MGE detailed information
MGE type: Prophage MGE length: 29456 bp
Accession: NZ_CP049278 Location: 2188112..2217567 Organism: Shigella boydii strain 600690 Replicon: chromosome
Accession: NZ_CP049278 Location: 2188112..2217567 Organism: Shigella boydii strain 600690 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G5S56_RS10605 () | 2184195..2184836 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| G5S56_RS10610 () | 2184892..2186070 | - | 1179 | WP_000173505.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| G5S56_RS10615 () | 2186204..2186494 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| G5S56_RS10620 () | 2186561..2186917 | + | 357 | WP_001295500.1 | protein YebF | - |
| G5S56_RS10625 () | 2187244..2187903 | + | 660 | WP_000024749.1 | tellurite resistance TerB family protein | - |
| G5S56_RS10630 () | 2188112..2190172 | + | 2061 | WP_078166954.1 | oligopeptidase B | - |
| G5S56_RS10635 () | 2190169..2190831 | - | 663 | WP_000944257.1 | exodeoxyribonuclease X | - |
| G5S56_RS10640 () | 2190855..2191511 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| G5S56_RS10645 () | 2191613..2191843 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G5S56_RS10650 () | 2191982..2192356 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| G5S56_RS10655 () | 2192360..2193232 | + | 873 | WP_000879303.1 | copper homeostasis membrane protein CopD | - |
| G5S56_RS10660 () | 2193245..2193586 | + | 342 | WP_000976480.1 | YebY family protein | - |
| - | 2193614..2193848 | - | 235 | - | - | Antitoxin Detail |
| - | 2193744..2193847 | + | 104 | - | - | Toxin Detail |
| G5S56_RS10665 () | 2193969..2195008 | - | 1040 | Protein_2083 | phage integrase Arm DNA-binding domain-containing protein | - |
| G5S56_RS10670 () | 2195227..2196383 | + | 1157 | WP_134795703.1 | IS3 family transposase ISSd1 | Transposase |
| G5S56_RS10675 () | 2196425..2196931 | + | 507 | Protein_2085 | IS4 family transposase ISSfl1 | Transposase |
| G5S56_RS10680 () | 2196978..2197160 | + | 183 | WP_001224662.1 | hypothetical protein | - |
| G5S56_RS10685 () | 2197153..2197329 | + | 177 | WP_000753060.1 | hypothetical protein | - |
| G5S56_RS25180 () | 2197326..2197654 | + | 329 | Protein_2088 | hypothetical protein | - |
| G5S56_RS10695 () | 2197953..2198240 | - | 288 | WP_000090004.1 | hypothetical protein | - |
| G5S56_RS10700 () | 2198568..2199116 | + | 549 | WP_004992711.1 | ORF6N domain-containing protein | - |
| G5S56_RS10705 () | 2199386..2199541 | + | 156 | WP_086021052.1 | Hok/Gef family protein | - |
| G5S56_RS10710 () | 2199791..2200078 | + | 288 | WP_000687440.1 | hypothetical protein | - |
| G5S56_RS10715 () | 2200117..2200716 | + | 600 | WP_000940340.1 | DUF1367 family protein | - |
| G5S56_RS10720 () | 2200716..2201006 | + | 291 | WP_000228032.1 | DUF1364 domain-containing protein | - |
| G5S56_RS10725 () | 2201003..2201557 | + | 555 | WP_000640130.1 | DUF1133 family protein | - |
| G5S56_RS10730 () | 2201554..2201673 | + | 120 | WP_004977456.1 | ash family protein | - |
| G5S56_RS10735 () | 2201827..2202384 | + | 558 | WP_000218024.1 | ORF6N domain-containing protein | - |
| G5S56_RS10760 () | 2203583..2203798 | + | 216 | WP_000284485.1 | class II holin family protein | - |
| G5S56_RS10765 () | 2203798..2204295 | + | 498 | WP_000075178.1 | lysozyme RrrD | - |
| G5S56_RS10770 () | 2204292..2204756 | + | 465 | WP_171700999.1 | lysis protein | - |
| G5S56_RS25185 () | 2204894..2205000 | + | 107 | Protein_2101 | hypothetical protein | - |
| G5S56_RS10775 () | 2205028..2205774 | - | 747 | Protein_2102 | IS3 family transposase ISSd1 | Transposase |
| G5S56_RS10785 () | 2206959..2207564 | + | 606 | Protein_2104 | phage tail protein | - |
| G5S56_RS10790 () | 2207614..2208807 | + | 1194 | WP_134795624.1 | IS4 family transposase ISSfl1 | Transposase |
| G5S56_RS10795 () | 2208850..2209473 | + | 624 | WP_134795697.1 | DUF4376 domain-containing protein | - |
| G5S56_RS10805 () | 2209653..2211359 | - | 1707 | WP_000936821.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| G5S56_RS10810 () | 2212110..2212766 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| G5S56_RS10815 () | 2212767..2212958 | - | 192 | WP_001296140.1 | YebW family protein | - |
| G5S56_RS10820 () | 2213063..2213299 | - | 237 | WP_001295499.1 | YebV family protein | - |
| G5S56_RS10825 () | 2213415..2214854 | - | 1440 | Protein_2111 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G5S56_RS10830 () | 2214934..2217567 | - | 2634 | WP_004992636.1 | hypothetical protein | VF |
| G5S56_RS10835 () | 2217536..2218818 | - | 1283 | Protein_2113 | membrane integrity lipid transport subunit YebS | - |
| G5S56_RS10840 () | 2218948..2219445 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| G5S56_RS10845 () | 2219542..2220240 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| G5S56_RS10850 () | 2220260..2222308 | + | 2049 | WP_078167035.1 | carboxy terminal-processing peptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|