MGE detailed information
MGE type: Genomic_island MGE length: 25285 bp
Accession: NZ_CP047218 Location: 346748..372032 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: chromosome
Accession: NZ_CP047218 Location: 346748..372032 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GS397_RS01765 () | 342685..343752 | + | 1068 | WP_010335889.1 | fatty acid desaturase | - |
| GS397_RS01770 () | 344966..345679 | - | 714 | WP_159365489.1 | hypothetical protein | - |
| GS397_RS01775 () | 346083..346817 | + | 735 | WP_159365490.1 | hypothetical protein | - |
| GS397_RS01780 () | 346748..347371 | + | 624 | WP_159365491.1 | hypothetical protein | - |
| GS397_RS01785 () | 347479..348387 | + | 909 | WP_159365492.1 | lytic murein transglycosylase | - |
| GS397_RS01790 () | 348454..349521 | - | 1068 | WP_159365493.1 | aspartyl protease family protein | - |
| GS397_RS01795 () | 349821..350576 | - | 756 | WP_159365494.1 | hypothetical protein | - |
| GS397_RS01800 () | 350594..353620 | - | 3027 | WP_159365495.1 | Ti-type conjugative transfer relaxase TraA | - |
| GS397_RS01805 () | 353793..354098 | + | 306 | WP_159365496.1 | conjugal transfer protein TraD | - |
| GS397_RS01810 () | 354121..354354 | + | 234 | WP_159365497.1 | conjugal transfer protein TraD | - |
| GS397_RS01815 () | 354403..354957 | + | 555 | WP_201450306.1 | hypothetical protein | - |
| GS397_RS01820 () | 355119..355685 | + | 567 | WP_159365499.1 | hypothetical protein | - |
| GS397_RS27785 () | 355717..355881 | + | 165 | WP_201450248.1 | hypothetical protein | - |
| GS397_RS01825 () | 355911..356246 | + | 336 | WP_159365500.1 | hypothetical protein | - |
| GS397_RS01830 () | 356261..356515 | + | 255 | WP_159365501.1 | hypothetical protein | - |
| GS397_RS01835 () | 356600..357187 | - | 588 | WP_159365502.1 | hypothetical protein | - |
| GS397_RS01840 () | 357245..357877 | - | 633 | WP_201450249.1 | hypothetical protein | - |
| GS397_RS01845 () | 358313..358888 | + | 576 | WP_159365503.1 | hypothetical protein | - |
| GS397_RS01850 () | 359081..360529 | - | 1449 | Protein_366 | chromosome partitioning protein ParB | - |
| GS397_RS01855 () | 360695..362065 | - | 1371 | WP_013039223.1 | IS1380 family transposase ISSp1 | Transposase |
| GS397_RS01860 () | 362174..362485 | - | 312 | Protein_368 | ParB N-terminal domain-containing protein | - |
| GS397_RS01865 () | 363817..364137 | - | 321 | WP_009820704.1 | DNA-binding transcriptional regulator | - |
| GS397_RS01870 () | 364127..364516 | - | 390 | WP_159367900.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GS397_RS01875 () | 364978..365181 | + | 204 | WP_159365504.1 | AlpA family transcriptional regulator | - |
| GS397_RS01880 () | 365242..366477 | - | 1236 | WP_159365505.1 | Prophage integrase IntA ; Integrase | Integrase |
| GS397_RS01885 () | 367815..368195 | + | 381 | WP_159365506.1 | hypothetical protein | - |
| GS397_RS01890 () | 368607..369116 | - | 510 | WP_159365507.1 | hypothetical protein | - |
| GS397_RS27790 () | 369113..369331 | - | 219 | Protein_375 | DUF3380 domain-containing protein | - |
| GS397_RS01900 () | 369857..370396 | - | 540 | WP_159365508.1 | AAA family ATPase | - |
| GS397_RS01905 () | 370847..371086 | + | 240 | WP_159365509.1 | AlpA family phage regulatory protein | - |
| GS397_RS01910 () | 371073..371285 | + | 213 | WP_159365510.1 | hypothetical protein | - |
| GS397_RS01915 () | 371335..371604 | + | 270 | WP_159365511.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| GS397_RS01920 () | 371601..372032 | + | 432 | WP_159365512.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| GS397_RS01925 () | 372032..373672 | + | 1641 | WP_159365513.1 | recombinase family protein | - |
| GS397_RS01930 () | 373699..374799 | - | 1101 | WP_004211023.1 | LPS export ABC transporter permease LptG | - |
| GS397_RS01935 () | 374804..376015 | - | 1212 | WP_004211025.1 | LPS export ABC transporter permease LptF | - |
| GS397_RS01940 () | 376153..376647 | + | 495 | WP_010337967.1 | DUF2141 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|