MGE detailed information
MGE type: Conjugative plasmid MGE length: 75321 bp
Accession: NZ_CP047471 Location: 1..75321 Organism: Escherichia coli strain DY612 Replicon: plasmid pDY612-2
Accession: NZ_CP047471 Location: 1..75321 Organism: Escherichia coli strain DY612 Replicon: plasmid pDY612-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTK51_RS22610 (1313) | 1313..4549 | + | 3237 | WP_011407157.1 | Multifunctional conjugation protein TraI | Relaxase |
| GTK51_RS22615 (4549) | 4549..5175 | + | 627 | WP_000434930.1 | hypothetical protein | - |
| GTK51_RS22620 (5349) | 5349..5882 | - | 534 | WP_000731968.1 | Phospholipase D | VF |
| GTK51_RS22625 (5882) | 5882..6877 | - | 996 | WP_000128596.1 | Type IV secretion system protein VirB11 | VF |
| GTK51_RS22630 (6919) | 6919..8079 | - | 1161 | WP_000101711.1 | Protein virB10 | VF |
| GTK51_RS22635 (8079) | 8079..8963 | - | 885 | WP_000735067.1 | Type IV secretion system protein virB9 | VF |
| GTK51_RS22640 (8974) | 8974..9672 | - | 699 | WP_000646594.1 | Type IV secretion system protein virB8 | VF |
| GTK51_RS22645 (9662) | 9662..9790 | - | 129 | WP_071882546.1 | conjugal transfer protein TraN | - |
| GTK51_RS22650 (9891) | 9891..10931 | - | 1041 | WP_000886022.1 | type IV secretion system protein | - |
| GTK51_RS22655 (10947) | 10947..11174 | - | 228 | WP_000734973.1 | IncN-type entry exclusion lipoprotein EexN | - |
| GTK51_RS22660 (11182) | 11182..11895 | - | 714 | WP_000749362.1 | Type IV secretion system protein virB5 | VF |
| GTK51_RS22665 (11913) | 11913..14381 | - | 2469 | WP_225303560.1 | Type IV secretion system protein virB4 | VF |
| GTK51_RS22670 (14513) | 14513..14830 | - | 318 | WP_000496058.1 | hypothetical protein | VF |
| GTK51_RS22675 (14880) | 14880..15173 | - | 294 | WP_000209137.1 | hypothetical protein | - |
| GTK51_RS22680 (15183) | 15183..15464 | - | 282 | WP_000440698.1 | transcriptional repressor KorA | - |
| GTK51_RS22685 (15473) | 15473..16207 | - | 735 | WP_000033783.1 | Type IV secretion system protein virB1 | VF |
| GTK51_RS22690 (16316) | 16316..16621 | + | 306 | WP_000960954.1 | H-NS family nucleoid-associated regulatory protein | - |
| GTK51_RS22695 (16637) | 16637..17014 | + | 378 | WP_000504251.1 | hypothetical protein | - |
| GTK51_RS22700 (16977) | 16977..17291 | + | 315 | WP_000734776.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| GTK51_RS22705 (17327) | 17327..17638 | + | 312 | WP_001452736.1 | hypothetical protein | - |
| GTK51_RS22710 (17694) | 17694..18335 | + | 642 | WP_001694850.1 | restriction endonuclease | - |
| GTK51_RS22715 (18340) | 18340..18537 | + | 198 | WP_000844102.1 | hypothetical protein | - |
| GTK51_RS22720 (18738) | 18738..19598 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| GTK51_RS22725 (19841) | 19841..20545 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| GTK51_RS22730 (20609) | 20609..21538 | - | 930 | Protein_25 | IS21 family transposase ISEc57 | Transposase |
| GTK51_RS22735 (21627) | 21627..21788 | - | 162 | Protein_26 | IS91 family transposase | - |
| GTK51_RS22740 (21900) | 21900..22205 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| GTK51_RS22745 (22233) | 22233..22577 | - | 345 | Protein_28 | CmlA/FloR family chloramphenicol efflux MFS transporter | - |
| GTK51_RS22750 (22647) | 22647..23351 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| GTK51_RS22755 (23404) | 23404..23547 | - | 144 | Protein_30 | IS6 family transposase IS15 | Transposase |
| GTK51_RS22760 (24184) | 24184..25233 | + | 1050 | WP_121526155.1 | Ribosomal RNA large subunit methyltransferase Cfr | ARG |
| GTK51_RS22765 (25739) | 25739..26443 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| GTK51_RS22770 (26496) | 26496..27074 | - | 579 | Protein_33 | aminoglycoside adenylyltransferase family protein | - |
| GTK51_RS22775 (27205) | 27205..27678 | - | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| GTK51_RS22780 (27836) | 27836..28849 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| GTK51_RS22785 (29241) | 29241..29330 | + | 90 | Protein_36 | Tn3 family transposase ISPsy42 | Transposase |
| GTK51_RS22790 (29394) | 29394..30098 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| GTK51_RS22795 (30104) | 30104..30244 | + | 141 | WP_001044210.1 | hypothetical protein | - |
| GTK51_RS22800 (30730) | 30730..31467 | + | 738 | WP_001446887.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| GTK51_RS22805 (31464) | 31464..31688 | + | 225 | WP_000743213.1 | hypothetical protein | - |
| GTK51_RS22810 (31899) | 31899..32636 | + | 738 | Protein_41 | IS91 family transposase ISPps1 | Transposase |
| GTK51_RS22815 (32616) | 32616..33005 | - | 390 | Protein_42 | transposase zinc-binding domain-containing protein | - |
| GTK51_RS22820 (33117) | 33117..33422 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| GTK51_RS22825 (33450) | 33450..34664 | - | 1215 | WP_063122217.1 | Inner membrane transport protein YdhC | ARG |
| GTK51_RS22830 (34881) | 34881..35765 | - | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| GTK51_RS22835 (35796) | 35796..36626 | - | 831 | Protein_46 | IS91 family transposase ISVsa3 | Transposase |
| GTK51_RS22840 (36690) | 36690..37394 | + | 705 | WP_001067784.1 | IS6 family transposase IS1006 | Transposase |
| GTK51_RS22845 (37479) | 37479..37955 | - | 477 | WP_223171565.1 | hypothetical protein | - |
| GTK51_RS22850 (37889) | 37889..40840 | - | 2952 | WP_278182355.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| GTK51_RS22855 (40843) | 40843..41403 | - | 561 | WP_000147567.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| GTK51_RS22860 (41494) | 41494..42198 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| GTK51_RS22865 (43308) | 43308..43556 | + | 249 | Protein_52 | IS1380 family transposase ISEcp1 | Transposase |
| GTK51_RS22870 (43559) | 43559..43645 | + | 87 | Protein_53 | hypothetical protein | - |
| GTK51_RS22875 (43676) | 43676..44017 | + | 342 | WP_004202492.1 | Multiple antibiotic resistance protein MarA | VF |
| GTK51_RS22880 (44035) | 44035..44283 | - | 249 | WP_065809026.1 | IS6 family transposase IS15DII | Transposase |
| GTK51_RS22885 (44575) | 44575..44784 | - | 210 | Protein_56 | IS6 family transposase IS15DII | Transposase |
| GTK51_RS22890 (44850) | 44850..46364 | + | 1515 | Protein_57 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| GTK51_RS22895 (46505) | 46505..47296 | - | 792 | WP_050394548.1 | hypothetical protein | - |
| - (47952) | 47952..47984 | - | 33 | NuclAT_0 | - | - |
| - (47952) | 47952..47984 | - | 33 | NuclAT_0 | - | - |
| - (47952) | 47952..47984 | - | 33 | NuclAT_0 | - | - |
| - (47952) | 47952..47984 | - | 33 | NuclAT_0 | - | - |
| GTK51_RS22900 (48267) | 48267..48350 | + | 84 | WP_000565612.1 | damage-inducible type I toxin DinQ | - |
| GTK51_RS22905 (48505) | 48505..49149 | - | 645 | WP_001376796.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| GTK51_RS22910 (49442) | 49442..50062 | + | 621 | WP_001376797.1 | ParA family protein | - |
| GTK51_RS22915 (50114) | 50114..50344 | + | 231 | WP_000051066.1 | plasmid partition protein ParG | - |
| GTK51_RS22920 (50360) | 50360..50671 | + | 312 | WP_000358386.1 | hypothetical protein | - |
| GTK51_RS22925 (51056) | 51056..51229 | + | 174 | WP_215249975.1 | aminopeptidase | - |
| GTK51_RS22930 (51318) | 51318..51605 | + | 288 | WP_227636918.1 | YcxB family protein | - |
| GTK51_RS22935 (51623) | 51623..52483 | + | 861 | WP_063122221.1 | hypothetical protein | - |
| GTK51_RS22940 (52504) | 52504..52860 | - | 357 | WP_001714234.1 | DNA distortion polypeptide 3 | - |
| GTK51_RS22945 (52997) | 52997..53443 | - | 447 | WP_001074384.1 | hypothetical protein | - |
| GTK51_RS22950 (53447) | 53447..54289 | - | 843 | WP_000435064.1 | replication initiation protein | - |
| GTK51_RS22955 (54310) | 54310..55149 | - | 840 | WP_001352874.1 | replication initiation protein | - |
| GTK51_RS22960 (56384) | 56384..56635 | + | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| GTK51_RS22965 (56625) | 56625..56906 | + | 282 | WP_000220561.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GTK51_RS22970 (57256) | 57256..57771 | + | 516 | WP_001025387.1 | J domain-containing protein | - |
| GTK51_RS22975 (57845) | 57845..58393 | + | 549 | WP_001178641.1 | hypothetical protein | - |
| GTK51_RS22980 (58402) | 58402..58671 | + | 270 | WP_001006718.1 | hypothetical protein | - |
| GTK51_RS22985 (58661) | 58661..58903 | + | 243 | WP_000008708.1 | hypothetical protein | - |
| GTK51_RS22990 (59036) | 59036..59740 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| GTK51_RS22995 (59780) | 59780..60307 | + | 528 | WP_260567646.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| GTK51_RS23000 (62214) | 62214..62933 | - | 720 | WP_000359513.1 | replication initiation protein | - |
| GTK51_RS23005 (63493) | 63493..63834 | + | 342 | WP_000057569.1 | antirestriction protein ArdAB regulator ArdK | - |
| GTK51_RS23010 (63849) | 63849..64640 | - | 792 | WP_001452808.1 | SprT-like domain-containing protein | - |
| GTK51_RS23015 (64791) | 64791..66056 | - | 1266 | WP_000457702.1 | translesion error-prone DNA polymerase V subunit MucB | - |
| GTK51_RS23020 (66044) | 66044..66484 | - | 441 | WP_000861760.1 | translesion error-prone DNA polymerase V autoproteolytic subunit MucA | - |
| GTK51_RS23025 (66897) | 66897..67322 | + | 426 | WP_000447669.1 | antirestriction protein ArdB | - |
| GTK51_RS23030 (67380) | 67380..67784 | + | 405 | WP_000881514.1 | antirestriction protein ArdAB regulator ArdR | - |
| GTK51_RS23035 (67794) | 67794..68033 | + | 240 | WP_015059329.1 | hypothetical protein | - |
| GTK51_RS23040 (68917) | 68917..69213 | + | 297 | WP_000545925.1 | protein CcgD | - |
| GTK51_RS23045 (69346) | 69346..69630 | + | 285 | WP_000274934.1 | protein CcgC | - |
| GTK51_RS23050 (70128) | 70128..70637 | + | 510 | WP_000129958.1 | antirestriction protein ArdA | - |
| GTK51_RS23055 (71469) | 71469..71648 | + | 180 | WP_000214483.1 | protein CcgAI | - |
| GTK51_RS23060 (71703) | 71703..72023 | + | 321 | WP_000211833.1 | protein CcgAII | - |
| GTK51_RS23065 (72134) | 72134..72478 | - | 345 | WP_015059326.1 | hypothetical protein | - |
| GTK51_RS23070 (72660) | 72660..73028 | - | 369 | WP_000414913.1 | plasmid stabilization protein StbC | - |
| GTK51_RS23075 (73030) | 73030..73746 | - | 717 | WP_000861577.1 | StbB family protein | - |
| GTK51_RS23080 (73755) | 73755..74174 | - | 420 | WP_000802909.1 | plasmid stabilization protein StbA | - |
| GTK51_RS23085 (74813) | 74813..75103 | + | 291 | WP_000706094.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|