MGE detailed information
MGE type: Prophage MGE length: 90566 bp
Accession: NZ_CP049185 Location: 323379..413944 Organism: Shigella sonnei strain 19.0821.3486 Replicon: chromosome
Accession: NZ_CP049185 Location: 323379..413944 Organism: Shigella sonnei strain 19.0821.3486 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6O60_RS01695 () | 318422..320158 | - | 1737 | WP_001025298.1 | arginine--tRNA ligase | - |
| G6O60_RS01700 () | 320374..320940 | + | 567 | WP_005140097.1 | VOC family protein | - |
| G6O60_RS01705 () | 320954..321700 | + | 747 | WP_001185741.1 | copper homeostasis protein CutC | - |
| G6O60_RS01710 () | 322088..323188 | + | 1101 | WP_001214330.1 | NapC/NirT family cytochrome c | - |
| G6O60_RS01715 () | 323213..323317 | + | 105 | WP_052942460.1 | twin-arginine translocation signal domain-containing protein | - |
| G6O60_RS01720 () | 323379..324535 | + | 1157 | WP_087879964.1 | IS3 family transposase IS600 | Transposase |
| G6O60_RS01725 () | 324618..326909 | + | 2292 | WP_005153493.1 | trimethylamine N-oxide reductase TorZ | - |
| G6O60_RS01730 () | 327074..328045 | - | 972 | WP_000564745.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| G6O60_RS01735 () | 328042..328785 | - | 744 | WP_000019601.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| G6O60_RS01740 () | 328826..329221 | - | 396 | WP_000252980.1 | MAPEG family protein | - |
| G6O60_RS01745 () | 329274..329621 | - | 348 | Protein_342 | DUF72 domain-containing protein | - |
| G6O60_RS01750 () | 330208..330759 | + | 552 | WP_000996134.1 | Tn3 family transposase TnpR_ISAli20 | Transposase |
| G6O60_RS01755 () | 331128..331790 | + | 663 | WP_000021003.1 | DNA N-6-adenine-methyltransferase | - |
| G6O60_RS01760 () | 332154..333043 | + | 890 | Protein_345 | helix-turn-helix domain-containing protein | - |
| G6O60_RS01765 () | 333043..333333 | + | 291 | WP_000666098.1 | hypothetical protein | - |
| G6O60_RS01770 () | 333654..333944 | + | 291 | WP_001216625.1 | hypothetical protein | - |
| G6O60_RS01775 () | 333944..334363 | + | 420 | WP_000882666.1 | hypothetical protein | - |
| G6O60_RS01780 () | 334531..334854 | + | 324 | WP_039059348.1 | hypothetical protein | - |
| G6O60_RS01785 () | 335284..335895 | + | 612 | WP_253939843.1 | hypothetical protein | - |
| G6O60_RS01790 () | 335947..337103 | + | 1157 | WP_087879964.1 | IS3 family transposase IS600 | Transposase |
| G6O60_RS01795 () | 337100..337273 | - | 174 | WP_005145943.1 | DUF1737 domain-containing protein | - |
| G6O60_RS01800 () | 337534..337869 | + | 336 | WP_032156133.1 | anti-adapter protein IraM | - |
| G6O60_RS01805 () | 338150..338281 | - | 132 | WP_000562553.1 | DUF3927 family protein | - |
| G6O60_RS01820 () | 339136..339990 | - | 855 | WP_000762867.1 | antitermination protein | - |
| G6O60_RS01825 () | 339987..340361 | - | 375 | WP_001215509.1 | RusA family crossover junction endodeoxyribonuclease | - |
| G6O60_RS01830 () | 340361..340618 | - | 258 | WP_001064800.1 | hypothetical protein | - |
| G6O60_RS01835 () | 340953..341751 | - | 799 | Protein_358 | IS21 family transposase IS21 | Transposase |
| G6O60_RS01840 () | 341751..342923 | - | 1173 | WP_047565716.1 | IS21 family transposase IS21 | Transposase |
| G6O60_RS01845 () | 342957..344077 | + | 1121 | Protein_360 | IS3 family transposase IS2 | Transposase |
| G6O60_RS01850 () | 344194..344642 | + | 449 | Protein_361 | IS3 family transposase IS600 | Transposase |
| G6O60_RS01860 () | 345411..346126 | + | 716 | Protein_363 | IS3 family transposase IS600 | Transposase |
| G6O60_RS01865 () | 346235..347107 | + | 873 | Protein_364 | phage tail protein | - |
| G6O60_RS01870 () | 347058..347681 | + | 624 | WP_000930149.1 | DUF4376 domain-containing protein | - |
| G6O60_RS01875 () | 347687..347791 | + | 105 | Protein_366 | tail fiber assembly protein | - |
| G6O60_RS01880 () | 347861..349613 | - | 1753 | Protein_367 | hypothetical protein | VF |
| G6O60_RS01885 () | 350214..350462 | - | 249 | WP_001217553.1 | DinI-like family protein | - |
| G6O60_RS01890 () | 350725..350820 | - | 96 | Protein_369 | hypothetical protein | - |
| G6O60_RS01895 () | 350817..351383 | - | 567 | WP_000891620.1 | hydrolase | - |
| G6O60_RS01900 () | 351693..353465 | + | 1773 | WP_001258664.1 | aspartate--tRNA ligase | - |
| G6O60_RS01905 () | 353583..354035 | + | 453 | WP_001308712.1 | dihydroneopterin triphosphate diphosphatase | - |
| G6O60_RS01910 () | 354064..354804 | + | 741 | WP_000907248.1 | hypothetical protein | VF |
| G6O60_RS01915 () | 354839..355360 | + | 522 | WP_005140141.1 | crossover junction endodeoxyribonuclease RuvC | - |
| G6O60_RS01920 () | 355362..355964 | - | 603 | WP_001024929.1 | YebB family permuted papain-like enzyme | - |
| G6O60_RS01925 () | 356037..356102 | + | 66 | WP_072095795.1 | stress response small protein YobI | - |
| G6O60_RS01930 () | 356241..356852 | + | 612 | WP_000580326.1 | Holliday junction branch migration protein RuvA | - |
| G6O60_RS01935 () | 356861..357871 | + | 1011 | WP_000568511.1 | Holliday junction branch migration DNA helicase RuvB | - |
| G6O60_RS01940 () | 358018..358803 | - | 786 | WP_000571478.1 | hypothetical protein | VF |
| G6O60_RS01945 () | 358800..359555 | - | 756 | WP_000202996.1 | hypothetical protein | VF |
| G6O60_RS01950 () | 359634..360566 | + | 933 | WP_001300644.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| G6O60_RS01955 () | 360582..361904 | + | 1323 | WP_001184041.1 | murein DD-endopeptidase MepM | - |
| G6O60_RS01960 () | 362024..362995 | + | 972 | WP_000448381.1 | hypothetical protein | VF |
| G6O60_RS01965 () | 363083..364540 | - | 1458 | Protein_384 | glycosyl hydrolase-related protein | - |
| G6O60_RS01975 () | 365309..366934 | - | 1626 | Protein_386 | alpha-mannosidase | - |
| G6O60_RS01980 () | 366971..368839 | - | 1869 | WP_000575888.1 | glycoside hydrolase family 127 protein | - |
| G6O60_RS01985 () | 368928..369167 | - | 240 | WP_000961944.1 | hypothetical protein | - |
| G6O60_RS01990 () | 369289..369986 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| G6O60_RS01995 () | 370107..370949 | + | 843 | WP_000546442.1 | Nif3-like dinuclear metal center hexameric protein | - |
| G6O60_RS02000 () | 371009..372451 | - | 1443 | WP_000091148.1 | pyruvate kinase | - |
| G6O60_RS02005 () | 372579..373448 | - | 870 | WP_001056711.1 | DNA-binding transcriptional regulator HexR | - |
| G6O60_RS02010 () | 373785..375260 | + | 1476 | WP_000301720.1 | glucose-6-phosphate dehydrogenase | - |
| G6O60_RS02015 () | 375495..377306 | + | 1812 | WP_001069438.1 | phosphogluconate dehydratase | - |
| G6O60_RS02020 () | 377343..377984 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| G6O60_RS02025 () | 378040..379218 | - | 1179 | WP_000173484.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| G6O60_RS02030 () | 379352..379642 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| G6O60_RS02035 () | 379709..380065 | + | 357 | WP_001295500.1 | protein YebF | - |
| G6O60_RS02040 () | 380392..381051 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| G6O60_RS02045 () | 381260..383320 | + | 2061 | WP_000936913.1 | oligopeptidase B | - |
| G6O60_RS02050 () | 383317..383979 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G6O60_RS02055 () | 384003..384659 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| G6O60_RS02060 () | 384761..384991 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G6O60_RS02065 () | 385130..385504 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| G6O60_RS02070 () | 385508..386380 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| G6O60_RS02075 () | 386393..386734 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 386762..386996 | - | 235 | - | - | Antitoxin Detail |
| - | 386892..386995 | + | 104 | - | - | Toxin Detail |
| G6O60_RS02080 () | 387117..388193 | - | 1077 | WP_001189101.1 | hypothetical protein ; Integrase | Integrase |
| G6O60_RS02085 () | 388230..388475 | - | 246 | Protein_408 | IS1 family transposase IS1R | Transposase |
| G6O60_RS02095 () | 389809..390263 | - | 455 | Protein_410 | IS1-like element IS1A family transposase | - |
| G6O60_RS02100 () | 390292..390552 | - | 261 | WP_077447296.1 | excisionase | - |
| G6O60_RS02105 () | 390697..391853 | + | 1157 | WP_254000227.1 | IS3 family transposase IS600 | Transposase |
| G6O60_RS02110 () | 391969..393684 | - | 1716 | WP_011310192.1 | hypothetical protein | VF |
| G6O60_RS02120 () | 395693..395866 | + | 174 | Protein_415 | metallophosphoesterase | - |
| G6O60_RS02130 () | 396632..396937 | + | 306 | Protein_417 | serine/threonine-protein phosphatase | - |
| G6O60_RS02135 () | 396995..398148 | + | 1154 | WP_254000228.1 | IS3 family transposase IS600 | Transposase |
| G6O60_RS02140 () | 398190..398390 | + | 201 | Protein_419 | serine/threonine-protein phosphatase | - |
| G6O60_RS02145 () | 398391..398582 | - | 192 | WP_001296140.1 | YebW family protein | - |
| G6O60_RS02150 () | 398687..398845 | - | 159 | Protein_421 | YebV family protein | - |
| G6O60_RS02155 () | 398903..399600 | + | 698 | WP_237158197.1 | IS1-like element IS1A family transposase | - |
| G6O60_RS02160 () | 399617..399700 | - | 84 | Protein_423 | DUF1480 family protein | - |
| G6O60_RS02165 () | 399818..401257 | - | 1440 | WP_005138560.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G6O60_RS02170 () | 401338..403971 | - | 2634 | WP_005138565.1 | hypothetical protein | VF |
| G6O60_RS02175 () | 403940..405223 | - | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| G6O60_RS02180 () | 405353..405850 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| G6O60_RS02185 () | 405947..406645 | + | 699 | WP_000431362.1 | RNA chaperone ProQ | - |
| G6O60_RS02190 () | 406665..408713 | + | 2049 | WP_011310196.1 | carboxy terminal-processing peptidase | - |
| G6O60_RS02195 () | 408905..409786 | + | 882 | WP_000984517.1 | protease HtpX | - |
| G6O60_RS02200 () | 409832..410895 | - | 1064 | Protein_431 | MFS transporter | - |
| G6O60_RS02205 () | 411072..411863 | + | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| G6O60_RS02210 () | 412006..412245 | - | 240 | WP_001211011.1 | YobH family protein | - |
| G6O60_RS02215 () | 412404..412547 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| G6O60_RS02220 () | 412622..412909 | + | 288 | WP_001006860.1 | YebO family protein | - |
| G6O60_RS02225 () | 413579..413722 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| G6O60_RS02230 () | 413735..413944 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| G6O60_RS02235 () | 414110..414919 | + | 810 | WP_000010143.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| G6O60_RS02240 () | 414916..415482 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| G6O60_RS02245 () | 415911..416369 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| G6O60_RS02250 () | 416424..417275 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| G6O60_RS02255 () | 417288..418088 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|