MGE detailed information
MGE type: Genomic_island MGE length: 23080 bp
Accession: NZ_CP047277 Location: 609925..633004 Organism: Escherichia coli strain N18-04097 Replicon: chromosome
Accession: NZ_CP047277 Location: 609925..633004 Organism: Escherichia coli strain N18-04097 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F3052_RS02905 () | 604926..605360 | - | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
| F3052_RS02910 () | 605378..606256 | - | 879 | WP_001295548.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| F3052_RS02915 () | 606246..607025 | - | 780 | WP_000406209.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| F3052_RS02920 () | 607036..607509 | - | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| F3052_RS02925 () | 607532..608812 | - | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| F3052_RS02930 () | 609061..609870 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| F3052_RS02935 () | 609925..610389 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| F3052_RS02940 () | 610389..610724 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| F3052_RS02945 () | 610873..612444 | - | 1572 | WP_097725156.1 | galactarate dehydratase | - |
| F3052_RS02950 () | 612819..614153 | + | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| F3052_RS02955 () | 614169..614939 | + | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| F3052_RS02960 () | 614969..615859 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| F3052_RS02965 () | 615956..617101 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| F3052_RS02975 () | 618011..619198 | - | 1188 | WP_183311536.1 | YhaC family protein | - |
| F3052_RS02980 () | 619220..619759 | - | 540 | WP_000675733.1 | hypothetical protein | - |
| F3052_RS02985 () | 620015..620359 | - | 345 | WP_000145840.1 | transcriptional activator TdcR | - |
| F3052_RS02990 () | 620548..621486 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| F3052_RS02995 () | 621585..622574 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| F3052_RS03000 () | 622596..623927 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| F3052_RS03005 () | 623953..625161 | + | 1209 | WP_001295545.1 | propionate kinase | - |
| F3052_RS03010 () | 625195..627489 | + | 2295 | WP_000861734.1 | 2-ketobutyrate formate-lyase/pyruvate formate-lyase | - |
| F3052_RS03015 () | 627503..627892 | + | 390 | WP_000719990.1 | enamine/imine deaminase | - |
| F3052_RS03020 () | 627964..629328 | + | 1365 | WP_000622126.1 | L-serine ammonia-lyase | - |
| F3052_RS03025 () | 629603..630427 | + | 825 | Protein_592 | hypothetical protein | - |
| F3052_RS03030 () | 630486..631183 | + | 698 | Protein_593 | IS1 family transposase IS1A | Transposase |
| F3052_RS03035 () | 631201..631863 | + | 663 | Protein_594 | hypothetical protein | - |
| F3052_RS03040 () | 631906..632106 | - | 201 | WP_000350095.1 | cell surface composition regulator GlgS | - |
| F3052_RS03045 () | 632375..633004 | + | 630 | WP_000599926.1 | DUF1449 family protein | - |
| F3052_RS03050 () | 633031..634692 | + | 1662 | WP_001311137.1 | flotillin family protein | - |
| - () | 634890..635032 | - | 143 | NuclAT_0 | - | - |
| - () | 634890..635032 | - | 143 | NuclAT_0 | - | - |
| - () | 634890..635032 | - | 143 | NuclAT_0 | - | - |
| - () | 634890..635032 | - | 143 | NuclAT_0 | - | - |
| - () | 634890..635032 | - | 143 | NuclAT_3 | - | - |
| - () | 634890..635032 | - | 143 | NuclAT_3 | - | - |
| - () | 634890..635032 | - | 143 | NuclAT_3 | - | - |
| - () | 634890..635032 | - | 143 | NuclAT_3 | - | - |
| F3052_RS03055 () | 634933..634992 | + | 60 | WP_001387081.1 | type I toxin-antitoxin system Ibs family toxin | - |
| - () | 635266..635407 | - | 142 | NuclAT_1 | - | - |
| - () | 635266..635407 | - | 142 | NuclAT_1 | - | - |
| - () | 635266..635407 | - | 142 | NuclAT_1 | - | - |
| - () | 635266..635407 | - | 142 | NuclAT_1 | - | - |
| - () | 635266..635407 | - | 142 | NuclAT_2 | - | - |
| - () | 635266..635407 | - | 142 | NuclAT_2 | - | - |
| - () | 635266..635407 | - | 142 | NuclAT_2 | - | - |
| - () | 635266..635407 | - | 142 | NuclAT_2 | - | - |
| F3052_RS03060 () | 635308..635367 | + | 60 | WP_010723221.1 | type I toxin-antitoxin system toxin IbsE | - |
| F3052_RS03065 () | 635487..636920 | - | 1434 | WP_000869178.1 | bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|