MGE detailed information
MGE type: Conjugative plasmid MGE length: 86136 bp
Accession: NZ_CP049180 Location: 1..86136 Organism: Shigella sonnei strain L4094 Replicon: plasmid pL4094
Accession: NZ_CP049180 Location: 1..86136 Organism: Shigella sonnei strain L4094 Replicon: plasmid pL4094
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6O64_RS24750 (67) | 67..471 | + | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| G6O64_RS24755 (535) | 535..723 | + | 189 | WP_001277253.1 | putative conjugal transfer protein TraS | - |
| G6O64_RS24760 (707) | 707..1507 | + | 801 | WP_107372244.1 | IncI1-type conjugal transfer protein TraT | - |
| G6O64_RS24765 (1597) | 1597..4641 | + | 3045 | WP_107372243.1 | IncI1-type conjugal transfer protein TraU | - |
| G6O64_RS24770 (4641) | 4641..5255 | + | 615 | WP_000337395.1 | IncI1-type conjugal transfer protein TraV | - |
| G6O64_RS24775 (5222) | 5222..6424 | + | 1203 | WP_107372242.1 | IncI1-type conjugal transfer protein TraW | - |
| G6O64_RS24780 (6453) | 6453..7037 | + | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| G6O64_RS24785 (7134) | 7134..9302 | + | 2169 | WP_001774191.1 | DotA/TraY family protein | - |
| G6O64_RS24790 (9376) | 9376..10026 | + | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| G6O64_RS24795 (10098) | 10098..10307 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| G6O64_RS24800 (10673) | 10673..10849 | + | 177 | WP_001054898.1 | hypothetical protein | - |
| G6O64_RS25330 (10914) | 10914..11009 | - | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| G6O64_RS24810 (11510) | 11510..11761 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| G6O64_RS24815 (11833) | 11833..11985 | - | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| - (12035) | 12035..12097 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (12035) | 12035..12097 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (12035) | 12035..12097 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (12035) | 12035..12097 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| G6O64_RS24820 (12612) | 12612..13391 | + | 780 | WP_275450201.1 | protein FinQ | - |
| G6O64_RS24825 (13698) | 13698..14906 | + | 1209 | WP_107372241.1 | hypothetical protein | VF |
| G6O64_RS24830 (14925) | 14925..15995 | + | 1071 | WP_000151590.1 | IncI1-type conjugal transfer protein TrbB | - |
| G6O64_RS24835 (15988) | 15988..18279 | + | 2292 | WP_011264051.1 | F-type conjugative transfer protein TrbC | - |
| G6O64_RS24840 (18316) | 18316..21015 | - | 2700 | WP_011264053.1 | Protein TraI | Relaxase |
| G6O64_RS24845 (21026) | 21026..21358 | - | 333 | WP_063119516.1 | IncI1-type relaxosome accessory protein NikA | - |
| G6O64_RS24850 (21592) | 21592..21927 | + | 336 | WP_000157082.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| G6O64_RS24855 (22013) | 22013..22861 | - | 849 | WP_012783929.1 | DUF4942 domain-containing protein | - |
| G6O64_RS24860 (23442) | 23442..23693 | + | 252 | WP_063117899.1 | hypothetical protein | - |
| G6O64_RS24865 (23724) | 23724..24647 | - | 924 | WP_063117900.1 | Recombination-promoting nuclease RpnD | VF |
| G6O64_RS24870 (24644) | 24644..25033 | - | 390 | WP_000833767.1 | hypothetical protein | - |
| G6O64_RS24875 (25210) | 25210..25476 | - | 267 | WP_000804663.1 | hypothetical protein | - |
| G6O64_RS24880 (25568) | 25568..26002 | - | 435 | WP_000218857.1 | hypothetical protein | - |
| G6O64_RS24885 (26731) | 26731..27231 | - | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| G6O64_RS24890 (27693) | 27693..28289 | - | 597 | WP_000977995.1 | hypothetical protein | - |
| G6O64_RS24895 (28286) | 28286..29005 | - | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| G6O64_RS24900 (29002) | 29002..29436 | - | 435 | WP_001402001.1 | conjugation system SOS inhibitor PsiB | - |
| G6O64_RS24905 (29489) | 29489..31447 | - | 1959 | WP_078207109.1 | ParB/RepB/Spo0J family partition protein | - |
| G6O64_RS24910 (31506) | 31506..31739 | - | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| G6O64_RS24915 (31797) | 31797..32324 | - | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| G6O64_RS24920 (32708) | 32708..32941 | - | 234 | WP_139288298.1 | hypothetical protein | - |
| G6O64_RS24925 (33094) | 33094..33285 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| G6O64_RS24930 (33282) | 33282..33704 | - | 423 | WP_000271727.1 | DUF1380 family protein | - |
| G6O64_RS24935 (33751) | 33751..34176 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| G6O64_RS24940 (34592) | 34592..35362 | - | 771 | WP_077132299.1 | hypothetical protein | - |
| G6O64_RS24945 (35407) | 35407..35925 | - | 519 | WP_223350510.1 | DUF1380 family protein | - |
| G6O64_RS24950 (35855) | 35855..36076 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| G6O64_RS24955 (36077) | 36077..36760 | - | 684 | WP_000086127.1 | DNA methylase | - |
| G6O64_RS24960 (36836) | 36836..37147 | - | 312 | WP_033863049.1 | hypothetical protein | - |
| G6O64_RS24965 (37151) | 37151..37573 | - | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| G6O64_RS24970 (37576) | 37576..38556 | - | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| G6O64_RS24975 (38894) | 38894..39229 | + | 336 | WP_001340323.1 | hypothetical protein | - |
| G6O64_RS24980 (39234) | 39234..39320 | - | 87 | Protein_47 | hypothetical protein | - |
| G6O64_RS24985 (39324) | 39324..40226 | - | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| G6O64_RS24990 (40644) | 40644..40892 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| G6O64_RS24995 (40889) | 40889..41326 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| G6O64_RS25000 (41326) | 41326..42597 | + | 1272 | WP_032291125.1 | Y-family DNA polymerase | - |
| G6O64_RS25005 (42809) | 42809..43435 | + | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| G6O64_RS25010 (43432) | 43432..43734 | + | 303 | WP_001245884.1 | hypothetical protein | - |
| G6O64_RS25015 (44285) | 44285..45631 | - | 1347 | WP_001132021.1 | protein YagA | - |
| G6O64_RS25020 (45984) | 45984..46586 | + | 603 | WP_032291854.1 | ProQ/FINO family protein | - |
| G6O64_RS25025 (46642) | 46642..47151 | + | 510 | WP_032291091.1 | hypothetical protein | - |
| G6O64_RS25030 (47467) | 47467..47922 | - | 456 | Protein_57 | 3'-5' exonuclease | - |
| G6O64_RS25035 (47913) | 47913..48086 | + | 174 | Protein_58 | IS6 family transposase IS15DI | Transposase |
| G6O64_RS25040 (48138) | 48138..48287 | + | 150 | Protein_59 | cupin fold metalloprotein, WbuC family | - |
| G6O64_RS25045 (48334) | 48334..49209 | - | 876 | WP_011091028.1 | Beta-lactamase CTX-M-1 | ARG |
| G6O64_RS25050 (49465) | 49465..49782 | - | 318 | Protein_61 | IS1380 family transposase ISEcp1 | Transposase |
| G6O64_RS25055 (49774) | 49774..50031 | - | 258 | Protein_62 | IS1380 family transposase ISEcp1 | Transposase |
| G6O64_RS25060 (50031) | 50031..50300 | - | 270 | WP_032291093.1 | type II toxin-antitoxin system antitoxin YacA | - |
| G6O64_RS25065 (51211) | 51211..52242 | - | 1032 | WP_000907866.1 | plasmid replication initiator RepA | - |
| G6O64_RS25070 (53200) | 53200..53358 | + | 159 | Protein_65 | ash family protein | - |
| G6O64_RS25075 (53396) | 53396..53683 | + | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| G6O64_RS25080 (54125) | 54125..54658 | + | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| G6O64_RS25085 (54912) | 54912..55595 | + | 684 | WP_023196143.1 | conjugal transfer protein TraC | - |
| G6O64_RS25090 (55767) | 55767..56021 | + | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| G6O64_RS25095 (56282) | 56282..56548 | + | 267 | WP_001545761.1 | hypothetical protein | - |
| G6O64_RS25100 (57520) | 57520..58587 | + | 1068 | WP_001545759.1 | hypothetical protein | VF |
| G6O64_RS25105 (58587) | 58587..59024 | + | 438 | WP_001545758.1 | hypothetical protein | VF |
| G6O64_RS25110 (59038) | 59038..60720 | + | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| G6O64_RS25115 (60713) | 60713..62008 | + | 1296 | WP_016245572.1 | type 4b pilus protein PilO2 | - |
| G6O64_RS25120 (61995) | 61995..62447 | + | 453 | WP_001247333.1 | hypothetical protein | VF |
| G6O64_RS25125 (62458) | 62458..64011 | + | 1554 | WP_001545756.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| G6O64_RS25130 (64024) | 64024..65109 | + | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| G6O64_RS25135 (65126) | 65126..65740 | + | 615 | WP_000908227.1 | hypothetical protein | VF |
| G6O64_RS25140 (65750) | 65750..66310 | + | 561 | WP_000014005.1 | hypothetical protein | VF |
| G6O64_RS25145 (66295) | 66295..66951 | + | 657 | WP_001193549.1 | hypothetical protein | VF |
| G6O64_RS25150 (66951) | 66951..68243 | + | 1293 | WP_001390622.1 | hypothetical protein | VF |
| G6O64_RS25155 (68240) | 68240..68488 | - | 249 | WP_001349157.1 | hypothetical protein | - |
| G6O64_RS25160 (69657) | 69657..70010 | - | 354 | WP_001393368.1 | hypothetical protein | - |
| G6O64_RS25165 (70009) | 70009..71163 | + | 1155 | WP_001139958.1 | site-specific integrase | - |
| G6O64_RS25170 (71314) | 71314..72138 | + | 825 | WP_001545755.1 | conjugal transfer protein TraE | - |
| G6O64_RS25175 (72224) | 72224..73426 | + | 1203 | WP_171776325.1 | conjugal transfer protein TraF | - |
| G6O64_RS25180 (73486) | 73486..74070 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| G6O64_RS25185 (74465) | 74465..74923 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| G6O64_RS25190 (74920) | 74920..75738 | + | 819 | WP_097763371.1 | hypothetical protein | VF |
| G6O64_RS25195 (75735) | 75735..76883 | + | 1149 | WP_001024972.1 | putative protein YggR | VF |
| G6O64_RS25200 (76880) | 76880..77170 | + | 291 | WP_001314267.1 | hypothetical protein | - |
| G6O64_RS25205 (77185) | 77185..77736 | + | 552 | WP_000014586.1 | Phospholipase D | VF |
| G6O64_RS25210 (77826) | 77826..81590 | + | 3765 | WP_001141540.1 | DUF5710 domain-containing protein | - |
| G6O64_RS25215 (81608) | 81608..81955 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| G6O64_RS25220 (81952) | 81952..82644 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| G6O64_RS25225 (82655) | 82655..83638 | + | 984 | WP_001191879.1 | hypothetical protein | VF |
| G6O64_RS25230 (83641) | 83641..84930 | + | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| G6O64_RS25235 (84930) | 84930..85634 | + | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|