MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 66704 bp
Accession: NZ_CP047221 Location: 1..66704 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: plasmid unnamed2
Accession: NZ_CP047221 Location: 1..66704 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GS397_RS27065 () | 974..1324 | + | 351 | WP_022684421.1 | hypothetical protein | - |
| GS397_RS27070 () | 1385..2780 | + | 1396 | Protein_2 | aldehyde dehydrogenase | - |
| GS397_RS27075 () | 2820..3503 | + | 684 | WP_022684419.1 | nuclear transport factor 2 family protein | - |
| GS397_RS27080 () | 3552..3995 | + | 444 | WP_022684418.1 | acyl-CoA thioesterase | - |
| GS397_RS27085 () | 4031..4879 | + | 849 | WP_159368313.1 | 3-keto-5-aminohexanoate cleavage protein | - |
| GS397_RS27090 () | 4936..6168 | + | 1233 | WP_022684416.1 | Tm-1-like ATP-binding domain-containing protein | - |
| GS397_RS27095 () | 6165..6638 | + | 474 | WP_006961057.1 | biotin carboxyl carrier domain-containing protein | - |
| GS397_RS27100 () | 6635..7972 | + | 1338 | WP_159368308.1 | ATP-grasp domain-containing protein | - |
| GS397_RS27105 () | 7965..9449 | + | 1485 | WP_006961055.1 | biotin carboxyl carrier protein | - |
| GS397_RS27110 () | 9449..10321 | + | 873 | WP_006961053.1 | HAD hydrolase-like protein | - |
| GS397_RS27115 () | 10731..11651 | - | 921 | Protein_11 | Tn3 family transposase TnpA_ISMex22 | Transposase |
| GS397_RS27120 () | 11712..12578 | - | 867 | WP_006961816.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| GS397_RS27125 () | 12721..15630 | - | 2910 | WP_006961814.1 | Tn3 family transposase TnpA_ISYps3 | Transposase |
| GS397_RS27130 () | 16358..16759 | + | 402 | WP_019053950.1 | helix-turn-helix domain-containing protein | - |
| GS397_RS27135 () | 16947..17219 | + | 273 | Protein_15 | Flp pilus assembly complex ATPase component TadA | - |
| GS397_RS27140 () | 17262..18026 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| GS397_RS27145 () | 18128..19399 | - | 1272 | WP_159368309.1 | cytochrome P450 | - |
| GS397_RS27150 () | 19474..19791 | - | 318 | WP_119594020.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| GS397_RS27155 () | 20138..20902 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| GS397_RS27160 () | 20966..21313 | + | 348 | Protein_20 | IS6-like element IS6100 family transposase | - |
| GS397_RS27165 () | 21569..21943 | + | 375 | WP_013041565.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GS397_RS27170 () | 21940..22266 | + | 327 | WP_006964370.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| GS397_RS27175 () | 22266..22508 | + | 243 | WP_006964372.1 | hypothetical protein | - |
| GS397_RS27180 () | 22501..22800 | + | 300 | WP_006964373.1 | hypothetical protein | - |
| GS397_RS27185 () | 22821..23933 | - | 1113 | WP_030092736.1 | hypothetical protein | VF |
| GS397_RS27190 () | 23936..25651 | - | 1716 | WP_030092735.1 | P-type conjugative transfer protein TrbL | - |
| GS397_RS27195 () | 25662..25904 | - | 243 | WP_019053956.1 | EexN family lipoprotein | - |
| GS397_RS27200 () | 25914..26669 | - | 756 | WP_022675885.1 | P-type conjugative transfer protein TrbJ | - |
| GS397_RS27205 () | 26695..28044 | - | 1350 | WP_019053954.1 | Type IV secretion system protein virB10 | VF |
| GS397_RS27210 () | 28075..28848 | - | 774 | WP_019053953.1 | SPOR domain-containing protein | - |
| GS397_RS27215 () | 28851..29834 | - | 984 | WP_006964392.1 | P-type conjugative transfer protein TrbG | - |
| GS397_RS27220 () | 29852..30571 | - | 720 | WP_006964394.1 | IncP-type conjugative transfer protein TrbF | - |
| GS397_RS27225 () | 30558..33137 | - | 2580 | WP_006964396.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| GS397_RS27230 () | 33134..33466 | - | 333 | WP_026149854.1 | conjugal transfer protein TrbD | - |
| GS397_RS27235 () | 33485..33865 | - | 381 | WP_006964400.1 | TrbC/VirB2 family protein | - |
| GS397_RS27240 () | 33879..34844 | - | 966 | WP_026149853.1 | Type IV secretion system protein PtlH | VF |
| GS397_RS27245 () | 34951..35352 | - | 402 | WP_019053950.1 | helix-turn-helix domain-containing protein | - |
| GS397_RS27250 () | 35866..36105 | + | 240 | WP_019053948.1 | hypothetical protein | - |
| GS397_RS27255 () | 36284..37051 | + | 768 | WP_006954207.1 | GntR family transcriptional regulator | - |
| GS397_RS27260 () | 37391..37804 | + | 414 | WP_006954205.1 | antirestriction protein | - |
| GS397_RS27265 () | 37909..38172 | + | 264 | WP_006954203.1 | hypothetical protein | - |
| GS397_RS27270 () | 38278..38607 | + | 330 | WP_006954201.1 | hypothetical protein | - |
| GS397_RS27275 () | 38600..38899 | + | 300 | WP_019053944.1 | hypothetical protein | - |
| GS397_RS27280 () | 38896..39642 | + | 747 | WP_006954197.1 | Chromosome partitioning protein ParA | VF |
| GS397_RS27285 () | 39645..40667 | + | 1023 | WP_044663212.1 | ParB/RepB/Spo0J family partition protein | - |
| GS397_RS27290 () | 41015..41647 | + | 633 | WP_044663213.1 | hypothetical protein | - |
| GS397_RS27295 () | 41682..42122 | - | 441 | WP_019053940.1 | hypothetical protein | - |
| GS397_RS27300 () | 42122..42847 | - | 726 | WP_006954191.1 | IncP-type DNA transfer protein TraL | - |
| GS397_RS27305 () | 42844..43230 | - | 387 | WP_159368310.1 | hypothetical protein | - |
| GS397_RS27310 () | 43545..43931 | + | 387 | WP_086485394.1 | conjugal transfer protein TraJ | - |
| GS397_RS27315 () | 43947..46265 | + | 2319 | WP_086485395.1 | Protein TraI | Relaxase |
| GS397_RS27320 () | 46287..48179 | + | 1893 | WP_086485396.1 | Conjugal transfer protein TraG | VF |
| GS397_RS27325 () | 48176..48709 | + | 534 | WP_054944722.1 | conjugative transfer signal peptidase TraF | - |
| GS397_RS27330 () | 48714..50894 | + | 2181 | WP_086485397.1 | DNA topoisomerase 3 | - |
| GS397_RS27335 () | 50891..51142 | + | 252 | WP_054944723.1 | conjugal transfer protein | - |
| GS397_RS27340 () | 51162..54521 | + | 3360 | WP_086485398.1 | DUF1738 domain-containing protein | - |
| GS397_RS27345 () | 54523..54924 | - | 402 | WP_044663218.1 | hypothetical protein | - |
| GS397_RS27350 () | 54951..55196 | + | 246 | WP_019053933.1 | helix-turn-helix domain-containing protein | - |
| GS397_RS28125 () | 55343..55492 | + | 150 | WP_172668332.1 | hypothetical protein | - |
| GS397_RS28130 () | 55503..55667 | - | 165 | WP_021223002.1 | hypothetical protein | - |
| GS397_RS27355 () | 55919..57820 | - | 1902 | Protein_61 | Tn3 family transposase TnpA_ISMex22 | Transposase |
| GS397_RS27360 () | 57879..58643 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| GS397_RS27365 () | 58808..59527 | + | 720 | WP_159368311.1 | hypothetical protein | - |
| GS397_RS27370 () | 59635..60783 | + | 1149 | WP_022684427.1 | integrase | - |
| GS397_RS27375 () | 61646..62827 | - | 1182 | WP_022684426.1 | 4-hydroxybenzoate 3-monooxygenase | - |
| GS397_RS27380 () | 62959..63834 | + | 876 | WP_022684425.1 | helix-turn-helix domain-containing protein | - |
| GS397_RS27385 () | 64034..64681 | - | 648 | WP_159368312.1 | TetR/AcrR family transcriptional regulator | - |
| GS397_RS27390 () | 64941..65314 | + | 374 | Protein_68 | IS110 family transposase ISMdi14B | Transposase |
| GS397_RS27395 () | 65391..65529 | + | 139 | Protein_69 | IS5/IS1182 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|