MGE detailed information
MGE type: Genomic_island MGE length: 40952 bp
Accession: NZ_CP047301 Location: 2173590..2214541 Organism: Vibrio cholerae O1 biovar El Tor strain DRC-193A Replicon: chromosome
Accession: NZ_CP047301 Location: 2173590..2214541 Organism: Vibrio cholerae O1 biovar El Tor strain DRC-193A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTF75_RS09800 () | 2168855..2173417 | - | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| GTF75_RS09805 () | 2173590..2174237 | + | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| GTF75_RS09810 () | 2174240..2175148 | - | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| GTF75_RS09815 () | 2175157..2175630 | - | 474 | WP_000287237.1 | RDD family protein | - |
| GTF75_RS09820 () | 2175646..2176416 | - | 771 | WP_001880633.1 | accessory colonization factor AcfC | - |
| GTF75_RS09825 () | 2176422..2178302 | - | 1881 | WP_000672505.1 | methyl-accepting chemotaxis protein AcfB | - |
| GTF75_RS09830 () | 2178309..2179070 | - | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| GTF75_RS09835 () | 2179070..2179900 | - | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| GTF75_RS09840 () | 2180107..2181123 | - | 1017 | WP_001269573.1 | colonization factor TcpF | - |
| GTF75_RS09845 () | 2181133..2182155 | - | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| GTF75_RS09850 () | 2182130..2183641 | - | 1512 | WP_000020697.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| GTF75_RS09855 () | 2183631..2184089 | - | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| GTF75_RS09860 () | 2184105..2184941 | - | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| GTF75_RS09865 () | 2184929..2185384 | - | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| GTF75_RS09870 () | 2185377..2186846 | - | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| GTF75_RS09875 () | 2186849..2187301 | - | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| GTF75_RS09880 () | 2187301..2188593 | - | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| GTF75_RS09885 () | 2188673..2189347 | - | 675 | WP_001176374.1 | toxin-coregulated pilus major pilin TcpA | - |
| GTF75_RS09890 () | 2189891..2190301 | - | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| GTF75_RS09895 () | 2190286..2190951 | - | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| GTF75_RS09900 () | 2191392..2193254 | + | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| GTF75_RS09905 () | 2193530..2194024 | - | 495 | WP_000218964.1 | thiol peroxidase | - |
| GTF75_RS09910 () | 2194134..2195072 | - | 939 | WP_001232137.1 | hypothetical protein | - |
| GTF75_RS09915 () | 2195069..2199670 | - | 4602 | WP_000482254.1 | membrane protein | - |
| GTF75_RS09920 () | 2199783..2202824 | - | 3042 | WP_001880619.1 | fibronectin type III domain-containing protein | - |
| GTF75_RS09925 () | 2203004..2204524 | + | 1521 | WP_000640055.1 | aldehyde dehydrogenase | - |
| GTF75_RS09930 () | 2204866..2205546 | + | 681 | Protein_1927 | IS5 family transposase | - |
| GTF75_RS09935 () | 2205572..2206549 | - | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| GTF75_RS09940 () | 2207153..2208514 | + | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| GTF75_RS09945 () | 2208511..2208978 | + | 468 | WP_000804849.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| GTF75_RS09950 () | 2209406..2209984 | + | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| GTF75_RS09955 () | 2209988..2212924 | + | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| GTF75_RS09960 () | 2212994..2213698 | + | 705 | WP_001880605.1 | NERD domain-containing protein | - |
| GTF75_RS09965 () | 2214032..2214541 | - | 510 | WP_001077909.1 | hypothetical protein | - |
| GTF75_RS09970 () | 2214739..2216418 | - | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| GTF75_RS09975 () | 2216641..2217324 | + | 684 | WP_000841479.1 | MFS transporter | - |
| GTF75_RS09980 () | 2217392..2219008 | - | 1617 | WP_000620446.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|