MGE detailed information
MGE type: Prophage MGE length: 85380 bp
Accession: NZ_CP049979 Location: 3646874..3732253 Organism: Escherichia coli strain IBS28 Replicon: chromosome
Accession: NZ_CP049979 Location: 3646874..3732253 Organism: Escherichia coli strain IBS28 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HAP53_RS17400 () | 3642293..3643651 | - | 1359 | WP_000826805.1 | two-component system sensor histidine kinase HprS | - |
| HAP53_RS17405 () | 3643651..3644322 | - | 672 | WP_001339045.1 | response regulator transcription factor HprR | - |
| HAP53_RS17410 () | 3644455..3644868 | + | 414 | WP_000920132.1 | hydroxyisourate hydrolase | - |
| HAP53_RS17415 () | 3644977..3645981 | + | 1005 | WP_000740094.1 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| HAP53_RS17420 () | 3645982..3646617 | + | 636 | WP_001241500.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| HAP53_RS17425 () | 3646874..3647524 | + | 651 | WP_001007805.1 | metal-binding protein ZinT | - |
| HAP53_RS17430 () | 3647867..3648397 | + | 531 | WP_001079074.1 | cytochrome b | - |
| HAP53_RS17435 () | 3649237..3649569 | + | 333 | Protein_3393 | YkgJ family cysteine cluster protein | - |
| HAP53_RS17440 () | 3649860..3650333 | - | 474 | WP_024175323.1 | hypothetical protein | - |
| HAP53_RS17445 () | 3650421..3651692 | - | 1272 | WP_001034588.1 | C4-dicarboxylate-binding periplasmic protein DctP | VF |
| HAP53_RS17450 () | 3652184..3652849 | - | 666 | WP_000548105.1 | DUF4376 domain-containing protein | - |
| HAP53_RS17455 () | 3652849..3653073 | - | 225 | WP_001367204.1 | hypothetical protein | - |
| HAP53_RS17460 () | 3653083..3654483 | - | 1401 | WP_033885107.1 | ISNCY family transposase KIS | Transposase |
| HAP53_RS17465 () | 3654627..3654767 | - | 141 | WP_044191898.1 | Hok/Gef family protein | - |
| HAP53_RS17470 () | 3654966..3658433 | - | 3468 | WP_165895615.1 | host specificity protein J | - |
| HAP53_RS17475 () | 3658674..3659306 | - | 633 | WP_165895630.1 | tail assembly protein | - |
| HAP53_RS17480 () | 3659252..3659995 | - | 744 | WP_155955609.1 | C40 family peptidase | - |
| HAP53_RS17485 () | 3660006..3660704 | - | 699 | WP_155955611.1 | phage minor tail protein L | - |
| HAP53_RS17490 () | 3660704..3661033 | - | 330 | WP_155955613.1 | phage tail protein | - |
| HAP53_RS17495 () | 3661030..3663591 | - | 2562 | WP_155955615.1 | phage tail tape measure protein | - |
| HAP53_RS17500 () | 3663572..3663985 | - | 414 | WP_071997252.1 | phage tail assembly protein T | - |
| HAP53_RS17505 () | 3664012..3664443 | - | 432 | WP_033806765.1 | phage minor tail protein G | - |
| HAP53_RS17510 () | 3664462..3665208 | - | 747 | WP_016236258.1 | phage tail protein | - |
| HAP53_RS17515 () | 3665216..3665611 | - | 396 | WP_000683079.1 | phage minor tail U family protein | - |
| HAP53_RS17520 () | 3665608..3666183 | - | 576 | WP_044721869.1 | phage tail protein | - |
| HAP53_RS17525 () | 3666199..3666552 | - | 354 | WP_001204533.1 | tail attachment protein | - |
| HAP53_RS17530 () | 3666545..3666928 | - | 384 | WP_028985947.1 | DNA-packaging protein FI | - |
| HAP53_RS17535 () | 3666980..3668008 | - | 1029 | WP_000522632.1 | major capsid protein | - |
| HAP53_RS17540 () | 3668066..3668413 | - | 348 | WP_021574150.1 | head decoration protein | - |
| HAP53_RS17545 () | 3668450..3669955 | - | 1506 | WP_063106866.1 | S49 family peptidase | - |
| HAP53_RS17550 () | 3669945..3671537 | - | 1593 | WP_044860857.1 | phage portal protein | - |
| HAP53_RS17555 () | 3671534..3671740 | - | 207 | WP_000259002.1 | head-tail joining protein | - |
| HAP53_RS17560 () | 3671724..3673652 | - | 1929 | WP_063087425.1 | phage terminase large subunit family protein | - |
| HAP53_RS17565 () | 3673624..3674130 | - | 507 | WP_001405844.1 | terminase small subunit | - |
| HAP53_RS17570 () | 3674619..3674843 | - | 225 | WP_000736383.1 | hypothetical protein | - |
| HAP53_RS23630 () | 3674840..3674932 | - | 93 | WP_033557025.1 | endopeptidase | - |
| HAP53_RS17575 () | 3674929..3675114 | - | 186 | WP_071830239.1 | Rz1 family lipoprotein | - |
| HAP53_RS17585 () | 3675352..3676120 | - | 769 | Protein_3423 | DNA adenine methylase | - |
| HAP53_RS17590 () | 3676241..3676390 | - | 150 | WP_032151794.1 | hypothetical protein | - |
| HAP53_RS17595 () | 3676390..3676956 | - | 567 | WP_062874540.1 | antirepressor | - |
| HAP53_RS17600 () | 3677230..3677763 | - | 534 | WP_033806596.1 | lysozyme | - |
| HAP53_RS17605 () | 3677800..3678357 | - | 558 | WP_062876850.1 | hypothetical protein | - |
| HAP53_RS17610 () | 3678361..3678576 | - | 216 | WP_000284506.1 | class II holin family protein | - |
| HAP53_RS17615 () | 3678653..3678898 | - | 246 | WP_001385760.1 | DUF826 domain-containing protein | - |
| HAP53_RS17620 () | 3678939..3679118 | - | 180 | WP_033815707.1 | DUF1378 family protein | - |
| HAP53_RS17625 () | 3679269..3681236 | - | 1968 | WP_155955617.1 | SASA family carbohydrate esterase | - |
| HAP53_RS17630 () | 3681497..3681832 | + | 336 | WP_021574136.1 | anti-adapter protein IraM | - |
| HAP53_RS17635 () | 3682134..3682298 | - | 165 | WP_000216624.1 | DUF3927 family protein | - |
| HAP53_RS17640 () | 3682295..3682726 | - | 432 | WP_001380362.1 | tellurite resistance protein | - |
| HAP53_RS17660 () | 3683188..3684246 | - | 1059 | WP_155955619.1 | site-specific DNA-methyltransferase | - |
| HAP53_RS17665 () | 3684397..3684594 | - | 198 | WP_044809006.1 | hypothetical protein | - |
| HAP53_RS17670 () | 3684820..3685641 | - | 822 | WP_000762902.1 | antitermination protein | - |
| HAP53_RS17675 () | 3685638..3686012 | - | 375 | WP_000334846.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HAP53_RS17680 () | 3686026..3687075 | - | 1050 | WP_024210716.1 | DUF968 domain-containing protein | - |
| HAP53_RS17685 () | 3687077..3687355 | - | 279 | WP_001379655.1 | hypothetical protein | - |
| HAP53_RS17690 () | 3687491..3687748 | + | 258 | WP_001260977.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| HAP53_RS17695 () | 3687754..3688053 | + | 300 | WP_000220600.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HAP53_RS17700 () | 3688256..3688771 | - | 516 | WP_033814887.1 | hypothetical protein | - |
| HAP53_RS17705 () | 3688768..3688944 | - | 177 | WP_000753060.1 | hypothetical protein | - |
| HAP53_RS17710 () | 3688937..3689119 | - | 183 | WP_001224672.1 | hypothetical protein | - |
| HAP53_RS17715 () | 3689267..3689572 | - | 306 | WP_044808070.1 | DUF4406 domain-containing protein | - |
| HAP53_RS17720 () | 3689569..3689850 | - | 282 | WP_062877284.1 | hypothetical protein | - |
| HAP53_RS17725 () | 3689847..3690644 | - | 798 | WP_062877281.1 | DUF1627 domain-containing protein | - |
| HAP53_RS17730 () | 3690678..3691220 | - | 543 | WP_158003628.1 | replication protein | - |
| HAP53_RS17735 () | 3691132..3692169 | - | 1038 | WP_062876881.1 | hypothetical protein | - |
| HAP53_RS17740 () | 3692238..3692663 | - | 426 | WP_000693925.1 | Rha family transcriptional regulator | - |
| HAP53_RS17745 () | 3692647..3692922 | - | 276 | WP_042969575.1 | helix-turn-helix domain-containing protein | - |
| HAP53_RS17750 () | 3693030..3693530 | + | 501 | WP_000824162.1 | helix-turn-helix transcriptional regulator | - |
| HAP53_RS17755 () | 3693548..3693739 | + | 192 | WP_000100895.1 | hypothetical protein | Antitoxin Detail |
| HAP53_RS17760 () | 3693739..3694029 | + | 291 | WP_014966210.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HAP53_RS17765 () | 3694297..3694449 | + | 153 | WP_062863539.1 | DUF1391 family protein | - |
| HAP53_RS17770 () | 3694461..3694862 | + | 402 | WP_062863541.1 | hypothetical protein | - |
| HAP53_RS17780 () | 3695664..3695852 | + | 189 | WP_000449173.1 | cell division inhibitor | - |
| HAP53_RS17785 () | 3695849..3696037 | + | 189 | WP_033885206.1 | DUF1482 family protein | - |
| HAP53_RS17790 () | 3696130..3698574 | + | 2445 | WP_155955711.1 | exonuclease | - |
| HAP53_RS17795 () | 3698633..3698836 | + | 204 | WP_000096347.1 | DUF4224 domain-containing protein | - |
| HAP53_RS17800 () | 3698836..3699861 | + | 1026 | WP_000533611.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HAP53_RS17810 () | 3700097..3700894 | + | 798 | WP_001373148.1 | DgsA anti-repressor MtfA | - |
| HAP53_RS17820 () | 3701382..3709363 | + | 7982 | Protein_3464 | Ig-like domain-containing protein | - |
| HAP53_RS17825 () | 3709625..3710677 | - | 1053 | WP_000480513.1 | glycosyltransferase family 9 protein | - |
| HAP53_RS17830 () | 3710992..3712308 | + | 1317 | WP_000378595.1 | shikimate transporter | - |
| HAP53_RS17835 () | 3712410..3713864 | + | 1455 | WP_001060247.1 | AMP nucleosidase | - |
| HAP53_RS17840 () | 3714207..3714923 | + | 717 | WP_000532912.1 | transcriptional regulatory protein YeeN | VF |
| HAP53_RS17850 () | 3715552..3716418 | - | 867 | Protein_3469 | toxic metabolite efflux MATE transporter YeeO | - |
| HAP53_RS17855 () | 3716475..3717172 | + | 698 | Protein_3470 | IS1 family transposase | - |
| HAP53_RS17860 () | 3717181..3717972 | - | 792 | Protein_3471 | FMN/FAD transporter | - |
| HAP53_RS17870 () | 3718090..3719040 | - | 951 | WP_001011020.1 | HTH-type transcriptional regulator Cbl | - |
| HAP53_RS17875 () | 3719142..3720059 | - | 918 | WP_001011483.1 | nitrogen assimilation transcriptional regulator NAC | - |
| HAP53_RS17885 () | 3720518..3721453 | - | 936 | WP_000986347.1 | L,D-transpeptidase | - |
| HAP53_RS17890 () | 3721515..3722594 | - | 1080 | WP_001166155.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| HAP53_RS17895 () | 3722606..3723349 | - | 744 | WP_001326708.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| HAP53_RS17900 () | 3723346..3723891 | - | 546 | WP_000973198.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| HAP53_RS17905 () | 3724944..3725192 | + | 249 | Protein_3478 | IS3 family transposase ISEhe3 | Transposase |
| HAP53_RS17910 () | 3725257..3726408 | + | 1152 | WP_001373172.1 | IS30 family transposase IS30D | Transposase |
| HAP53_RS17915 () | 3726415..3726624 | - | 210 | Protein_3480 | IS3 family transposase ISSfl10 | Transposase |
| HAP53_RS17920 () | 3726688..3727350 | - | 663 | Protein_3481 | ISL3 family transposase | - |
| HAP53_RS17925 () | 3727641..3728045 | - | 405 | WP_001221631.1 | zinc-ribbon domain-containing protein | - |
| HAP53_RS17930 () | 3728231..3729199 | + | 969 | Protein_3483 | IS110 family transposase | - |
| HAP53_RS17935 () | 3729209..3729601 | - | 393 | WP_000271005.1 | hypothetical protein | - |
| HAP53_RS17940 () | 3729767..3730336 | - | 570 | WP_000221556.1 | inovirus Gp2 family protein | - |
| HAP53_RS17945 () | 3731148..3731297 | - | 150 | WP_071527034.1 | hemolysin activation protein | - |
| HAP53_RS17950 () | 3732047..3732253 | + | 207 | WP_000632607.1 | AlpA family transcriptional regulator | - |
| HAP53_RS17955 () | 3732340..3732942 | + | 603 | WP_000804452.1 | hypothetical protein | - |
| HAP53_RS17960 () | 3733260..3734744 | - | 1485 | WP_001368210.1 | DUF3987 domain-containing protein | - |
| HAP53_RS17965 () | 3735974..3736846 | + | 873 | WP_001069683.1 | GTPase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|