MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 56653 bp
Accession: NZ_CP047985 Location: 2290042..2346694 Organism: Vibrio parahaemolyticus strain HZ-52 Replicon: chromosome
Accession: NZ_CP047985 Location: 2290042..2346694 Organism: Vibrio parahaemolyticus strain HZ-52 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GSS61_RS10785 (GSS61_11295) | 2285075..2285416 | - | 342 | WP_002156791.1 | hypothetical protein | - |
| GSS61_RS10790 (GSS61_11300) | 2285416..2285913 | - | 498 | WP_193239123.1 | DNA repair protein RadC | - |
| GSS61_RS10795 (GSS61_11305) | 2285996..2287651 | - | 1656 | WP_193239122.1 | VWA domain-containing protein | - |
| GSS61_RS10800 (GSS61_11310) | 2287721..2288161 | - | 441 | WP_032469941.1 | hypothetical protein | - |
| GSS61_RS10805 (GSS61_11315) | 2288223..2289176 | - | 954 | WP_000027441.1 | DUF3150 domain-containing protein | - |
| GSS61_RS10810 (GSS61_11320) | 2289275..2290042 | - | 768 | WP_086597830.1 | hypothetical protein | - |
| GSS61_RS10815 (GSS61_11325) | 2290042..2291001 | - | 960 | WP_193239121.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| GSS61_RS10820 (GSS61_11330) | 2291211..2292227 | - | 1017 | WP_193239120.1 | YqaJ viral recombinase family protein | - |
| GSS61_RS10825 | 2292288..2292431 | - | 144 | WP_000167275.1 | hypothetical protein | - |
| GSS61_RS10830 (GSS61_11335) | 2292514..2293332 | - | 819 | WP_000414662.1 | phage recombination protein Bet | - |
| GSS61_RS10835 (GSS61_11340) | 2293412..2293831 | - | 420 | WP_000795984.1 | single-stranded DNA-binding protein | - |
| GSS61_RS10840 (GSS61_11345) | 2293847..2294173 | - | 327 | WP_193239119.1 | plasmid-related protein | - |
| GSS61_RS10845 (GSS61_11350) | 2294541..2295143 | + | 603 | WP_193234380.1 | hypothetical protein | - |
| GSS61_RS10850 (GSS61_11355) | 2295299..2296072 | + | 774 | WP_193234381.1 | hypothetical protein | - |
| GSS61_RS10855 (GSS61_11360) | 2296226..2299918 | - | 3693 | WP_193234382.1 | conjugal transfer protein TraN | - |
| GSS61_RS10860 (GSS61_11365) | 2299921..2300949 | - | 1029 | WP_193234383.1 | TraU family protein | - |
| GSS61_RS10865 (GSS61_11370) | 2300933..2302057 | - | 1125 | WP_193234384.1 | TrbC family F-type conjugative pilus assembly protein | - |
| GSS61_RS10870 (GSS61_11375) | 2302068..2302580 | - | 513 | WP_180949878.1 | S26 family signal peptidase | - |
| GSS61_RS10875 (GSS61_11380) | 2302564..2302911 | - | 348 | WP_193234385.1 | plasmid-related protein | - |
| GSS61_RS10880 (GSS61_11385) | 2302904..2305303 | - | 2400 | WP_193239118.1 | type IV secretion system protein TraC | - |
| GSS61_RS10885 (GSS61_11390) | 2305303..2305995 | - | 693 | WP_193234387.1 | DsbC family protein | - |
| GSS61_RS10890 (GSS61_11395) | 2306140..2307585 | - | 1446 | WP_193239117.1 | Regulatory protein LuxO | VF |
| GSS61_RS10895 (GSS61_11400) | 2307588..2309120 | - | 1533 | WP_126758278.1 | phospholipase D-like domain-containing protein | - |
| GSS61_RS10900 (GSS61_11405) | 2309133..2310239 | - | 1107 | WP_193239116.1 | hypothetical protein | - |
| GSS61_RS10905 (GSS61_11410) | 2310236..2312965 | - | 2730 | WP_193239115.1 | DEAD/DEAH box helicase | - |
| GSS61_RS10910 (GSS61_11415) | 2313781..2314047 | + | 267 | WP_000212004.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| GSS61_RS10915 (GSS61_11420) | 2314038..2314544 | + | 507 | WP_023584043.1 | GNAT family N-acetyltransferase | Toxin Detail |
| GSS61_RS10920 (GSS61_11425) | 2314585..2314971 | - | 387 | WP_023584042.1 | TraA family conjugative transfer protein | - |
| GSS61_RS10925 (GSS61_11430) | 2314968..2315540 | - | 573 | WP_001944091.1 | type IV conjugative transfer system lipoprotein TraV | - |
| GSS61_RS10930 (GSS61_11435) | 2315615..2316904 | - | 1290 | WP_193239114.1 | TraB/VirB10 family protein | - |
| GSS61_RS10935 (GSS61_11440) | 2316907..2317803 | - | 897 | WP_193234406.1 | type-F conjugative transfer system secretin TraK | - |
| GSS61_RS10940 (GSS61_11445) | 2317787..2318413 | - | 627 | WP_000667170.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| GSS61_RS10945 (GSS61_11450) | 2318410..2318691 | - | 282 | WP_000433889.1 | type IV conjugative transfer system protein TraL | - |
| GSS61_RS10950 (GSS61_11460) | 2318980..2319567 | + | 588 | WP_193234389.1 | plasmid-related protein | - |
| GSS61_RS10955 (GSS61_11465) | 2319595..2320230 | - | 636 | WP_193234390.1 | DUF4400 domain-containing protein | - |
| GSS61_RS10960 (GSS61_11470) | 2320217..2320777 | - | 561 | WP_103201387.1 | conjugative transfer protein | - |
| GSS61_RS10965 (GSS61_11475) | 2320787..2322606 | - | 1820 | Protein_2142 | conjugative transfer system coupling protein TraD | - |
| GSS61_RS10970 (GSS61_11480) | 2322654..2324804 | - | 2151 | WP_193234392.1 | MobH family relaxase | - |
| GSS61_RS10975 (GSS61_11485) | 2324922..2325635 | - | 714 | WP_193234393.1 | hypothetical protein | - |
| GSS61_RS10980 (GSS61_11490) | 2325636..2326826 | - | 1191 | WP_193234394.1 | nucleotidyltransferase | - |
| GSS61_RS10985 (GSS61_11495) | 2326819..2327973 | - | 1155 | WP_193234395.1 | SAVED domain-containing protein | - |
| GSS61_RS10990 (GSS61_11500) | 2327983..2328351 | - | 369 | WP_193234396.1 | metal-dependent hydrolase | - |
| GSS61_RS10995 | 2328353..2328526 | - | 174 | WP_000224748.1 | hypothetical protein | - |
| GSS61_RS11000 (GSS61_11505) | 2328657..2329208 | - | 552 | WP_000811851.1 | helix-turn-helix domain-containing protein | - |
| GSS61_RS11005 (GSS61_11510) | 2329231..2330316 | - | 1086 | WP_193234397.1 | ATP-binding protein | - |
| GSS61_RS11010 (GSS61_11515) | 2330339..2333356 | - | 3018 | WP_193234398.1 | type I restriction endonuclease subunit R | - |
| GSS61_RS11015 (GSS61_11520) | 2333371..2334534 | - | 1164 | WP_193234399.1 | DUF4268 domain-containing protein | - |
| GSS61_RS11020 (GSS61_11525) | 2334544..2335854 | - | 1311 | WP_193234400.1 | restriction endonuclease subunit S | - |
| GSS61_RS11025 (GSS61_11530) | 2335854..2338283 | - | 2430 | WP_193234401.1 | class I SAM-dependent DNA methyltransferase | - |
| GSS61_RS11030 (GSS61_11535) | 2338397..2339320 | - | 924 | WP_193234402.1 | WYL domain-containing protein | - |
| GSS61_RS11035 (GSS61_11540) | 2339638..2339883 | - | 246 | WP_273693011.1 | hypothetical protein | - |
| GSS61_RS11040 | 2339830..2339961 | + | 132 | WP_262593537.1 | hypothetical protein | - |
| GSS61_RS11045 (GSS61_11545) | 2340011..2340919 | - | 909 | WP_193234403.1 | 3'-5' exonuclease | - |
| GSS61_RS11050 (GSS61_11550) | 2341561..2342010 | + | 450 | WP_007105028.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| GSS61_RS11055 (GSS61_11555) | 2342018..2343286 | + | 1269 | WP_193234404.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| GSS61_RS11060 (GSS61_11560) | 2343297..2343740 | - | 444 | WP_008305549.1 | conjugative transfer protein MobI(A/C) | - |
| GSS61_RS11065 (GSS61_11565) | 2344205..2345179 | + | 975 | WP_193234405.1 | ParM/StbA family protein | - |
| GSS61_RS11070 (GSS61_11570) | 2345182..2345451 | + | 270 | WP_039847056.1 | hypothetical protein | - |
| GSS61_RS11075 (GSS61_11575) | 2345453..2346694 | + | 1242 | WP_025441390.1 | Prophage integrase IntS ; Integrase | Integrase |
| GSS61_RS11080 (GSS61_11580) | 2346963..2347175 | + | 213 | WP_040132767.1 | hypothetical protein | - |
| GSS61_RS11085 (GSS61_11585) | 2347227..2347421 | - | 195 | WP_039995236.1 | DNA-binding protein | - |
| GSS61_RS11090 (GSS61_11590) | 2348074..2348529 | - | 456 | WP_140274122.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| GSS61_RS11095 (GSS61_11595) | 2348595..2348993 | - | 399 | WP_005456107.1 | DNA polymerase III subunit psi | - |
| GSS61_RS11100 (GSS61_11600) | 2349045..2349494 | + | 450 | WP_193239112.1 | hypothetical protein | - |
| GSS61_RS11105 (GSS61_11605) | 2349562..2350065 | - | 504 | WP_005494076.1 | N-acetyltransferase | - |
| GSS61_RS11110 (GSS61_11610) | 2350049..2350576 | - | 528 | WP_193239133.1 | SCP2 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|