MGE detailed information
MGE type: Prophage MGE length: 42495 bp
Accession: NZ_CP049185 Location: 3591263..3633757 Organism: Shigella sonnei strain 19.0821.3486 Replicon: chromosome
Accession: NZ_CP049185 Location: 3591263..3633757 Organism: Shigella sonnei strain 19.0821.3486 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6O60_RS18325 (3587346) | 3587346..3588254 | - | 909 | WP_001090769.1 | transcriptional regulator MelR | - |
| G6O60_RS18330 (3588537) | 3588537..3589892 | + | 1356 | WP_000988025.1 | alpha-galactosidase | - |
| G6O60_RS18335 (3589995) | 3589995..3590846 | + | 852 | Protein_3570 | melibiose:sodium transporter MelB | - |
| G6O60_RS18340 (3590940) | 3590940..3592168 | + | 1229 | WP_167553805.1 | IS3 family transposase IS2 | Transposase |
| G6O60_RS18345 (3592180) | 3592180..3592752 | + | 573 | Protein_3572 | MFS transporter | - |
| G6O60_RS18350 (3592970) | 3592970..3593667 | + | 698 | WP_237158182.1 | IS1-like element IS1A family transposase | - |
| G6O60_RS18355 (3593602) | 3593602..3594297 | - | 696 | WP_000198732.1 | DUF2238 domain-containing protein | - |
| G6O60_RS18360 (3594420) | 3594420..3596066 | - | 1647 | WP_000066681.1 | class I fumarate hydratase | - |
| G6O60_RS18365 (3596144) | 3596144..3597484 | - | 1341 | WP_000899522.1 | anaerobic C4-dicarboxylate transporter DcuB | - |
| G6O60_RS18370 (3598055) | 3598055..3598774 | - | 720 | WP_000611285.1 | hypothetical protein | VF |
| G6O60_RS18375 (3598771) | 3598771..3600402 | - | 1632 | WP_001216495.1 | sensor histidine kinase | - |
| G6O60_RS18380 (3600583) | 3600583..3600813 | + | 231 | WP_000371698.1 | 4Fe-4S mono-cluster protein YjdI | - |
| G6O60_RS18385 (3600825) | 3600825..3601097 | + | 273 | WP_000405647.1 | GNAT family N-acetyltransferase | - |
| G6O60_RS18390 (3601324) | 3601324..3601620 | + | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| G6O60_RS18395 (3601648) | 3601648..3601821 | + | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| G6O60_RS18400 (3601940) | 3601940..3603457 | - | 1518 | Protein_3583 | lysine--tRNA ligase | - |
| G6O60_RS18405 (3603694) | 3603694..3605151 | - | 1458 | WP_000856831.1 | dipeptide/tripeptide permease DtpC | - |
| G6O60_RS18410 (3605210) | 3605210..3605467 | - | 258 | Protein_3585 | lysine decarboxylase LdcC | - |
| G6O60_RS18415 (3605513) | 3605513..3606668 | - | 1156 | Protein_3586 | IS3 family transposase IS600 | Transposase |
| G6O60_RS18420 (3606731) | 3606731..3607615 | - | 885 | Protein_3587 | lysine decarboxylase CadA | - |
| G6O60_RS18430 (3608946) | 3608946..3609959 | - | 1014 | Protein_3589 | lysine decarboxylase CadA | - |
| G6O60_RS18435 (3610039) | 3610039..3610407 | - | 369 | Protein_3590 | cadaverine/lysine antiporter | - |
| G6O60_RS18440 (3610498) | 3610498..3611652 | + | 1155 | Protein_3591 | IS3 family transposase | - |
| G6O60_RS18445 (3611739) | 3611739..3613082 | + | 1344 | Protein_3592 | IS4 family transposase IS4 | Transposase |
| G6O60_RS18450 (3613097) | 3613097..3614074 | - | 978 | Protein_3593 | cadaverine/lysine antiporter | - |
| G6O60_RS18455 (3614439) | 3614439..3615976 | - | 1538 | Protein_3594 | lysine decarboxylation/transport transcriptional activator CadC | - |
| G6O60_RS18465 (3616775) | 3616775..3617350 | - | 576 | WP_001188520.1 | transcriptional regulator | - |
| G6O60_RS18470 (3617387) | 3617387..3619084 | - | 1698 | WP_000068901.1 | protein-disulfide reductase DsbD | - |
| G6O60_RS18475 (3619060) | 3619060..3619398 | - | 339 | WP_000883400.1 | divalent cation tolerance protein CutA | - |
| G6O60_RS18480 (3619514) | 3619514..3620815 | - | 1302 | WP_000961959.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
| G6O60_RS18485 (3620933) | 3620933..3622369 | - | 1437 | WP_000069437.1 | aspartate ammonia-lyase | - |
| G6O60_RS18490 (3622706) | 3622706..3623176 | + | 471 | WP_001267444.1 | FxsA family protein | - |
| G6O60_RS18495 (3623198) | 3623198..3624454 | - | 1257 | WP_000015874.1 | L-methionine/branched-chain amino acid transporter | - |
| G6O60_RS18500 (3624730) | 3624730..3625023 | + | 294 | WP_001026276.1 | co-chaperone GroES | - |
| G6O60_RS18505 (3625067) | 3625067..3626713 | + | 1647 | WP_000729117.1 | hypothetical protein | VF |
| G6O60_RS18510 (3626851) | 3626851..3627204 | + | 354 | WP_000558209.1 | DUF4156 domain-containing protein | - |
| G6O60_RS18515 (3627407) | 3627407..3628192 | - | 786 | Protein_3605 | YjeJ family protein | - |
| G6O60_RS18520 (3628247) | 3628247..3628944 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| G6O60_RS18525 (3628958) | 3628958..3629053 | - | 96 | Protein_3607 | YjeJ family protein | - |
| G6O60_RS18530 (3629443) | 3629443..3630471 | - | 1029 | WP_000940553.1 | EF-P beta-lysylation protein EpmB | - |
| G6O60_RS18535 (3630513) | 3630513..3631079 | + | 567 | WP_000257278.1 | elongation factor P | - |
| G6O60_RS18540 (3631131) | 3631131..3631256 | + | 126 | WP_000977757.1 | lipoprotein antitoxin entericidin A | - |
| G6O60_RS18545 (3631367) | 3631367..3631513 | + | 147 | WP_000239596.1 | lipoprotein toxin entericidin B | - |
| G6O60_RS18550 (3631688) | 3631688..3632005 | + | 318 | WP_000118482.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| G6O60_RS18555 (3632002) | 3632002..3632535 | - | 534 | WP_001238369.1 | lipocalin Blc | - |
| G6O60_RS18560 (3632624) | 3632624..3633757 | - | 1134 | WP_005111907.1 | BlaEC family class C beta-lactamase | - |
| G6O60_RS18565 (3633820) | 3633820..3634179 | - | 360 | WP_001299198.1 | fumarate reductase subunit FrdD | - |
| G6O60_RS18570 (3634190) | 3634190..3634585 | - | 396 | WP_000208757.1 | fumarate reductase subunit FrdC | - |
| G6O60_RS18575 (3634596) | 3634596..3635330 | - | 735 | WP_000829504.1 | fumarate reductase iron-sulfur protein | - |
| G6O60_RS18580 (3635323) | 3635323..3637131 | - | 1809 | WP_001192972.1 | fumarate reductase (quinol) flavoprotein subunit | - |
| G6O60_RS18585 (3637456) | 3637456..3638433 | + | 978 | WP_000004771.1 | elongation factor P--(R)-beta-lysine ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|