MGE detailed information
MGE type: Prophage MGE length: 92430 bp
Accession: NZ_CP050173 Location: 3612987..3705416 Organism: Escherichia coli strain STB20-1 Replicon: chromosome
Accession: NZ_CP050173 Location: 3612987..3705416 Organism: Escherichia coli strain STB20-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIP50_RS17400 () | 3609596..3610552 | + | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| FIP50_RS17405 () | 3610603..3610941 | + | 339 | Protein_3404 | LysR family transcriptional regulator | - |
| FIP50_RS17410 () | 3611510..3612526 | + | 1017 | WP_064670530.1 | hypothetical protein | - |
| FIP50_RS17415 () | 3612987..3614219 | + | 1233 | WP_064670529.1 | hypothetical protein | - |
| FIP50_RS17420 () | 3614348..3614932 | - | 585 | WP_064670528.1 | tail fiber assembly protein | - |
| FIP50_RS17425 () | 3614932..3618282 | - | 3351 | WP_151140399.1 | prophage tail fiber N-terminal domain-containing protein | - |
| FIP50_RS17430 () | 3618347..3618550 | - | 204 | Protein_3409 | Ail/Lom family outer membrane beta-barrel protein | - |
| FIP50_RS17435 () | 3618547..3618765 | - | 219 | Protein_3410 | hypothetical protein | - |
| FIP50_RS17440 () | 3618855..3619400 | - | 546 | WP_000453558.1 | DNA-packaging protein | - |
| FIP50_RS17445 () | 3619738..3620058 | + | 321 | WP_000025003.1 | hypothetical protein | - |
| FIP50_RS17450 () | 3620439..3620882 | - | 444 | WP_085438473.1 | lysis protein | - |
| FIP50_RS17455 () | 3620879..3621211 | - | 333 | Protein_3414 | lysozyme RrrD | - |
| FIP50_RS17460 () | 3621212..3621406 | + | 195 | Protein_3415 | hypothetical protein | - |
| FIP50_RS17465 () | 3621403..3622083 | + | 681 | WP_000186784.1 | YqaJ viral recombinase family protein | - |
| FIP50_RS17470 () | 3622080..3622262 | + | 183 | WP_072126246.1 | DUF1317 domain-containing protein | - |
| FIP50_RS17475 () | 3622235..3622426 | + | 192 | WP_000548531.1 | DUF1382 family protein | - |
| FIP50_RS17480 () | 3622503..3622718 | + | 216 | WP_000188870.1 | hypothetical protein | - |
| FIP50_RS17485 () | 3622817..3623035 | + | 219 | WP_085438467.1 | TraR/DksA family transcriptional regulator | - |
| FIP50_RS17490 () | 3623083..3623361 | + | 279 | WP_000488407.1 | DUF4222 domain-containing protein | - |
| FIP50_RS17495 () | 3623560..3624723 | + | 1164 | WP_053271768.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| FIP50_RS17500 () | 3625226..3625378 | - | 153 | WP_085438561.1 | tail fiber assembly protein | - |
| FIP50_RS17505 () | 3625308..3625460 | - | 153 | Protein_3424 | transposase | - |
| FIP50_RS17510 () | 3625974..3627056 | + | 1083 | WP_085438563.1 | acyltransferase | - |
| FIP50_RS17515 () | 3627102..3627266 | - | 165 | WP_021548946.1 | hypothetical protein | - |
| FIP50_RS17520 () | 3627277..3627693 | - | 417 | WP_136710480.1 | tail assembly chaperone | - |
| FIP50_RS17530 () | 3628412..3628708 | - | 297 | Protein_3428 | hypothetical protein | - |
| FIP50_RS17535 () | 3628696..3629034 | - | 339 | WP_064670553.1 | RusA family crossover junction endodeoxyribonuclease | - |
| FIP50_RS17540 () | 3629031..3629321 | - | 291 | WP_000774473.1 | DUF1364 domain-containing protein | - |
| FIP50_RS17545 () | 3629314..3629484 | - | 171 | WP_000211034.1 | hypothetical protein | - |
| FIP50_RS17550 () | 3629484..3629939 | - | 456 | WP_064670554.1 | DNA base-flipping protein YbcN | - |
| FIP50_RS17555 () | 3629936..3630037 | - | 102 | WP_072097297.1 | hypothetical protein | - |
| FIP50_RS17560 () | 3630132..3630914 | - | 783 | WP_074400827.1 | hypothetical protein | - |
| FIP50_RS17565 () | 3631089..3631412 | - | 324 | WP_064670555.1 | hypothetical protein | - |
| FIP50_RS17570 () | 3631524..3633050 | - | 1527 | WP_000709067.1 | hypothetical protein ; Integrase | Integrase |
| FIP50_RS17575 () | 3633108..3633257 | - | 150 | WP_001301135.1 | hypothetical protein | - |
| FIP50_RS17580 () | 3633306..3633638 | - | 333 | WP_001070442.1 | SMR family multidrug efflux protein EmrE | - |
| FIP50_RS17585 () | 3633706..3634008 | - | 303 | WP_000145915.1 | protein ren | - |
| FIP50_RS17590 () | 3634005..3634706 | - | 702 | WP_000788886.1 | Replication protein P | - |
| FIP50_RS17595 () | 3634703..3635722 | - | 1020 | WP_077883990.1 | replication protein | - |
| FIP50_RS17600 () | 3635719..3636258 | - | 540 | WP_064670556.1 | toxin YdaT domain-containing protein | - |
| FIP50_RS17605 () | 3636289..3636516 | - | 228 | WP_000184665.1 | helix-turn-helix domain-containing protein | - |
| FIP50_RS17610 () | 3636627..3637319 | + | 693 | WP_001295669.1 | helix-turn-helix transcriptional regulator | - |
| FIP50_RS17615 () | 3637400..3638461 | + | 1062 | WP_000380252.1 | hypothetical protein | - |
| FIP50_RS17620 () | 3638439..3638816 | + | 378 | WP_000866321.1 | ASCH domain-containing protein | - |
| FIP50_RS17625 () | 3639292..3639498 | + | 207 | WP_000233576.1 | phage encoded cell division inhibitor protein | - |
| FIP50_RS17630 () | 3639574..3639870 | + | 297 | WP_033561765.1 | host-nuclease inhibitor protein Gam | - |
| FIP50_RS17635 () | 3639876..3640466 | + | 591 | Protein_3449 | hypothetical protein ; Integrase | Integrase |
| FIP50_RS23290 () | 3640464..3640703 | + | 240 | Protein_3450 | hypothetical protein ; Integrase | Integrase |
| FIP50_RS17640 () | 3640754..3641451 | + | 698 | Protein_3451 | IS1 family transposase IS1X2 | Transposase |
| FIP50_RS17645 () | 3641481..3642275 | - | 795 | WP_024220864.1 | P-type conjugative transfer protein TrbJ | - |
| FIP50_RS17650 () | 3642357..3642710 | - | 354 | WP_000218773.1 | conjugal transfer transcriptional regulator TraJ | - |
| FIP50_RS17655 () | 3642994..3643275 | - | 282 | WP_029380176.1 | hypothetical protein | - |
| FIP50_RS17660 () | 3644226..3644483 | + | 258 | WP_071840188.1 | HigA family addiction module antidote protein | - |
| FIP50_RS17665 () | 3644538..3646283 | - | 1746 | WP_000470135.1 | DUF2326 domain-containing protein | - |
| FIP50_RS17670 () | 3646252..3646500 | - | 249 | WP_000926290.1 | hypothetical protein | - |
| FIP50_RS17675 () | 3646472..3647452 | - | 981 | WP_001082070.1 | SMEK domain-containing protein | - |
| FIP50_RS17680 () | 3648145..3649284 | + | 1140 | WP_000784327.1 | hypothetical protein | - |
| FIP50_RS17685 () | 3649838..3651052 | + | 1215 | WP_072161528.1 | type II restriction endonuclease | - |
| FIP50_RS17690 () | 3651087..3652490 | - | 1404 | WP_175267657.1 | DNA cytosine methyltransferase | - |
| FIP50_RS17695 () | 3652924..3653697 | + | 774 | WP_000355484.1 | hypothetical protein | - |
| FIP50_RS17700 () | 3653758..3654312 | - | 555 | WP_151140400.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| FIP50_RS17705 () | 3654342..3654751 | + | 410 | Protein_3464 | phage tail protein | - |
| FIP50_RS17710 () | 3654772..3655215 | + | 444 | WP_001008234.1 | tail fiber assembly protein | - |
| FIP50_RS17715 () | 3655187..3655789 | - | 603 | WP_151140401.1 | tail fiber assembly protein | - |
| FIP50_RS17720 () | 3655789..3656511 | - | 723 | WP_151140402.1 | phage tail protein | - |
| FIP50_RS17725 () | 3656515..3657099 | - | 585 | WP_063073499.1 | YmfQ family protein | - |
| FIP50_RS17730 () | 3657090..3658148 | - | 1059 | WP_028125900.1 | baseplate J/gp47 family protein | - |
| FIP50_RS17735 () | 3658135..3658560 | - | 426 | WP_000424744.1 | phage GP46 family protein | - |
| FIP50_RS17740 () | 3658560..3659108 | - | 549 | WP_052921837.1 | phage baseplate assembly protein V | - |
| FIP50_RS17745 () | 3659108..3660187 | - | 1080 | WP_063073500.1 | baseplate protein | - |
| FIP50_RS17750 () | 3660184..3661512 | - | 1329 | WP_063073501.1 | DNA circularization N-terminal domain-containing protein | - |
| FIP50_RS17755 () | 3661566..3662243 | - | 678 | WP_040072272.1 | hypothetical protein | - |
| FIP50_RS17760 () | 3662325..3664106 | - | 1782 | WP_063073503.1 | phage tail tape measure protein | - |
| FIP50_RS17765 () | 3664099..3664281 | - | 183 | WP_001314907.1 | hypothetical protein | - |
| FIP50_RS17770 () | 3664248..3664517 | - | 270 | WP_000661054.1 | phage tail assembly protein | - |
| FIP50_RS17775 () | 3664517..3664873 | - | 357 | WP_000090998.1 | phage tail tube protein | - |
| FIP50_RS17780 () | 3664873..3666369 | - | 1497 | WP_151140403.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| FIP50_RS17785 () | 3666353..3666523 | - | 171 | WP_063073505.1 | DUF2635 domain-containing protein | - |
| FIP50_RS17790 () | 3666532..3667092 | - | 561 | WP_000779292.1 | hypothetical protein | - |
| FIP50_RS17795 () | 3667089..3667595 | - | 507 | WP_000224836.1 | hypothetical protein | - |
| FIP50_RS17800 () | 3667570..3667980 | - | 411 | WP_000702401.1 | phage head closure protein | - |
| FIP50_RS17805 () | 3667977..3668300 | - | 324 | WP_000927711.1 | head-tail connector protein | - |
| FIP50_RS17810 () | 3668303..3668503 | - | 201 | WP_000601360.1 | hypothetical protein | - |
| FIP50_RS17815 () | 3668553..3669758 | - | 1206 | WP_063073507.1 | phage major capsid protein | - |
| FIP50_RS17820 () | 3669773..3670423 | - | 651 | WP_001193640.1 | HK97 family phage prohead protease | - |
| FIP50_RS17825 () | 3670401..3671642 | - | 1242 | WP_000466255.1 | phage portal protein | - |
| FIP50_RS17830 () | 3671642..3671824 | - | 183 | WP_000605605.1 | hypothetical protein | - |
| FIP50_RS17835 () | 3671836..3673332 | - | 1497 | WP_072011717.1 | terminase large subunit | - |
| FIP50_RS17840 () | 3673571..3674056 | - | 486 | WP_063073508.1 | phage terminase small subunit P27 family | - |
| FIP50_RS17845 () | 3674182..3674532 | - | 351 | WP_001135220.1 | HNH endonuclease | - |
| FIP50_RS17850 () | 3675057..3675350 | + | 294 | WP_000738423.1 | increased serum survival lipoprotein Iss | - |
| FIP50_RS17855 () | 3675441..3675623 | - | 183 | WP_123010240.1 | prophage lysis lipoprotein RzoD | - |
| FIP50_RS17860 () | 3675840..3676316 | - | 477 | WP_001197766.1 | glycoside hydrolase family protein | - |
| FIP50_RS17865 () | 3676320..3676646 | - | 327 | WP_001120496.1 | phage holin, lambda family | - |
| FIP50_RS17870 () | 3676965..3678062 | + | 1098 | WP_001532221.1 | hypothetical protein | - |
| FIP50_RS17875 () | 3678073..3678495 | + | 423 | WP_021552536.1 | hypothetical protein | - |
| FIP50_RS17880 () | 3678488..3679123 | + | 636 | WP_063073510.1 | hypothetical protein | - |
| FIP50_RS17885 () | 3679099..3679488 | - | 390 | WP_195686759.1 | antitermination protein Q | - |
| FIP50_RS17890 () | 3679504..3680493 | - | 990 | WP_021552534.1 | DUF968 domain-containing protein | - |
| FIP50_RS17895 () | 3680501..3681310 | - | 810 | WP_001061445.1 | KilA-N domain-containing protein | - |
| FIP50_RS17900 () | 3681330..3681719 | - | 390 | WP_000767103.1 | RusA family crossover junction endodeoxyribonuclease | - |
| FIP50_RS17905 () | 3681716..3682042 | - | 327 | WP_061356387.1 | LexA family transcriptional regulator | - |
| FIP50_RS17910 () | 3682042..3682536 | - | 495 | WP_074149693.1 | PerC family transcriptional regulator | - |
| FIP50_RS17915 () | 3682533..3683474 | - | 942 | WP_061356389.1 | helix-turn-helix domain-containing protein | - |
| FIP50_RS17920 () | 3683464..3683643 | - | 180 | WP_001250269.1 | DUF4222 domain-containing protein | - |
| FIP50_RS17925 () | 3683819..3684376 | - | 558 | WP_063073513.1 | protein YmfL | - |
| FIP50_RS17930 () | 3684420..3684620 | - | 201 | WP_000649477.1 | helix-turn-helix domain-containing protein | - |
| FIP50_RS17935 () | 3684711..3685385 | + | 675 | WP_000848748.1 | LexA family transcriptional repressor | - |
| FIP50_RS17940 () | 3685620..3685826 | + | 207 | WP_000549626.1 | hypothetical protein | - |
| FIP50_RS17945 () | 3685798..3686232 | - | 435 | WP_000016389.1 | hypothetical protein | - |
| FIP50_RS17950 () | 3686777..3687313 | + | 537 | WP_000008236.1 | 5'-deoxynucleotidase | - |
| FIP50_RS17955 () | 3687304..3687666 | + | 363 | WP_001242749.1 | phage protein | - |
| FIP50_RS17960 () | 3687666..3687971 | + | 306 | WP_000206732.1 | hypothetical protein | - |
| FIP50_RS17965 () | 3688198..3689361 | + | 1164 | WP_000051887.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| FIP50_RS17975 () | 3689566..3690819 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| FIP50_RS17980 () | 3690831..3691934 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| FIP50_RS17985 () | 3692222..3693277 | + | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| FIP50_RS17990 () | 3693316..3693717 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| FIP50_RS17995 () | 3693775..3695019 | - | 1245 | WP_000189541.1 | esterase FrsA | - |
| - () | 3694435..3694515 | - | 81 | NuclAT_11 | - | - |
| - () | 3694435..3694515 | - | 81 | NuclAT_11 | - | - |
| - () | 3694435..3694515 | - | 81 | NuclAT_11 | - | - |
| - () | 3694435..3694515 | - | 81 | NuclAT_11 | - | - |
| FIP50_RS18000 () | 3695111..3695569 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| FIP50_RS18005 () | 3695830..3697287 | + | 1458 | WP_001293003.1 | cytosol nonspecific dipeptidase | - |
| FIP50_RS18010 () | 3697344..3697865 | - | 522 | Protein_3524 | peptide chain release factor H | - |
| FIP50_RS18015 () | 3697864..3698067 | - | 204 | Protein_3525 | RNA ligase RtcB family protein | - |
| FIP50_RS18020 () | 3698313..3698765 | - | 453 | WP_001059847.1 | GNAT family N-acetyltransferase | - |
| FIP50_RS18025 () | 3698839..3699536 | + | 698 | Protein_3527 | IS1 family transposase | - |
| FIP50_RS18030 () | 3699552..3699950 | - | 399 | WP_001263493.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| FIP50_RS18035 () | 3699953..3700246 | - | 294 | WP_000554757.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| FIP50_RS18040 () | 3700298..3701353 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| FIP50_RS18045 () | 3701424..3702209 | - | 786 | WP_000207587.1 | Chemotaxis protein LafU | VF |
| FIP50_RS18050 () | 3702181..3703893 | + | 1713 | Protein_3532 | Flagellar biosynthesis protein FlhA | VF |
| FIP50_RS18055 () | 3704117..3704614 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| FIP50_RS18060 () | 3704790..3705539 | - | 750 | WP_024192679.1 | Murein DD-endopeptidase MepH | VF |
| FIP50_RS18065 () | 3705749..3706009 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | - |
| FIP50_RS18070 () | 3706012..3706290 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | - |
| FIP50_RS18075 () | 3706446..3707186 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| FIP50_RS18080 () | 3707157..3707924 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| FIP50_RS18085 () | 3708130..3708708 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|