MGE detailed information
MGE type: Conjugative plasmid MGE length: 86039 bp
Accession: NZ_CP049178 Location: 1..86039 Organism: Shigella sonnei strain 1205.3131 Replicon: plasmid p1205-3131
Accession: NZ_CP049178 Location: 1..86039 Organism: Shigella sonnei strain 1205.3131 Replicon: plasmid p1205-3131
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6O63_RS24735 (918) | 918..1520 | + | 603 | WP_032291854.1 | ProQ/FINO family protein | - |
| G6O63_RS24740 (1576) | 1576..2085 | + | 510 | WP_032291091.1 | hypothetical protein | - |
| G6O63_RS24745 (2401) | 2401..2856 | - | 456 | Protein_3 | 3'-5' exonuclease | - |
| G6O63_RS24750 (2847) | 2847..3020 | + | 174 | Protein_4 | IS6 family transposase IS15DI | Transposase |
| G6O63_RS24755 (3072) | 3072..3221 | + | 150 | Protein_5 | cupin fold metalloprotein, WbuC family | - |
| G6O63_RS24760 (3268) | 3268..4143 | - | 876 | WP_011091028.1 | Beta-lactamase CTX-M-1 | ARG |
| G6O63_RS24765 (4399) | 4399..4716 | - | 318 | Protein_7 | IS1380 family transposase ISEcp1 | Transposase |
| G6O63_RS24770 (4708) | 4708..4965 | - | 258 | Protein_8 | IS1380 family transposase ISEcp1 | Transposase |
| G6O63_RS24775 (4965) | 4965..5234 | - | 270 | WP_032291093.1 | type II toxin-antitoxin system antitoxin YacA | - |
| G6O63_RS24780 (6145) | 6145..7176 | - | 1032 | WP_000907880.1 | plasmid replication initiator RepA | - |
| G6O63_RS24785 (8135) | 8135..8293 | + | 159 | Protein_11 | ash family protein | - |
| G6O63_RS24790 (8331) | 8331..8618 | + | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| G6O63_RS24795 (9060) | 9060..9593 | + | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| G6O63_RS24800 (9847) | 9847..10530 | + | 684 | WP_023196143.1 | conjugal transfer protein TraC | - |
| G6O63_RS24805 (10702) | 10702..10956 | + | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| G6O63_RS24810 (11217) | 11217..11483 | + | 267 | WP_001545761.1 | hypothetical protein | - |
| G6O63_RS24815 (12455) | 12455..13522 | + | 1068 | WP_001545759.1 | hypothetical protein | VF |
| G6O63_RS24820 (13522) | 13522..13959 | + | 438 | WP_001545758.1 | hypothetical protein | VF |
| G6O63_RS24825 (13973) | 13973..15655 | + | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| G6O63_RS24830 (15648) | 15648..16943 | + | 1296 | WP_016245572.1 | type 4b pilus protein PilO2 | - |
| G6O63_RS24835 (16930) | 16930..17382 | + | 453 | WP_001247333.1 | hypothetical protein | VF |
| G6O63_RS24840 (17393) | 17393..18946 | + | 1554 | WP_001545756.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| G6O63_RS24845 (18959) | 18959..20044 | + | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| G6O63_RS24850 (20061) | 20061..20675 | + | 615 | WP_000908227.1 | hypothetical protein | VF |
| G6O63_RS24855 (20685) | 20685..21245 | + | 561 | WP_000014005.1 | hypothetical protein | VF |
| G6O63_RS24860 (21230) | 21230..21886 | + | 657 | WP_001193549.1 | hypothetical protein | VF |
| G6O63_RS24865 (21874) | 21874..23073 | + | 1200 | WP_254000390.1 | hypothetical protein | VF |
| G6O63_RS24870 (24821) | 24821..25975 | + | 1155 | WP_001139958.1 | site-specific integrase | - |
| G6O63_RS24875 (26126) | 26126..26950 | + | 825 | WP_001545755.1 | conjugal transfer protein TraE | - |
| G6O63_RS24880 (27036) | 27036..28238 | + | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| G6O63_RS24885 (28298) | 28298..28882 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| G6O63_RS24890 (29277) | 29277..29735 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| G6O63_RS24895 (29732) | 29732..30550 | + | 819 | WP_097763371.1 | hypothetical protein | VF |
| G6O63_RS24900 (30547) | 30547..31695 | + | 1149 | WP_001024972.1 | putative protein YggR | VF |
| G6O63_RS24905 (31692) | 31692..31982 | + | 291 | WP_001314267.1 | hypothetical protein | - |
| G6O63_RS24910 (31997) | 31997..32548 | + | 552 | WP_000014586.1 | Phospholipase D | VF |
| G6O63_RS24915 (32638) | 32638..36402 | + | 3765 | WP_001141540.1 | DUF5710 domain-containing protein | - |
| G6O63_RS24920 (36420) | 36420..36767 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| G6O63_RS24925 (36764) | 36764..37456 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| G6O63_RS24930 (37467) | 37467..38450 | + | 984 | WP_001191879.1 | hypothetical protein | VF |
| G6O63_RS24935 (38453) | 38453..39742 | + | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| G6O63_RS24940 (39742) | 39742..40446 | + | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| G6O63_RS24945 (40446) | 40446..40973 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| G6O63_RS24950 (41024) | 41024..41428 | + | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| G6O63_RS24955 (41492) | 41492..41680 | + | 189 | WP_001277253.1 | putative conjugal transfer protein TraS | - |
| G6O63_RS24960 (41664) | 41664..42464 | + | 801 | WP_107372244.1 | IncI1-type conjugal transfer protein TraT | - |
| G6O63_RS24965 (42554) | 42554..45598 | + | 3045 | WP_107372243.1 | IncI1-type conjugal transfer protein TraU | - |
| G6O63_RS24970 (45598) | 45598..46212 | + | 615 | WP_000337395.1 | IncI1-type conjugal transfer protein TraV | - |
| G6O63_RS24975 (46179) | 46179..47381 | + | 1203 | WP_107372242.1 | IncI1-type conjugal transfer protein TraW | - |
| G6O63_RS24980 (47410) | 47410..47994 | + | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| G6O63_RS24985 (48091) | 48091..50259 | + | 2169 | WP_001774191.1 | DotA/TraY family protein | - |
| G6O63_RS24990 (50333) | 50333..50983 | + | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| G6O63_RS24995 (51055) | 51055..51264 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| G6O63_RS25000 (51630) | 51630..51806 | + | 177 | WP_001054898.1 | hypothetical protein | - |
| G6O63_RS25315 (51871) | 51871..51966 | - | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| G6O63_RS25010 (52467) | 52467..52718 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| G6O63_RS25015 (52790) | 52790..52942 | - | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| - (52992) | 52992..53054 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (52992) | 52992..53054 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (52992) | 52992..53054 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (52992) | 52992..53054 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| G6O63_RS25020 (53569) | 53569..54348 | + | 780 | WP_275450201.1 | protein FinQ | - |
| G6O63_RS25025 (54655) | 54655..55863 | + | 1209 | WP_107372241.1 | hypothetical protein | VF |
| G6O63_RS25030 (55882) | 55882..56952 | + | 1071 | WP_000151590.1 | IncI1-type conjugal transfer protein TrbB | - |
| G6O63_RS25035 (56945) | 56945..59236 | + | 2292 | WP_011264051.1 | F-type conjugative transfer protein TrbC | - |
| G6O63_RS25040 (59273) | 59273..61972 | - | 2700 | WP_011264053.1 | Protein TraI | Relaxase |
| G6O63_RS25045 (61983) | 61983..62315 | - | 333 | WP_063119516.1 | IncI1-type relaxosome accessory protein NikA | - |
| G6O63_RS25050 (62549) | 62549..62884 | + | 336 | WP_000157082.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| G6O63_RS25055 (62970) | 62970..63818 | - | 849 | WP_012783929.1 | DUF4942 domain-containing protein | - |
| G6O63_RS25060 (64399) | 64399..64650 | + | 252 | WP_063117899.1 | hypothetical protein | - |
| G6O63_RS25065 (64681) | 64681..65604 | - | 924 | WP_171799756.1 | Recombination-promoting nuclease RpnD | VF |
| G6O63_RS25070 (65601) | 65601..65990 | - | 390 | WP_000833767.1 | hypothetical protein | - |
| G6O63_RS25075 (66167) | 66167..66433 | - | 267 | WP_001247860.1 | hypothetical protein | - |
| G6O63_RS25080 (66526) | 66526..66960 | - | 435 | WP_000218862.1 | hypothetical protein | - |
| G6O63_RS25085 (67695) | 67695..68195 | - | 501 | WP_014065718.1 | antirestriction protein ArdA | - |
| G6O63_RS25090 (68657) | 68657..69253 | - | 597 | WP_000977995.1 | hypothetical protein | - |
| G6O63_RS25095 (69250) | 69250..69969 | - | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| G6O63_RS25100 (69966) | 69966..70400 | - | 435 | WP_001578018.1 | conjugation system SOS inhibitor PsiB | - |
| G6O63_RS25105 (70455) | 70455..72413 | - | 1959 | WP_001401579.1 | ParB/RepB/Spo0J family partition protein | - |
| G6O63_RS25110 (72472) | 72472..72705 | - | 234 | WP_000006024.1 | DUF905 domain-containing protein | - |
| G6O63_RS25115 (72763) | 72763..73290 | - | 528 | WP_021532391.1 | single-stranded DNA-binding protein | - |
| G6O63_RS25120 (73674) | 73674..73988 | - | 315 | WP_001434357.1 | hypothetical protein | - |
| G6O63_RS25125 (74059) | 74059..74250 | - | 192 | WP_001493747.1 | hypothetical protein | - |
| G6O63_RS25130 (74247) | 74247..74669 | - | 423 | WP_000271680.1 | DUF1380 family protein | - |
| G6O63_RS25135 (74716) | 74716..75141 | - | 426 | WP_001198900.1 | antirestriction protein | - |
| G6O63_RS25140 (75557) | 75557..76327 | - | 771 | WP_171799755.1 | hypothetical protein | - |
| G6O63_RS25145 (76372) | 76372..76890 | - | 519 | WP_223350510.1 | DUF1380 family protein | - |
| G6O63_RS25150 (76820) | 76820..77041 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| G6O63_RS25155 (77042) | 77042..77725 | - | 684 | WP_000086127.1 | DNA methylase | - |
| G6O63_RS25160 (77801) | 77801..78112 | - | 312 | WP_033863049.1 | hypothetical protein | - |
| G6O63_RS25165 (78116) | 78116..78538 | - | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| G6O63_RS25170 (78541) | 78541..79521 | - | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| G6O63_RS25175 (79859) | 79859..80194 | + | 336 | WP_001340323.1 | hypothetical protein | - |
| G6O63_RS25180 (80199) | 80199..80285 | - | 87 | Protein_90 | hypothetical protein | - |
| G6O63_RS25185 (80289) | 80289..81191 | - | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| G6O63_RS25190 (81609) | 81609..81857 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| G6O63_RS25195 (81854) | 81854..82291 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| G6O63_RS25200 (82291) | 82291..83562 | + | 1272 | WP_032291125.1 | Y-family DNA polymerase | - |
| G6O63_RS25205 (83758) | 83758..84384 | + | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| G6O63_RS25210 (84381) | 84381..84683 | + | 303 | WP_001245884.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|