MGE detailed information
MGE type: Genomic_island MGE length: 40247 bp
Accession: NZ_CP047218 Location: 4965496..5005742 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: chromosome
Accession: NZ_CP047218 Location: 4965496..5005742 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GS397_RS23570 () | 4961272..4962561 | - | 1290 | WP_159368123.1 | TraB/VirB10 family protein | - |
| GS397_RS23575 () | 4962615..4963421 | - | 807 | WP_159367797.1 | type-F conjugative transfer system secretin TraK | - |
| GS397_RS23580 () | 4963430..4963993 | - | 564 | WP_159367798.1 | type IV conjugative transfer system protein TraE | - |
| GS397_RS23585 () | 4964006..4964293 | - | 288 | WP_030538242.1 | type IV conjugative transfer system protein TraL | - |
| GS397_RS23590 () | 4964328..4964642 | - | 315 | WP_066559731.1 | hypothetical protein | - |
| GS397_RS23595 () | 4964778..4964927 | - | 150 | WP_159367799.1 | hypothetical protein | - |
| GS397_RS23600 () | 4965024..4965503 | + | 480 | WP_159368124.1 | hypothetical protein | - |
| GS397_RS23605 () | 4965496..4965720 | + | 225 | WP_159367800.1 | AlpA family transcriptional regulator | - |
| GS397_RS23610 () | 4965911..4966648 | + | 738 | WP_159367801.1 | hypothetical protein | - |
| GS397_RS23615 () | 4966674..4968587 | - | 1914 | WP_159367802.1 | hypothetical protein | - |
| GS397_RS23620 () | 4968584..4969231 | - | 648 | WP_159367803.1 | hypothetical protein | - |
| GS397_RS23625 () | 4969268..4972324 | - | 3057 | WP_159367804.1 | dynamin family protein | - |
| GS397_RS23630 () | 4972402..4974885 | - | 2484 | WP_159367805.1 | DUF262 domain-containing protein | - |
| GS397_RS23635 () | 4974882..4976624 | - | 1743 | WP_159367806.1 | DUF262 domain-containing protein | - |
| GS397_RS23640 () | 4976936..4977481 | + | 546 | WP_159367807.1 | hypothetical protein | - |
| GS397_RS23645 () | 4977573..4978511 | + | 939 | WP_159368125.1 | WYL domain-containing protein | - |
| GS397_RS23650 () | 4978521..4979549 | + | 1029 | WP_159367808.1 | hypothetical protein | - |
| GS397_RS23655 () | 4979577..4984460 | + | 4884 | WP_159367809.1 | AAA family ATPase | - |
| GS397_RS23660 () | 4984457..4986334 | + | 1878 | WP_159367810.1 | hypothetical protein | - |
| GS397_RS23665 () | 4986334..4987527 | + | 1194 | WP_159367811.1 | hypothetical protein | - |
| GS397_RS23670 () | 4987638..4989365 | + | 1728 | WP_159367812.1 | Chaperone protein ClpB | VF |
| GS397_RS23675 () | 4989362..4989943 | + | 582 | WP_159367813.1 | radical SAM protein | - |
| GS397_RS23680 () | 4990144..4990359 | + | 216 | WP_159367814.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| GS397_RS23685 () | 4990362..4991687 | + | 1326 | WP_159367815.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| GS397_RS23690 () | 4991820..4992290 | + | 471 | WP_159367816.1 | hypothetical protein | - |
| GS397_RS23695 () | 4992731..4994005 | + | 1275 | WP_159368126.1 | Prophage integrase IntS ; Integrase | Integrase |
| GS397_RS23700 () | 4994062..4994259 | - | 198 | WP_159367817.1 | helix-turn-helix domain-containing protein | - |
| GS397_RS23705 () | 4994561..4995574 | - | 1014 | WP_159367818.1 | RNA 3'-terminal phosphate cyclase | - |
| GS397_RS23710 () | 4995601..4996830 | - | 1230 | WP_159367819.1 | RtcB family protein | - |
| GS397_RS23720 () | 4997460..4999007 | - | 1548 | WP_159367820.1 | VWA domain-containing protein | - |
| GS397_RS23730 () | 4999360..5000955 | + | 1596 | WP_159367821.1 | Regulatory protein AtoC | VF |
| GS397_RS23735 () | 5001172..5002106 | + | 935 | Protein_4696 | IS630 family transposase | - |
| GS397_RS23740 () | 5002122..5003495 | - | 1374 | WP_159367822.1 | hypothetical protein | - |
| GS397_RS23750 () | 5003949..5004635 | - | 687 | Protein_4698 | IS256 family transposase ISSpwi2 | Transposase |
| GS397_RS23755 () | 5004702..5005757 | - | 1056 | WP_201450239.1 | hypothetical protein | - |
| GS397_RS23760 () | 5006070..5006702 | + | 633 | WP_159367824.1 | hypothetical protein | - |
| GS397_RS23765 () | 5006766..5008124 | - | 1359 | WP_159367825.1 | HlyD family type I secretion periplasmic adaptor subunit | - |
| GS397_RS23770 () | 5008124..5009854 | - | 1731 | WP_159368127.1 | type I secretion system permease/ATPase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|