MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 71782 bp
Accession: NZ_CP047998 Location: 1..71782 Organism: Vibrio parahaemolyticus strain 20150710009 Replicon: plasmid pVPTJ15-2
Accession: NZ_CP047998 Location: 1..71782 Organism: Vibrio parahaemolyticus strain 20150710009 Replicon: plasmid pVPTJ15-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GSS20_RS24245 (GSS20_25555) | 677..1045 | - | 369 | WP_273692416.1 | hypothetical protein | - |
| GSS20_RS24250 (GSS20_25560) | 1642..1991 | - | 350 | Protein_2 | IS91 family transposase | - |
| GSS20_RS24255 (GSS20_25565) | 2103..2969 | + | 867 | WP_140391852.1 | hypothetical protein | - |
| GSS20_RS24260 (GSS20_25570) | 3164..3784 | + | 621 | WP_140391890.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| GSS20_RS24265 (GSS20_25575) | 3788..6784 | + | 2997 | WP_140391851.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| GSS20_RS24270 (GSS20_25580) | 6814..7389 | - | 576 | Protein_6 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| GSS20_RS24275 (GSS20_25585) | 7722..7976 | + | 255 | WP_005526636.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| GSS20_RS24280 (GSS20_25590) | 7969..8238 | + | 270 | WP_140220082.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| GSS20_RS24285 (GSS20_25595) | 8756..9025 | + | 270 | WP_140220080.1 | IS110 family transposase ISMlo3 | Transposase |
| GSS20_RS24290 (GSS20_25600) | 9055..9738 | - | 684 | WP_140220078.1 | IS6 family transposase ISSba18 | Transposase |
| GSS20_RS24295 (GSS20_25605) | 9808..10626 | + | 819 | Protein_11 | IS3 family transposase ISAs9 | Transposase |
| GSS20_RS24300 (GSS20_25610) | 10789..11223 | - | 435 | WP_140220074.1 | hypothetical protein | - |
| GSS20_RS24305 (GSS20_25615) | 11303..11515 | - | 213 | WP_140220072.1 | hypothetical protein | - |
| GSS20_RS24310 (GSS20_25620) | 11671..11871 | + | 201 | Protein_14 | recombinase family protein | - |
| GSS20_RS24315 (GSS20_25625) | 11881..13746 | - | 1866 | Protein_15 | Tn3 family transposase ISEc63 | Transposase |
| GSS20_RS24320 (GSS20_25630) | 13904..14452 | + | 549 | WP_140392098.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| GSS20_RS24325 (GSS20_25635) | 14594..18448 | + | 3855 | WP_180926510.1 | Ig-like domain-containing protein | - |
| GSS20_RS24330 (GSS20_25640) | 18556..19207 | + | 652 | Protein_18 | IS6 family transposase ISSba18 | Transposase |
| GSS20_RS24335 (GSS20_25645) | 19330..20340 | + | 1011 | WP_078231290.1 | LacI family DNA-binding transcriptional regulator | - |
| GSS20_RS24340 (GSS20_25650) | 20478..21953 | + | 1476 | WP_078231291.1 | Na+/H+ antiporter NhaC | - |
| GSS20_RS24345 (GSS20_25655) | 21966..23126 | + | 1161 | WP_078231292.1 | MalY/PatB family protein | - |
| GSS20_RS24350 (GSS20_25660) | 23411..24095 | - | 685 | Protein_22 | IS6 family transposase ISSba18 | Transposase |
| GSS20_RS24355 (GSS20_25665) | 24140..24289 | - | 150 | WP_176133574.1 | hypothetical protein | - |
| GSS20_RS24360 (GSS20_25670) | 24497..25516 | + | 1020 | WP_193291339.1 | IS110 family transposase ISSpe2 | Transposase |
| GSS20_RS24365 (GSS20_25675) | 25947..26549 | + | 603 | WP_176133577.1 | transglutaminase-like cysteine peptidase | - |
| GSS20_RS24370 | 26646..26744 | + | 99 | Protein_26 | IS5/IS1182 family transposase | - |
| GSS20_RS24375 (GSS20_25680) | 27455..27712 | + | 258 | WP_237305257.1 | transposase zinc-binding domain-containing protein | - |
| GSS20_RS24380 (GSS20_25685) | 27733..28414 | + | 682 | Protein_28 | IS6 family transposase ISSba18 | Transposase |
| GSS20_RS24385 (GSS20_25690) | 28442..28651 | + | 210 | Protein_29 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GSS20_RS24390 (GSS20_25695) | 29584..32967 | - | 3384 | WP_140220088.1 | Ig-like domain-containing protein | - |
| GSS20_RS24395 (GSS20_25700) | 32984..34084 | - | 1101 | WP_140220086.1 | Outer membrane protein A | VF |
| GSS20_RS24400 | 34360..34482 | + | 123 | Protein_32 | IS6 family transposase | - |
| GSS20_RS24405 (GSS20_25705) | 34810..35097 | - | 288 | WP_140220084.1 | NadS family protein | - |
| GSS20_RS24410 (GSS20_25710) | 35100..35351 | - | 252 | Protein_34 | hypothetical protein | - |
| GSS20_RS24415 (GSS20_25715) | 35856..37436 | + | 1581 | WP_140391888.1 | hypothetical protein | - |
| GSS20_RS24420 (GSS20_25720) | 37907..38206 | + | 300 | WP_140391887.1 | type II toxin-antitoxin system HigB family toxin | - |
| GSS20_RS24425 (GSS20_25725) | 38219..38587 | + | 369 | WP_140391886.1 | DNA-binding protein | - |
| GSS20_RS24430 (GSS20_25730) | 38599..38823 | + | 225 | WP_140391885.1 | hypothetical protein | - |
| GSS20_RS24435 (GSS20_25735) | 38854..39117 | + | 264 | WP_140391884.1 | hypothetical protein | - |
| GSS20_RS24440 (GSS20_25740) | 39124..39849 | - | 726 | WP_140391883.1 | GNAT family N-acetyltransferase | - |
| GSS20_RS24445 (GSS20_25745) | 39867..40451 | - | 585 | WP_140391882.1 | DUF2913 family protein | - |
| GSS20_RS24450 | 41049..42743 | + | 1695 | WP_219628325.1 | DUF3560 domain-containing protein | - |
| GSS20_RS24455 (GSS20_25760) | 43566..43778 | + | 213 | WP_140391881.1 | hypothetical protein | - |
| GSS20_RS24460 (GSS20_25765) | 43837..44265 | + | 429 | WP_140391880.1 | hypothetical protein | - |
| GSS20_RS24465 (GSS20_25770) | 44281..44727 | + | 447 | WP_140391879.1 | hypothetical protein | - |
| GSS20_RS24470 (GSS20_25775) | 44808..45080 | + | 273 | WP_140391878.1 | hypothetical protein | - |
| GSS20_RS24475 (GSS20_25780) | 45119..46144 | - | 1026 | WP_140391877.1 | type IV secretion system protein | - |
| GSS20_RS24480 (GSS20_25785) | 46144..46878 | - | 735 | WP_140391876.1 | Type IV secretion system protein virB5 | VF |
| GSS20_RS24485 (GSS20_25790) | 46890..47288 | - | 399 | WP_237305256.1 | hypothetical protein | - |
| GSS20_RS24490 (GSS20_25795) | 47414..48106 | - | 693 | WP_140391875.1 | StbB family protein | - |
| GSS20_RS24495 (GSS20_25800) | 48106..48633 | - | 528 | WP_140391874.1 | hypothetical protein | - |
| GSS20_RS24500 (GSS20_25805) | 48950..52081 | - | 3132 | WP_140391873.1 | relaxase | - |
| GSS20_RS24505 (GSS20_25810) | 52071..52421 | - | 351 | WP_140391872.1 | hypothetical protein | Relaxase |
| GSS20_RS24510 (GSS20_25815) | 52452..52868 | - | 417 | WP_237305255.1 | conjugal transfer protein | - |
| GSS20_RS24515 (GSS20_25820) | 52871..53422 | - | 552 | WP_140391871.1 | Type IV secretion system putative outer membrane lipoprotein/BS1330_II0058 | VF |
| GSS20_RS24520 (GSS20_25825) | 53479..55479 | - | 2001 | WP_140391870.1 | DNA topoisomerase III | - |
| GSS20_RS24525 (GSS20_25830) | 55595..55738 | - | 144 | WP_180926494.1 | hypothetical protein | - |
| GSS20_RS24530 (GSS20_25835) | 55759..57666 | - | 1908 | WP_140391869.1 | Protein VirD4 | VF |
| GSS20_RS24535 (GSS20_25840) | 57656..57934 | - | 279 | WP_140391868.1 | hypothetical protein | - |
| GSS20_RS24540 (GSS20_25845) | 57949..58977 | - | 1029 | WP_140391867.1 | Type IV secretion system protein VirB11 | VF |
| GSS20_RS24545 (GSS20_25850) | 58978..60153 | - | 1176 | WP_140391866.1 | Type IV secretion system protein virB10 | VF |
| GSS20_RS24550 (GSS20_25855) | 60156..61037 | - | 882 | WP_140391865.1 | Type IV secretion system protein virB9 | VF |
| GSS20_RS24555 (GSS20_25860) | 61050..61739 | - | 690 | WP_140391864.1 | Type IV secretion system protein virB8 | VF |
| GSS20_RS24560 | 61726..61848 | - | 123 | WP_256896387.1 | hypothetical protein | - |
| GSS20_RS24565 (GSS20_25865) | 61852..64290 | - | 2439 | WP_140391863.1 | Type IV secretion system protein virB4 | VF |
| GSS20_RS24570 (GSS20_25870) | 64294..64599 | - | 306 | WP_140391862.1 | Type IV secretion system protein virB3 | VF |
| GSS20_RS24575 (GSS20_25875) | 64651..64950 | - | 300 | WP_140391861.1 | Type IV secretion system protein PtlA | VF |
| GSS20_RS24580 (GSS20_25880) | 65077..65262 | - | 186 | WP_140391860.1 | TraY domain-containing protein | - |
| GSS20_RS24585 (GSS20_25885) | 65284..65778 | - | 495 | WP_140391859.1 | hypothetical protein | - |
| GSS20_RS24590 (GSS20_25890) | 65915..66061 | + | 147 | WP_180926493.1 | hypothetical protein | - |
| GSS20_RS24595 (GSS20_25895) | 66176..66808 | + | 633 | WP_140391858.1 | IS21 family transposase ISVapa2 | Transposase |
| GSS20_RS24600 (GSS20_25900) | 67236..68135 | + | 900 | WP_140391857.1 | hypothetical protein | - |
| GSS20_RS24605 (GSS20_25905) | 68868..69332 | - | 465 | WP_023625101.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| GSS20_RS24610 (GSS20_25910) | 69332..69514 | - | 183 | WP_140391856.1 | hypothetical protein | - |
| GSS20_RS24615 (GSS20_25915) | 69802..70341 | + | 540 | WP_023625103.1 | ParA family protein | - |
| GSS20_RS24620 (GSS20_25920) | 70341..70670 | + | 330 | WP_140303232.1 | hypothetical protein | - |
| GSS20_RS24625 (GSS20_25925) | 71019..71213 | + | 195 | WP_140391855.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|