MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 15284 bp
Accession: NZ_CP047218 Location: 2848139..2863422 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: chromosome
Accession: NZ_CP047218 Location: 2848139..2863422 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GS397_RS13440 () | 2844493..2845695 | - | 1203 | WP_159366748.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| GS397_RS13445 () | 2845731..2846690 | - | 960 | WP_159366749.1 | hypothetical protein | - |
| GS397_RS13450 () | 2846753..2846926 | - | 174 | WP_159366750.1 | hypothetical protein | - |
| GS397_RS13455 () | 2847380..2848123 | - | 744 | WP_159366751.1 | hypothetical protein | - |
| GS397_RS13460 () | 2848139..2851147 | - | 3009 | WP_159366752.1 | Ti-type conjugative transfer relaxase TraA | - |
| GS397_RS13465 () | 2851321..2851626 | + | 306 | WP_159366753.1 | conjugal transfer protein TraD | - |
| GS397_RS13470 () | 2851664..2851891 | + | 228 | WP_159366754.1 | conjugal transfer protein TraD | - |
| GS397_RS13475 () | 2851943..2852305 | - | 363 | WP_159366755.1 | hypothetical protein | - |
| GS397_RS13480 () | 2852410..2852997 | + | 588 | WP_159366756.1 | hypothetical protein | - |
| GS397_RS13485 () | 2853009..2853200 | + | 192 | WP_159366757.1 | hypothetical protein | - |
| GS397_RS13490 () | 2853276..2853533 | + | 258 | WP_159366758.1 | hypothetical protein | - |
| GS397_RS13495 () | 2853538..2854083 | - | 546 | WP_159366759.1 | hypothetical protein | - |
| GS397_RS13500 () | 2854097..2855026 | - | 930 | WP_159366760.1 | HEPN domain-containing protein | - |
| GS397_RS13505 () | 2855023..2856024 | - | 1002 | WP_159366761.1 | hypothetical protein | - |
| GS397_RS13510 () | 2856867..2857283 | + | 417 | WP_159366762.1 | hypothetical protein | - |
| GS397_RS13515 () | 2857409..2859163 | - | 1755 | WP_159366763.1 | ParB/RepB/Spo0J family partition protein | - |
| GS397_RS13520 () | 2859606..2860145 | - | 540 | WP_159366764.1 | AAA family ATPase | - |
| GS397_RS13525 () | 2860597..2860836 | + | 240 | WP_010336341.1 | AlpA family phage regulatory protein | - |
| GS397_RS13530 () | 2860823..2861035 | + | 213 | WP_159366765.1 | hypothetical protein | - |
| GS397_RS13535 () | 2861085..2861354 | + | 270 | WP_010336339.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| GS397_RS13540 () | 2861351..2861782 | + | 432 | WP_159366766.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| GS397_RS13545 () | 2861782..2863422 | + | 1641 | WP_159366767.1 | hypothetical protein ; Integrase | Integrase |
| GS397_RS13550 () | 2863475..2864053 | - | 579 | WP_159366768.1 | XRE family transcriptional regulator | - |
| GS397_RS13555 () | 2864069..2864971 | + | 903 | WP_010336335.1 | DMT family transporter | - |
| GS397_RS13560 () | 2864996..2865754 | - | 759 | WP_159366769.1 | enoyl-CoA hydratase | - |
| GS397_RS13565 () | 2865853..2866845 | + | 993 | WP_159368020.1 | bile acid:sodium symporter | - |
| GS397_RS13570 () | 2866842..2867357 | + | 516 | WP_017499828.1 | phosphoribosyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|