MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 135293 bp
Accession: NZ_CP047219 Location: 1..135293 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: plasmid unnamed1
Accession: NZ_CP047219 Location: 1..135293 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GS397_RS26090 () | 416..3856 | - | 3441 | WP_159368138.1 | Multifunctional conjugation protein TraI | Relaxase |
| GS397_RS26095 () | 3860..6301 | - | 2442 | WP_159368139.1 | type IV secretion system DNA-binding domain-containing protein | - |
| GS397_RS26100 () | 6291..6575 | - | 285 | WP_159368140.1 | hypothetical protein | - |
| GS397_RS26105 () | 7135..7359 | + | 225 | WP_159368141.1 | hypothetical protein | - |
| GS397_RS26110 () | 7579..7884 | - | 306 | WP_159368142.1 | hypothetical protein | - |
| GS397_RS26115 () | 8095..8676 | - | 582 | WP_159368143.1 | hypothetical protein | - |
| GS397_RS26120 () | 9211..10356 | - | 1146 | WP_159368144.1 | DUF2493 domain-containing protein | - |
| GS397_RS26125 () | 10432..10878 | - | 447 | WP_159368145.1 | DUF736 domain-containing protein | - |
| GS397_RS26130 () | 11834..12280 | + | 447 | WP_159368146.1 | hypothetical protein | - |
| GS397_RS26135 () | 12318..12623 | + | 306 | WP_159368239.1 | integration host factor subunit alpha | - |
| GS397_RS26140 () | 12596..12796 | - | 201 | WP_159368147.1 | hypothetical protein | - |
| GS397_RS26145 () | 13195..13659 | + | 465 | WP_142639974.1 | hypothetical protein | - |
| GS397_RS26150 () | 13664..13858 | - | 195 | WP_008832697.1 | hypothetical protein | - |
| GS397_RS26155 () | 14052..14603 | - | 552 | WP_159368148.1 | hypothetical protein | - |
| GS397_RS26160 () | 14990..15322 | - | 333 | WP_159368149.1 | hypothetical protein | - |
| GS397_RS26165 () | 15326..15628 | - | 303 | WP_159368240.1 | hypothetical protein | - |
| GS397_RS26170 () | 15720..15986 | - | 267 | WP_159368150.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| GS397_RS26175 () | 16079..16447 | - | 369 | WP_159368151.1 | DUF3768 domain-containing protein | - |
| GS397_RS26180 () | 16465..17454 | - | 990 | WP_159368152.1 | hypothetical protein | - |
| GS397_RS28110 () | 17451..18254 | - | 804 | WP_201450353.1 | hypothetical protein | - |
| GS397_RS26190 () | 18265..18492 | - | 228 | WP_159368153.1 | hypothetical protein | - |
| GS397_RS26195 () | 18534..19778 | - | 1245 | WP_159368154.1 | hypothetical protein | - |
| GS397_RS26200 () | 19775..20989 | - | 1215 | WP_159368155.1 | type IV secretory system conjugative DNA transfer family protein | - |
| GS397_RS26205 () | 21058..22359 | - | 1302 | WP_159368156.1 | hypothetical protein | - |
| GS397_RS28115 () | 22602..23159 | + | 558 | WP_201450354.1 | hypothetical protein | - |
| GS397_RS26215 () | 23215..24585 | - | 1371 | WP_013039223.1 | IS1380 family transposase ISSp1 | Transposase |
| GS397_RS26220 () | 25009..25410 | - | 402 | WP_159368157.1 | hypothetical protein | - |
| GS397_RS26225 () | 26382..27163 | + | 782 | Protein_28 | IS5 family transposase ISPbe2 | Transposase |
| GS397_RS26230 () | 27600..29762 | - | 2163 | WP_159368158.1 | integrase | - |
| GS397_RS26235 () | 29759..31546 | - | 1788 | WP_159368159.1 | hypothetical protein | - |
| GS397_RS26240 () | 31543..32892 | - | 1350 | WP_159368160.1 | IS91 family transposase ISShvi3 | Transposase |
| GS397_RS26245 () | 33017..33304 | - | 288 | WP_159368161.1 | hypothetical protein | - |
| GS397_RS26250 () | 33301..34458 | - | 1158 | WP_159368162.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| GS397_RS26255 () | 34463..35242 | - | 780 | WP_159368163.1 | hypothetical protein | - |
| GS397_RS26260 () | 35261..35767 | - | 507 | WP_159368164.1 | hypothetical protein | - |
| GS397_RS26265 () | 35845..36111 | - | 267 | WP_159368165.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GS397_RS26270 () | 36095..36322 | - | 228 | WP_159368166.1 | ribbon-helix-helix protein, CopG family | Antitoxin Detail |
| GS397_RS28120 () | 36378..36887 | - | 510 | WP_201450355.1 | hypothetical protein | - |
| GS397_RS26280 () | 36904..37203 | - | 300 | WP_159368167.1 | hypothetical protein | - |
| GS397_RS26285 () | 37215..37886 | - | 672 | WP_159368168.1 | hypothetical protein | - |
| GS397_RS26290 () | 37973..38410 | - | 438 | WP_159368169.1 | hypothetical protein | - |
| GS397_RS26295 () | 38770..40236 | + | 1467 | WP_159368170.1 | hypothetical protein | - |
| GS397_RS26300 () | 40775..41632 | - | 858 | Protein_43 | Tn3 family transposase TnpA_ISAli20 | Transposase |
| GS397_RS26305 () | 41709..43064 | - | 1356 | WP_159368171.1 | hypothetical protein | - |
| GS397_RS26310 () | 43067..43654 | - | 588 | WP_159368172.1 | Tn3 family transposase ISPsy42 | Transposase |
| GS397_RS26315 () | 43800..46733 | + | 2934 | WP_159368173.1 | Tn3 family transposase TnpA_ISAzs29 | Transposase |
| GS397_RS26320 () | 47201..49021 | - | 1821 | WP_159368174.1 | GGDEF domain-containing phosphodiesterase | - |
| GS397_RS26325 () | 49095..49313 | - | 219 | WP_159368175.1 | cold shock domain-containing protein | - |
| GS397_RS26330 () | 49323..49661 | - | 339 | WP_159368176.1 | TraR/DksA family transcriptional regulator | - |
| GS397_RS26335 () | 49663..50514 | - | 852 | WP_159368177.1 | universal stress protein | - |
| GS397_RS26340 () | 50528..52012 | - | 1485 | WP_159368178.1 | SulP family inorganic anion transporter | - |
| GS397_RS26345 () | 52029..53327 | - | 1299 | WP_159368241.1 | cyclopropane-fatty-acyl-phospholipid synthase family protein | - |
| GS397_RS26350 () | 53629..54348 | + | 720 | WP_159368242.1 | spermidine synthase | - |
| GS397_RS26355 () | 54367..54681 | - | 315 | WP_159368179.1 | hypothetical protein | - |
| GS397_RS26360 () | 54692..55267 | - | 576 | WP_159368180.1 | hypothetical protein | - |
| GS397_RS26365 () | 55805..57463 | + | 1659 | WP_159368181.1 | Peptide chain release factor 3 | VF |
| GS397_RS26370 () | 57460..57630 | + | 171 | WP_159368182.1 | hypothetical protein | - |
| GS397_RS26375 () | 58240..61209 | - | 2970 | WP_159368183.1 | Tn3 family transposase TnpA_ISAli20 | Transposase |
| GS397_RS26380 () | 61350..61919 | + | 570 | WP_067736860.1 | Tn3 family transposase TnpR_ISMex38 | Transposase |
| GS397_RS26385 () | 61920..63293 | + | 1374 | WP_159368184.1 | hypothetical protein | - |
| GS397_RS26390 () | 63300..63920 | - | 621 | WP_201450356.1 | hypothetical protein | - |
| GS397_RS26395 () | 63917..64489 | - | 573 | WP_159368243.1 | hypothetical protein | - |
| GS397_RS26400 () | 64565..64783 | - | 219 | WP_008832890.1 | hypothetical protein | - |
| GS397_RS26405 () | 64771..64995 | - | 225 | WP_159368185.1 | hypothetical protein | - |
| GS397_RS26410 () | 64992..65636 | - | 645 | WP_159368186.1 | hypothetical protein | - |
| GS397_RS26415 () | 65661..66590 | - | 930 | WP_159368187.1 | DUF1738 domain-containing protein | - |
| GS397_RS26420 () | 66683..68956 | - | 2274 | WP_159368188.1 | ParB/RepB/Spo0J family partition protein | - |
| GS397_RS26425 () | 69082..73305 | - | 4224 | WP_159368189.1 | strawberry notch family protein | - |
| GS397_RS26430 () | 73340..74206 | - | 867 | WP_159368190.1 | toprim domain-containing protein | - |
| GS397_RS26435 () | 74203..74442 | - | 240 | WP_159368191.1 | hypothetical protein | - |
| GS397_RS26440 () | 74667..74936 | + | 270 | WP_159368192.1 | hypothetical protein | - |
| GS397_RS26445 () | 74941..76233 | - | 1293 | WP_159368193.1 | hypothetical protein | - |
| GS397_RS26450 () | 76451..77236 | + | 786 | WP_159368244.1 | lytic transglycosylase domain-containing protein | - |
| GS397_RS26455 () | 77501..78304 | - | 804 | WP_159368194.1 | helix-turn-helix domain-containing protein | - |
| GS397_RS26460 () | 78938..79819 | - | 882 | WP_159368195.1 | replication initiator protein A | - |
| GS397_RS26465 () | 80070..80579 | - | 510 | WP_159368196.1 | hypothetical protein | - |
| GS397_RS26470 () | 80684..81145 | - | 462 | WP_159368197.1 | hypothetical protein | - |
| GS397_RS26475 () | 81647..81913 | + | 267 | WP_159368245.1 | hypothetical protein | - |
| GS397_RS26480 () | 81969..82259 | + | 291 | WP_159368198.1 | type IV conjugative transfer system protein TraL | - |
| GS397_RS26485 () | 82261..82833 | + | 573 | WP_159368199.1 | type IV conjugative transfer system protein TraE | - |
| GS397_RS26490 () | 82830..83642 | + | 813 | WP_159368200.1 | type-F conjugative transfer system secretin TraK | - |
| GS397_RS26495 () | 83646..84971 | + | 1326 | WP_159368201.1 | conjugal transfer protein TraB | - |
| GS397_RS26500 () | 84958..85878 | + | 921 | WP_159368202.1 | DsbC family protein | - |
| GS397_RS26505 () | 85878..86846 | + | 969 | WP_159368203.1 | TraV family lipoprotein | - |
| GS397_RS26510 () | 86843..89416 | + | 2574 | WP_159368204.1 | type IV secretion system protein TraC | - |
| GS397_RS26515 () | 89422..89769 | + | 348 | WP_159368205.1 | hypothetical protein | - |
| GS397_RS26520 () | 89766..90476 | + | 711 | WP_159368206.1 | type-F conjugative transfer system protein TrbI | - |
| GS397_RS26525 () | 90457..91008 | + | 552 | WP_159368207.1 | S26 family signal peptidase | - |
| GS397_RS26530 () | 91005..91643 | + | 639 | WP_159368208.1 | type-F conjugative transfer system protein TraW | - |
| GS397_RS26535 () | 91643..91921 | + | 279 | WP_159368209.1 | hypothetical protein | - |
| GS397_RS26540 () | 91918..92940 | + | 1023 | WP_159368210.1 | TraU family protein | - |
| GS397_RS26545 () | 93536..95158 | + | 1623 | WP_159368211.1 | group II intron reverse transcriptase/maturase | - |
| GS397_RS26550 () | 95186..95920 | + | 735 | WP_159368246.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| GS397_RS26555 () | 95922..97793 | + | 1872 | WP_159368212.1 | conjugal transfer protein TraN | - |
| GS397_RS26560 () | 97771..98181 | + | 411 | WP_159368213.1 | hypothetical protein | - |
| GS397_RS26565 () | 98168..99022 | + | 855 | WP_159368214.1 | conjugal transfer protein TraF | - |
| GS397_RS26570 () | 99130..100512 | + | 1383 | WP_159368247.1 | conjugal transfer protein TraH | - |
| GS397_RS26575 () | 100528..103374 | + | 2847 | WP_159368215.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| GS397_RS26580 () | 103375..103581 | - | 207 | WP_159368216.1 | hypothetical protein | - |
| GS397_RS26585 () | 103962..105224 | - | 1263 | WP_159368217.1 | Y-family DNA polymerase | - |
| GS397_RS26590 () | 105231..105680 | - | 450 | WP_159368218.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| GS397_RS26595 () | 105803..106213 | - | 411 | WP_159368219.1 | hypothetical protein | - |
| GS397_RS26600 () | 106944..107615 | + | 672 | WP_159368220.1 | hypothetical protein | - |
| GS397_RS26605 () | 107763..108878 | + | 1116 | WP_004206949.1 | IS110 family transposase ISSfr2 | Transposase |
| GS397_RS26610 () | 109313..110482 | + | 1170 | WP_159368221.1 | cysteine desulfurase | - |
| GS397_RS26615 () | 110492..111415 | + | 924 | WP_159368222.1 | DUF4007 family protein | - |
| GS397_RS26620 () | 111412..114720 | + | 3309 | WP_159368223.1 | ATP-binding protein | - |
| GS397_RS26625 () | 114717..115556 | + | 840 | WP_159368224.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| GS397_RS26630 () | 115605..121019 | - | 5415 | WP_159368225.1 | DNA translocase SftA | VF |
| GS397_RS26635 () | 121016..122557 | - | 1542 | WP_159368226.1 | hypothetical protein | - |
| GS397_RS26640 () | 122560..124320 | - | 1761 | WP_159368248.1 | hypothetical protein | - |
| GS397_RS26645 () | 125048..125980 | + | 933 | WP_159368227.1 | hypothetical protein | - |
| GS397_RS26650 () | 125977..127791 | + | 1815 | WP_159368228.1 | hypothetical protein | - |
| GS397_RS26655 () | 128293..129330 | - | 1038 | WP_159368229.1 | Tn3 family transposase TnpR_TnXo19 | Transposase |
| GS397_RS26660 () | 129477..130412 | + | 936 | WP_159368249.1 | hypothetical protein | - |
| GS397_RS26665 () | 130861..131532 | + | 672 | WP_159368230.1 | ParA family protein | - |
| GS397_RS26670 () | 131529..131903 | + | 375 | WP_159368231.1 | hypothetical protein | - |
| GS397_RS26675 () | 131990..132715 | - | 726 | WP_159368232.1 | hypothetical protein | - |
| GS397_RS26680 () | 132712..133050 | - | 339 | WP_159368233.1 | hypothetical protein | - |
| GS397_RS26685 () | 133155..133355 | - | 201 | WP_159368234.1 | hypothetical protein | - |
| GS397_RS26690 () | 133348..133617 | - | 270 | WP_159368235.1 | hypothetical protein | - |
| GS397_RS26695 () | 133699..134586 | - | 888 | WP_159368236.1 | hypothetical protein | - |
| GS397_RS26700 () | 134593..135171 | - | 579 | WP_159368237.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|