12_RS12100 () | 31772..32119 | + | 348 | WP_166917837.1 | helix-turn-helix domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|