MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 43909 bp
Accession: NZ_CP050137 Location: 442791..486699 Organism: Sphingomonas sp. CL5.1 Replicon: chromosome
Accession: NZ_CP050137 Location: 442791..486699 Organism: Sphingomonas sp. CL5.1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F9288_RS02050 () | 438089..438808 | - | 720 | WP_174835039.1 | tetratricopeptide repeat protein | - |
| F9288_RS02055 () | 438876..439733 | - | 858 | WP_174835040.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| F9288_RS02060 () | 439780..440205 | - | 426 | WP_174838771.1 | hypothetical protein | - |
| F9288_RS02065 () | 440280..440621 | - | 342 | WP_174835041.1 | ArsC family reductase | - |
| F9288_RS02070 () | 440628..441035 | - | 408 | WP_174835042.1 | GNAT family acetyltransferase | - |
| F9288_RS02075 () | 441049..441858 | - | 810 | WP_174835043.1 | phosphatase PAP2 family protein | - |
| F9288_RS02080 () | 442068..442879 | - | 812 | Protein_411 | subclass B3 metallo-beta-lactamase | - |
| F9288_RS02085 () | 443172..443702 | - | 531 | WP_174835044.1 | GNAT family N-acetyltransferase | Toxin Detail |
| F9288_RS02090 () | 443690..444031 | - | 342 | WP_174838773.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| F9288_RS02095 () | 444483..446777 | + | 2295 | WP_174835045.1 | AAA family ATPase | - |
| F9288_RS02100 () | 446896..448158 | + | 1263 | WP_174835046.1 | site-specific DNA-methyltransferase | - |
| F9288_RS02105 () | 448103..449335 | - | 1233 | WP_174835047.1 | hypothetical protein | - |
| F9288_RS02110 () | 449335..451134 | - | 1800 | WP_174835048.1 | AAA family ATPase | - |
| F9288_RS02115 () | 451551..452081 | + | 531 | WP_174835049.1 | antirestriction protein ArdA | - |
| F9288_RS02120 () | 452544..453065 | + | 522 | WP_171379745.1 | DUF2285 domain-containing protein | - |
| F9288_RS02125 () | 453333..453866 | + | 534 | WP_171379746.1 | GNAT family N-acetyltransferase | - |
| F9288_RS02130 () | 453994..454281 | - | 288 | WP_100650301.1 | DUF2285 domain-containing protein | - |
| F9288_RS02135 () | 454741..455010 | + | 270 | WP_023516906.1 | helix-turn-helix domain-containing protein | - |
| F9288_RS02140 () | 455011..456087 | + | 1077 | WP_174835050.1 | replication initiator protein A | - |
| F9288_RS02145 () | 456149..456667 | + | 519 | WP_174835051.1 | DUF2840 domain-containing protein | - |
| F9288_RS02150 () | 456664..457209 | + | 546 | WP_174835052.1 | S26 family signal peptidase | - |
| F9288_RS02155 () | 457245..457580 | + | 336 | WP_174835053.1 | DUF736 domain-containing protein | - |
| F9288_RS02160 () | 457577..458506 | + | 930 | WP_174835054.1 | lytic transglycosylase domain-containing protein | - |
| F9288_RS02165 () | 458503..458823 | + | 321 | WP_174835055.1 | hypothetical protein | - |
| F9288_RS02170 () | 458820..460874 | + | 2055 | WP_174835056.1 | DUF3363 domain-containing protein | - |
| F9288_RS02175 () | 460891..461496 | - | 606 | WP_174835057.1 | GNAT family N-acetyltransferase | - |
| F9288_RS02180 () | 461650..462342 | + | 693 | WP_174835058.1 | TetR/AcrR family transcriptional regulator | - |
| F9288_RS02185 () | 462401..463320 | + | 920 | Protein_432 | LysR family transcriptional regulator | - |
| F9288_RS02190 () | 463331..463435 | + | 105 | Protein_433 | DUF3363 domain-containing protein | - |
| F9288_RS02195 () | 463654..464868 | + | 1215 | WP_174835059.1 | Inner membrane transport protein YdhC | ARG |
| F9288_RS02200 () | 464897..465121 | + | 225 | WP_174834727.1 | LysR family transcriptional regulator | - |
| F9288_RS02205 () | 465335..465439 | + | 105 | Protein_436 | DUF3363 domain-containing protein | - |
| F9288_RS02210 () | 465436..466062 | - | 627 | WP_174835060.1 | tetracycline resistance transcriptional repressor TetR | - |
| F9288_RS02215 () | 466167..467342 | + | 1176 | WP_174835061.1 | Tetracycline resistance protein, class C | ARG |
| F9288_RS02220 () | 467363..468349 | + | 987 | WP_174835062.1 | Hca operon transcriptional activator HcaR | VF |
| F9288_RS02225 () | 468328..468535 | + | 208 | Protein_440 | DUF3363 domain-containing protein | - |
| F9288_RS02230 () | 468614..469876 | - | 1263 | WP_174835063.1 | beta-ketoacyl-ACP synthase II | - |
| F9288_RS02235 () | 469881..470390 | - | 510 | WP_174835064.1 | helix-turn-helix transcriptional regulator | - |
| F9288_RS02240 () | 470657..472645 | + | 1989 | WP_174835065.1 | Conjugal transfer protein TraG | VF |
| F9288_RS02245 () | 472656..473135 | + | 480 | WP_174835066.1 | CopG family transcriptional regulator | - |
| F9288_RS02250 () | 473281..474264 | + | 984 | WP_174835067.1 | Type IV secretion system protein VirB11 | VF |
| F9288_RS02255 () | 474261..474593 | + | 333 | WP_021696279.1 | TrbC/VirB2 family protein | - |
| F9288_RS02260 () | 474593..474874 | + | 282 | WP_174835068.1 | VirB3 family type IV secretion system protein | - |
| F9288_RS02265 () | 474885..477377 | + | 2493 | WP_174835069.1 | conjugal transfer protein TrbE | - |
| F9288_RS02270 () | 477374..478147 | + | 774 | WP_174835070.1 | P-type conjugative transfer protein TrbJ | - |
| F9288_RS02275 () | 478162..478449 | + | 288 | WP_174835071.1 | putative entry exclusion protein TrbK-alt | - |
| F9288_RS02280 () | 478452..479813 | + | 1362 | WP_174835072.1 | hypothetical protein | VF |
| F9288_RS02285 () | 479810..480499 | + | 690 | WP_174835073.1 | conjugal transfer protein TrbF | - |
| F9288_RS02290 () | 480505..480882 | - | 378 | WP_174835074.1 | nuclear transport factor 2 family protein | - |
| F9288_RS02295 () | 480907..481899 | + | 993 | WP_174838775.1 | P-type conjugative transfer protein TrbG | - |
| F9288_RS02300 () | 481896..483032 | + | 1137 | WP_174835075.1 | Type IV secretion system protein virB10 | VF |
| F9288_RS02305 () | 483035..483256 | + | 222 | WP_174835076.1 | DUF2274 domain-containing protein | - |
| F9288_RS02310 () | 483403..483675 | + | 273 | WP_174838777.1 | AlpA family phage regulatory protein | - |
| F9288_RS02315 () | 483665..484921 | - | 1257 | WP_174835077.1 | Prophage integrase IntA ; Integrase | Integrase |
| F9288_RS02320 () | 485241..486794 | - | 1554 | WP_174835078.1 | glutamine-hydrolyzing GMP synthase | - |
| F9288_RS02325 () | 486957..487379 | - | 423 | WP_174835079.1 | 50S ribosomal protein L17 | - |
| F9288_RS02330 () | 487604..488665 | - | 1062 | WP_174835080.1 | DNA-directed RNA polymerase subunit alpha | - |
| F9288_RS02335 () | 488757..489146 | - | 390 | WP_066486290.1 | 30S ribosomal protein S11 | - |
| F9288_RS02340 () | 489252..489620 | - | 369 | WP_174835081.1 | 30S ribosomal protein S13 | - |
| F9288_RS02345 () | 490298..490438 | - | 141 | WP_174835082.1 | hypothetical protein | - |
| F9288_RS02350 () | 490554..491201 | - | 648 | WP_174835083.1 | adenylate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|