Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2193614..2193848 | Replicon | chromosome |
| Accession | NZ_CP049278 | ||
| Organism | Shigella boydii strain 600690 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2193744..2193847 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2193614..2193848 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G5S56_RS10635 | 2190169..2190831 | - | 663 | WP_000944257.1 | exodeoxyribonuclease X | - |
| G5S56_RS10640 | 2190855..2191511 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| G5S56_RS10645 | 2191613..2191843 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G5S56_RS10650 | 2191982..2192356 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| G5S56_RS10655 | 2192360..2193232 | + | 873 | WP_000879303.1 | copper homeostasis membrane protein CopD | - |
| G5S56_RS10660 | 2193245..2193586 | + | 342 | WP_000976480.1 | YebY family protein | - |
| - | 2193614..2193848 | - | 235 | - | - | Antitoxin |
| - | 2193744..2193847 | + | 104 | - | - | Toxin |
| G5S56_RS10665 | 2193969..2195008 | - | 1040 | Protein_2083 | phage integrase Arm DNA-binding domain-containing protein | - |
| G5S56_RS10670 | 2195227..2196383 | + | 1157 | WP_134795703.1 | IS3-like element IS600 family transposase | - |
| G5S56_RS10675 | 2196425..2196931 | + | 507 | Protein_2085 | transposase | - |
| G5S56_RS10680 | 2196978..2197160 | + | 183 | WP_001224662.1 | hypothetical protein | - |
| G5S56_RS10685 | 2197153..2197329 | + | 177 | WP_000753060.1 | hypothetical protein | - |
| G5S56_RS25180 | 2197326..2197654 | + | 329 | Protein_2088 | hypothetical protein | - |
| G5S56_RS10695 | 2197953..2198240 | - | 288 | WP_000090004.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 | 2188112..2217567 | 29455 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T151113 NZ_CP049278:2193744-2193847 [Shigella boydii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT151113 NZ_CP049278:c2193848-2193614 [Shigella boydii]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCAGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCAGTTTTTTTAT
