MGE detailed information
MGE type: Prophage MGE length: 90564 bp
Accession: NZ_CP049169 Location: 3991896..4082459 Organism: Shigella sonnei strain 19.1125.3493 Replicon: chromosome
Accession: NZ_CP049169 Location: 3991896..4082459 Organism: Shigella sonnei strain 19.1125.3493 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6O58_RS19975 () | 3987752..3988552 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| G6O58_RS19980 () | 3988565..3989416 | + | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| G6O58_RS19985 () | 3989471..3989929 | + | 459 | WP_000156255.1 | DUF986 family protein | - |
| G6O58_RS19990 () | 3990358..3990924 | + | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| G6O58_RS19995 () | 3990921..3991730 | - | 810 | WP_000010143.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| G6O58_RS20000 () | 3991896..3992105 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| G6O58_RS20005 () | 3992118..3992261 | - | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| G6O58_RS20010 () | 3992931..3993218 | - | 288 | WP_001006860.1 | YebO family protein | - |
| G6O58_RS20015 () | 3993293..3993436 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| G6O58_RS20020 () | 3993595..3993834 | + | 240 | WP_001211011.1 | YobH family protein | - |
| G6O58_RS20025 () | 3993977..3994768 | - | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| G6O58_RS20030 () | 3994945..3996008 | + | 1064 | Protein_3899 | MFS transporter | - |
| G6O58_RS20035 () | 3996054..3996935 | - | 882 | WP_000984517.1 | protease HtpX | - |
| G6O58_RS20040 () | 3997127..3999175 | - | 2049 | WP_011310196.1 | carboxy terminal-processing peptidase | - |
| G6O58_RS20045 () | 3999195..3999893 | - | 699 | WP_000431362.1 | RNA chaperone ProQ | - |
| G6O58_RS20050 () | 3999990..4000487 | - | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| G6O58_RS20055 () | 4000617..4001900 | + | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| G6O58_RS20060 () | 4001869..4004502 | + | 2634 | WP_005138565.1 | hypothetical protein | VF |
| G6O58_RS20065 () | 4004583..4006022 | + | 1440 | WP_005138560.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G6O58_RS20070 () | 4006140..4006223 | + | 84 | Protein_3907 | DUF1480 family protein | - |
| G6O58_RS20080 () | 4006995..4007153 | + | 159 | Protein_3909 | YebV family protein | - |
| G6O58_RS20085 () | 4007258..4007449 | + | 192 | WP_001296140.1 | YebW family protein | - |
| G6O58_RS20090 () | 4007450..4007650 | - | 201 | Protein_3911 | serine/threonine-protein phosphatase | - |
| G6O58_RS20095 () | 4007692..4008846 | - | 1155 | Protein_3912 | IS3 family transposase ISSd1 | Transposase |
| G6O58_RS20100 () | 4008904..4009209 | - | 306 | Protein_3913 | serine/threonine-protein phosphatase | - |
| G6O58_RS20105 () | 4009264..4009961 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| G6O58_RS20110 () | 4009975..4010148 | - | 174 | Protein_3915 | metallophosphoesterase | - |
| G6O58_RS20115 () | 4010799..4011953 | + | 1155 | Protein_3916 | IS3 family transposase ISSd1 | Transposase |
| G6O58_RS20120 () | 4012155..4013870 | + | 1716 | WP_011310192.1 | hypothetical protein | VF |
| G6O58_RS20125 () | 4013986..4015141 | - | 1156 | Protein_3918 | IS3 family transposase IS600 | Transposase |
| G6O58_RS20130 () | 4015286..4015546 | + | 261 | WP_077447296.1 | excisionase | - |
| G6O58_RS20135 () | 4015575..4016029 | + | 455 | Protein_3920 | IS1-like element IS1A family transposase | - |
| G6O58_RS20140 () | 4016124..4017353 | + | 1230 | WP_086558215.1 | IS3 family transposase IS2 | Transposase |
| G6O58_RS20145 () | 4017364..4017609 | + | 246 | Protein_3922 | IS1 family transposase IS1R | Transposase |
| G6O58_RS20150 () | 4017646..4018722 | + | 1077 | WP_001189101.1 | hypothetical protein ; Integrase | Integrase |
| - | 4018843..4019077 | + | 235 | - | - | Antitoxin Detail |
| - | 4018844..4018947 | - | 104 | - | - | Toxin Detail |
| G6O58_RS20155 () | 4019105..4019446 | - | 342 | WP_000976476.1 | YebY family protein | - |
| G6O58_RS20160 () | 4019459..4020331 | - | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| G6O58_RS20165 () | 4020335..4020709 | - | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| G6O58_RS20170 () | 4020848..4021078 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G6O58_RS20175 () | 4021180..4021836 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| G6O58_RS20180 () | 4021860..4022522 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G6O58_RS20185 () | 4022519..4024579 | - | 2061 | WP_000936913.1 | oligopeptidase B | - |
| G6O58_RS20190 () | 4024788..4025447 | - | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| G6O58_RS20195 () | 4025774..4026130 | - | 357 | WP_001295500.1 | protein YebF | - |
| G6O58_RS20200 () | 4026197..4026487 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| G6O58_RS20205 () | 4026621..4027799 | + | 1179 | WP_000173484.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| G6O58_RS20210 () | 4027855..4028496 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| G6O58_RS20215 () | 4028533..4030344 | - | 1812 | WP_001069438.1 | phosphogluconate dehydratase | - |
| G6O58_RS20220 () | 4030579..4032054 | - | 1476 | WP_000301720.1 | glucose-6-phosphate dehydrogenase | - |
| G6O58_RS20225 () | 4032391..4033260 | + | 870 | WP_001056711.1 | DNA-binding transcriptional regulator HexR | - |
| G6O58_RS20230 () | 4033388..4034830 | + | 1443 | WP_000091148.1 | pyruvate kinase | - |
| G6O58_RS20235 () | 4034890..4035732 | - | 843 | WP_000546442.1 | Nif3-like dinuclear metal center hexameric protein | - |
| G6O58_RS20245 () | 4036672..4036911 | + | 240 | WP_000961944.1 | hypothetical protein | - |
| G6O58_RS20250 () | 4037000..4038868 | + | 1869 | WP_000575888.1 | glycoside hydrolase family 127 protein | - |
| G6O58_RS20255 () | 4038905..4040530 | + | 1626 | Protein_3944 | alpha-mannosidase | - |
| G6O58_RS20260 () | 4040586..4041283 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| G6O58_RS20265 () | 4041299..4042756 | + | 1458 | Protein_3946 | glycosyl hydrolase-related protein | - |
| G6O58_RS20270 () | 4042844..4043815 | - | 972 | WP_000448381.1 | hypothetical protein | VF |
| G6O58_RS20275 () | 4043935..4045257 | - | 1323 | WP_001184041.1 | murein DD-endopeptidase MepM | - |
| G6O58_RS20280 () | 4045273..4046205 | - | 933 | WP_001300644.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| G6O58_RS20285 () | 4046284..4047039 | + | 756 | WP_000202996.1 | hypothetical protein | VF |
| G6O58_RS20290 () | 4047036..4047821 | + | 786 | WP_000571478.1 | hypothetical protein | VF |
| G6O58_RS20295 () | 4047968..4048978 | - | 1011 | WP_000568511.1 | Holliday junction branch migration DNA helicase RuvB | - |
| G6O58_RS20300 () | 4048987..4049598 | - | 612 | WP_000580326.1 | Holliday junction branch migration protein RuvA | - |
| G6O58_RS20305 () | 4049737..4049802 | - | 66 | WP_072095795.1 | stress response small protein YobI | - |
| G6O58_RS20310 () | 4049875..4050477 | + | 603 | WP_001024929.1 | YebB family permuted papain-like enzyme | - |
| G6O58_RS20315 () | 4050479..4051000 | - | 522 | WP_005140141.1 | crossover junction endodeoxyribonuclease RuvC | - |
| G6O58_RS20320 () | 4051035..4051775 | - | 741 | WP_000907248.1 | hypothetical protein | VF |
| G6O58_RS20325 () | 4051804..4052256 | - | 453 | WP_001308712.1 | dihydroneopterin triphosphate diphosphatase | - |
| G6O58_RS20330 () | 4052374..4054146 | - | 1773 | WP_001258664.1 | aspartate--tRNA ligase | - |
| G6O58_RS20335 () | 4054456..4055022 | + | 567 | WP_000891620.1 | hydrolase | - |
| G6O58_RS20340 () | 4055019..4055114 | + | 96 | Protein_3961 | hypothetical protein | - |
| G6O58_RS20345 () | 4055377..4055625 | + | 249 | WP_001217553.1 | DinI-like family protein | - |
| G6O58_RS20350 () | 4056226..4057978 | + | 1753 | Protein_3963 | hypothetical protein | VF |
| G6O58_RS20355 () | 4058048..4058152 | - | 105 | Protein_3964 | tail fiber assembly protein | - |
| G6O58_RS20360 () | 4058158..4058781 | - | 624 | WP_000930149.1 | DUF4376 domain-containing protein | - |
| G6O58_RS20365 () | 4058732..4059604 | - | 873 | Protein_3966 | phage tail protein | - |
| G6O58_RS20370 () | 4059713..4060428 | - | 716 | Protein_3967 | IS3 family transposase IS600 | Transposase |
| G6O58_RS20375 () | 4060483..4061180 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| G6O58_RS20380 () | 4061197..4061645 | - | 449 | Protein_3969 | IS3 family transposase IS600 | Transposase |
| G6O58_RS20385 () | 4061762..4062882 | - | 1121 | Protein_3970 | IS3 family transposase IS2 | Transposase |
| G6O58_RS20390 () | 4062916..4064088 | + | 1173 | WP_047565716.1 | IS21 family transposase IS21 | Transposase |
| G6O58_RS20395 () | 4064088..4064885 | + | 798 | WP_146707928.1 | IS21 family transposase IS21 | Transposase |
| G6O58_RS20400 () | 4065220..4065477 | + | 258 | WP_001064800.1 | hypothetical protein | - |
| G6O58_RS20405 () | 4065477..4065851 | + | 375 | WP_001215509.1 | RusA family crossover junction endodeoxyribonuclease | - |
| G6O58_RS20410 () | 4065848..4066702 | + | 855 | WP_000762867.1 | antitermination protein | - |
| G6O58_RS20425 () | 4067557..4067688 | + | 132 | WP_000562553.1 | DUF3927 family protein | - |
| G6O58_RS20430 () | 4067969..4068304 | - | 336 | WP_032156133.1 | anti-adapter protein IraM | - |
| G6O58_RS20435 () | 4068565..4068738 | + | 174 | WP_005145943.1 | DUF1737 domain-containing protein | - |
| G6O58_RS20445 () | 4069943..4070554 | - | 612 | WP_253939843.1 | hypothetical protein | - |
| G6O58_RS20450 () | 4070984..4071307 | - | 324 | WP_039059348.1 | hypothetical protein | - |
| G6O58_RS20455 () | 4071475..4071894 | - | 420 | WP_000882666.1 | hypothetical protein | - |
| G6O58_RS20460 () | 4071894..4072184 | - | 291 | WP_001216625.1 | hypothetical protein | - |
| G6O58_RS20465 () | 4072505..4072795 | - | 291 | WP_000666098.1 | hypothetical protein | - |
| G6O58_RS20470 () | 4072795..4073684 | - | 890 | Protein_3985 | helix-turn-helix domain-containing protein | - |
| G6O58_RS20475 () | 4074048..4074710 | - | 663 | WP_000021003.1 | DNA N-6-adenine-methyltransferase | - |
| G6O58_RS20480 () | 4075079..4075630 | - | 552 | WP_000996134.1 | Tn3 family transposase TnpR_ISAli20 | Transposase |
| G6O58_RS20485 () | 4076217..4076564 | + | 348 | Protein_3988 | DUF72 domain-containing protein | - |
| G6O58_RS20490 () | 4076617..4077012 | + | 396 | WP_000252980.1 | MAPEG family protein | - |
| G6O58_RS20495 () | 4077053..4077796 | + | 744 | WP_000019601.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| G6O58_RS20500 () | 4077793..4078764 | + | 972 | WP_000564745.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| G6O58_RS20505 () | 4078929..4081220 | - | 2292 | WP_005153493.1 | trimethylamine N-oxide reductase TorZ | - |
| G6O58_RS20515 () | 4082521..4082625 | - | 105 | WP_052942460.1 | twin-arginine translocation signal domain-containing protein | - |
| G6O58_RS20520 () | 4082650..4083750 | - | 1101 | WP_001214330.1 | NapC/NirT family cytochrome c | - |
| G6O58_RS20525 () | 4084138..4084884 | - | 747 | WP_001185741.1 | copper homeostasis protein CutC | - |
| G6O58_RS20530 () | 4084898..4085464 | - | 567 | WP_005140097.1 | VOC family protein | - |
| G6O58_RS20535 () | 4085680..4087416 | + | 1737 | WP_001025298.1 | arginine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|