MGE detailed information
MGE type: Prophage MGE length: 30984 bp
Accession: NZ_CP049278 Location: 1633691..1664674 Organism: Shigella boydii strain 600690 Replicon: chromosome
Accession: NZ_CP049278 Location: 1633691..1664674 Organism: Shigella boydii strain 600690 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G5S56_RS07810 (1629654) | 1629654..1631013 | + | 1360 | Protein_1520 | anion permease | - |
| G5S56_RS07815 (1631196) | 1631196..1633457 | + | 2262 | WP_078166421.1 | hydratase | - |
| G5S56_RS07820 (1633691) | 1633691..1634974 | - | 1284 | WP_078166422.1 | putative acyl-CoA thioester hydrolase | - |
| G5S56_RS07825 (1635108) | 1635108..1636049 | - | 942 | Protein_1523 | hypothetical protein ; Integrase | Integrase |
| G5S56_RS07830 (1636111) | 1636111..1636344 | + | 234 | Protein_1524 | IS3 family transposase ISSfl10 | Transposase |
| G5S56_RS07840 (1637596) | 1637596..1637691 | - | 96 | WP_284522451.1 | host nuclease inhibitor GamL | - |
| G5S56_RS07845 (1637712) | 1637712..1637993 | - | 282 | WP_000934193.1 | hypothetical protein | - |
| G5S56_RS07850 (1638288) | 1638288..1639178 | - | 891 | WP_078167383.1 | Rha family phage regulatory protein | - |
| G5S56_RS07855 (1639834) | 1639834..1640082 | + | 249 | WP_000513533.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| G5S56_RS07860 (1640079) | 1640079..1640423 | + | 345 | WP_001016018.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| G5S56_RS07865 (1640538) | 1640538..1640708 | - | 171 | WP_164834428.1 | hypothetical protein | - |
| G5S56_RS07870 (1640830) | 1640830..1641549 | - | 720 | WP_000162429.1 | LexA family transcriptional regulator | - |
| G5S56_RS07875 (1641655) | 1641655..1641894 | + | 240 | WP_000171144.1 | helix-turn-helix transcriptional regulator | - |
| G5S56_RS25125 (1641941) | 1641941..1642198 | + | 258 | Protein_1534 | hypothetical protein | - |
| G5S56_RS07885 (1642420) | 1642420..1642626 | + | 207 | WP_284522452.1 | hypothetical protein | - |
| G5S56_RS07890 (1642683) | 1642683..1643305 | + | 623 | Protein_1536 | IS3-like element IS911 family transposase | - |
| G5S56_RS07895 (1643300) | 1643300..1643975 | + | 676 | Protein_1537 | putative HTH-type transcriptional regulator RhmR | VF |
| G5S56_RS07900 (1643990) | 1643990..1645195 | + | 1206 | WP_000174592.1 | L-rhamnonate dehydratase | - |
| G5S56_RS07905 (1645252) | 1645252..1646540 | + | 1289 | Protein_1539 | MFS transporter | - |
| G5S56_RS07910 (1646558) | 1646558..1647361 | + | 804 | WP_000992988.1 | 2-keto-3-deoxy-L-rhamnonate aldolase | - |
| G5S56_RS07915 (1647402) | 1647402..1648364 | - | 963 | WP_000140573.1 | Recombination-promoting nuclease RpnA | VF |
| G5S56_RS07920 (1648557) | 1648557..1649747 | - | 1191 | WP_001000371.1 | anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC | - |
| G5S56_RS07925 (1649744) | 1649744..1651003 | - | 1260 | WP_001209885.1 | glycerol-3-phosphate dehydrogenase subunit GlpB | - |
| G5S56_RS07930 (1650993) | 1650993..1652621 | - | 1629 | WP_000857259.1 | anaerobic glycerol-3-phosphate dehydrogenase subunit A | - |
| G5S56_RS07935 (1652894) | 1652894..1654252 | + | 1359 | WP_000948704.1 | glycerol-3-phosphate transporter | - |
| G5S56_RS07940 (1654257) | 1654257..1655333 | + | 1077 | WP_000772513.1 | glycerophosphodiester phosphodiesterase | - |
| G5S56_RS07945 (1655375) | 1655375..1655617 | - | 243 | Protein_1547 | LysR family transcriptional regulator | - |
| G5S56_RS25130 (1655612) | 1655612..1655716 | + | 105 | Protein_1548 | hypothetical protein | - |
| G5S56_RS07950 (1655796) | 1655796..1656446 | + | 651 | WP_078167132.1 | lipopolysaccharide kinase InaA | - |
| G5S56_RS07955 (1656500) | 1656500..1656754 | - | 255 | WP_000135037.1 | ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE | - |
| G5S56_RS07960 (1656754) | 1656754..1657884 | - | 1131 | WP_004990731.1 | class Ia ribonucleoside-diphosphate reductase subunit beta | - |
| G5S56_RS25135 (1657883) | 1657883..1657918 | + | 36 | Protein_1552 | hypothetical protein | - |
| G5S56_RS07965 (1658118) | 1658118..1660403 | - | 2286 | WP_078167131.1 | class 1a ribonucleoside-diphosphate reductase subunit alpha | - |
| G5S56_RS25625 (1660531) | 1660531..1660674 | + | 144 | WP_001300064.1 | protein YpaB | - |
| G5S56_RS07970 (1661099) | 1661099..1664674 | + | 3576 | Protein_1555 | AIDA-I family autotransporter adhesin YfaL/EhaC | - |
| G5S56_RS07975 (1664815) | 1664815..1665537 | - | 723 | WP_000990758.1 | bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG | - |
| G5S56_RS07980 (1665684) | 1665684..1668311 | + | 2628 | WP_001281263.1 | DNA topoisomerase (ATP-hydrolyzing) subunit A | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|