MGE detailed information
MGE type: Prophage MGE length: 59989 bp
Accession: NZ_CP049606 Location: 1953594..2013582 Organism: Shigella boydii strain 600080 Replicon: chromosome
Accession: NZ_CP049606 Location: 1953594..2013582 Organism: Shigella boydii strain 600080 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G5S61_RS09750 () | 1949498..1950136 | - | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| G5S61_RS09755 () | 1950154..1950735 | - | 582 | Protein_1933 | alpha/beta hydrolase | - |
| G5S61_RS09760 () | 1950964..1952160 | + | 1197 | WP_005107451.1 | IS110-like element ISSfl4 family transposase | - |
| G5S61_RS09765 () | 1952177..1952536 | - | 360 | Protein_1935 | alpha/beta hydrolase | - |
| G5S61_RS09770 () | 1952536..1953456 | - | 921 | WP_039066017.1 | alpha/beta hydrolase | - |
| G5S61_RS09775 () | 1953594..1954028 | + | 435 | Protein_1937 | DNA-binding transcriptional regulator PgrR | - |
| G5S61_RS09785 () | 1955333..1955743 | + | 411 | Protein_1939 | YdaU family protein | - |
| G5S61_RS09790 () | 1955757..1956518 | - | 762 | Protein_1940 | IS3 family transposase | - |
| G5S61_RS09795 () | 1956590..1957746 | + | 1157 | WP_094081558.1 | IS3-like element IS600 family transposase | - |
| G5S61_RS09800 () | 1957803..1958251 | - | 449 | Protein_1942 | transposase | - |
| G5S61_RS23610 () | 1958775..1958944 | + | 170 | Protein_1943 | hypothetical protein | - |
| G5S61_RS09810 () | 1959090..1959836 | + | 747 | WP_000788996.1 | ATP-binding protein | - |
| G5S61_RS09815 () | 1959851..1960273 | + | 423 | WP_001118167.1 | DUF977 family protein | - |
| G5S61_RS09820 () | 1960331..1960687 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| G5S61_RS09825 () | 1960780..1960998 | + | 219 | WP_000256998.1 | DUF4014 family protein | - |
| G5S61_RS09830 () | 1961000..1961365 | + | 366 | WP_001229298.1 | HNH endonuclease signature motif containing protein | - |
| G5S61_RS09835 () | 1961362..1962027 | + | 666 | WP_000208062.1 | hypothetical protein | - |
| G5S61_RS09840 () | 1962027..1962392 | + | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| - | 1962777..1962835 | - | 59 | - | - | Antitoxin Detail |
| G5S61_RS09845 () | 1962847..1963002 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| G5S61_RS09855 () | 1964104..1964436 | + | 333 | WP_171764399.1 | hypothetical protein | - |
| G5S61_RS09860 () | 1964339..1964938 | + | 600 | WP_000940329.1 | DUF1367 family protein | - |
| G5S61_RS09865 () | 1964938..1965228 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| G5S61_RS09870 () | 1965225..1965779 | + | 555 | WP_000640143.1 | DUF1133 family protein | - |
| G5S61_RS09875 () | 1965932..1966105 | + | 174 | WP_000504450.1 | hypothetical protein | - |
| G5S61_RS09880 () | 1966167..1967323 | + | 1157 | WP_128600754.1 | IS3-like element IS600 family transposase | - |
| G5S61_RS09885 () | 1967316..1967876 | + | 561 | WP_072075205.1 | ORF6N domain-containing protein | - |
| G5S61_RS09910 () | 1968510..1970114 | + | 1605 | WP_025745148.1 | site-specific integrase | - |
| G5S61_RS09915 () | 1970836..1970988 | + | 153 | Protein_1961 | Rha family transcriptional regulator | - |
| G5S61_RS09920 () | 1971047..1971744 | + | 698 | WP_227804319.1 | IS1 family transposase | - |
| G5S61_RS09925 () | 1971760..1972665 | + | 906 | Protein_1963 | IS3 family transposase | - |
| G5S61_RS09930 () | 1972693..1973061 | + | 369 | WP_011069357.1 | hypothetical protein | - |
| G5S61_RS09935 () | 1973085..1973629 | + | 545 | Protein_1965 | tail fiber assembly protein | - |
| G5S61_RS09940 () | 1973653..1974921 | + | 1269 | WP_178986824.1 | prophage tail fiber N-terminal domain-containing protein | - |
| G5S61_RS09945 () | 1974872..1975496 | + | 625 | Protein_1967 | DUF4376 domain-containing protein | - |
| G5S61_RS09950 () | 1975697..1976554 | - | 858 | WP_039066024.1 | iron/manganese ABC transporter permease subunit SitD | - |
| G5S61_RS09955 () | 1976551..1977408 | - | 858 | WP_001101728.1 | iron/manganese ABC transporter permease subunit SitC | - |
| G5S61_RS09960 () | 1977405..1978232 | - | 828 | WP_000983722.1 | iron/manganese ABC transporter ATP-binding protein SitB | - |
| G5S61_RS09965 () | 1978232..1979146 | - | 915 | WP_000555620.1 | iron/manganese ABC transporter substrate-binding protein SitA | - |
| G5S61_RS09970 () | 1979608..1980249 | - | 642 | Protein_1972 | site-specific integrase | - |
| G5S61_RS09975 () | 1980303..1981000 | + | 698 | WP_227804319.1 | IS1 family transposase | - |
| G5S61_RS09980 () | 1981015..1981113 | - | 99 | Protein_1974 | killing protein KilR | - |
| G5S61_RS09985 () | 1981235..1982391 | + | 1157 | WP_149617748.1 | IS3-like element IS600 family transposase | - |
| G5S61_RS09995 () | 1983727..1984615 | - | 889 | Protein_1977 | Rha family transcriptional regulator | - |
| G5S61_RS10000 () | 1985119..1985328 | + | 210 | WP_128832265.1 | hypothetical protein | - |
| G5S61_RS10005 () | 1985838..1985921 | + | 84 | Protein_1979 | IS66 family insertion sequence element accessory protein TnpB | - |
| G5S61_RS10010 () | 1985984..1987140 | + | 1157 | WP_094105058.1 | IS3-like element IS600 family transposase | - |
| G5S61_RS10015 () | 1987201..1987338 | + | 138 | Protein_1981 | IS66 family insertion sequence element accessory protein TnpB | - |
| G5S61_RS10020 () | 1987335..1987685 | + | 351 | WP_005049241.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| G5S61_RS10025 () | 1987682..1989283 | + | 1602 | WP_004967149.1 | IS66-like element ISSfl3 family transposase | - |
| G5S61_RS10030 () | 1989315..1989428 | + | 114 | Protein_1984 | transposase | - |
| G5S61_RS10035 () | 1989424..1989591 | + | 168 | Protein_1985 | phage tail protein | - |
| G5S61_RS10045 () | 1990869..1991432 | + | 564 | WP_134805840.1 | DUF4376 domain-containing protein | - |
| G5S61_RS10050 () | 1991612..1993327 | - | 1716 | WP_128571583.1 | T3SS effector E3 ubiquitin-protein ligase IpaH3 | - |
| G5S61_RS10055 () | 1994069..1994515 | + | 447 | Protein_1989 | metallophosphoesterase | - |
| G5S61_RS10060 () | 1994580..1995736 | + | 1157 | WP_094105050.1 | IS3-like element IS600 family transposase | - |
| G5S61_RS10065 () | 1995780..1995968 | + | 189 | Protein_1991 | serine/threonine-protein phosphatase | - |
| G5S61_RS10070 () | 1995993..1996184 | - | 192 | WP_001296140.1 | YebW family protein | - |
| G5S61_RS10075 () | 1996289..1996525 | - | 237 | WP_001295499.1 | YebV family protein | - |
| G5S61_RS10080 () | 1996643..1998082 | - | 1440 | WP_000057029.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G5S61_RS10085 () | 1998162..2000795 | - | 2634 | WP_039066034.1 | lipid-binding membrane homeostasis protein YebT | - |
| G5S61_RS10090 () | 2000764..2002047 | - | 1284 | WP_039066036.1 | membrane integrity lipid transport subunit YebS | - |
| G5S61_RS10095 () | 2002177..2002674 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| G5S61_RS10100 () | 2002771..2003469 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| G5S61_RS10105 () | 2003489..2005537 | + | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| G5S61_RS10110 () | 2005729..2006610 | + | 882 | WP_000984517.1 | protease HtpX | - |
| G5S61_RS10115 () | 2006656..2008029 | - | 1374 | WP_001127218.1 | MFS transporter | - |
| G5S61_RS10120 () | 2008206..2008997 | + | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| G5S61_RS10125 () | 2009140..2009379 | - | 240 | WP_039066037.1 | YobH family protein | - |
| G5S61_RS10130 () | 2009538..2009681 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| G5S61_RS10135 () | 2009756..2010043 | + | 288 | WP_001006860.1 | YebO family protein | - |
| G5S61_RS10140 () | 2010713..2010856 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| G5S61_RS10145 () | 2010869..2011078 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| G5S61_RS10150 () | 2011244..2012053 | + | 810 | WP_039066038.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| G5S61_RS10155 () | 2012050..2012616 | - | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| G5S61_RS23615 () | 2012613..2012735 | - | 123 | WP_000547919.1 | hypothetical protein | - |
| G5S61_RS10165 () | 2013805..2014281 | - | 477 | WP_000156246.1 | DUF986 family protein | - |
| G5S61_RS10170 () | 2014336..2015187 | - | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| G5S61_RS10175 () | 2015200..2016000 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| G5S61_RS10180 () | 2016063..2017034 | - | 972 | WP_000150543.1 | PTS mannose transporter subunit IIAB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|