MGE detailed information
MGE type: Genomic_island MGE length: 75627 bp
Accession: NZ_CP047218 Location: 1278872..1354498 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: chromosome
Accession: NZ_CP047218 Location: 1278872..1354498 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GS397_RS06090 () | 1274066..1274893 | - | 828 | WP_099230023.1 | LPS export ABC transporter ATP-binding protein | - |
| GS397_RS06095 () | 1274955..1276136 | - | 1182 | WP_099230025.1 | acetyl-CoA C-acetyltransferase | - |
| GS397_RS06100 () | 1276159..1276881 | - | 723 | WP_099230061.1 | acetoacetyl-CoA reductase | - |
| GS397_RS06105 () | 1276916..1277662 | - | 747 | WP_099230027.1 | SDR family oxidoreductase | - |
| GS397_RS06110 () | 1278450..1278875 | + | 426 | WP_062069279.1 | organic hydroperoxide resistance protein | - |
| GS397_RS06115 () | 1278872..1279363 | + | 492 | WP_062069282.1 | MarR family transcriptional regulator | - |
| GS397_RS06120 () | 1279392..1279901 | + | 510 | WP_201450264.1 | DUF4126 domain-containing protein | - |
| GS397_RS06125 () | 1279895..1280515 | + | 621 | WP_159365949.1 | glutathione S-transferase | - |
| GS397_RS06130 () | 1280547..1280702 | + | 156 | WP_156415402.1 | hypothetical protein | - |
| GS397_RS06135 () | 1280767..1282047 | - | 1281 | WP_159365950.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| GS397_RS06140 () | 1282617..1283809 | + | 1193 | Protein_1215 | IS256 family transposase ISGdi8 | Transposase |
| GS397_RS06145 () | 1283784..1284452 | - | 669 | WP_159367938.1 | hypothetical protein | VF |
| GS397_RS06150 () | 1284693..1285421 | + | 729 | WP_159365951.1 | Acetoacetyl-CoA reductase | VF |
| GS397_RS06155 () | 1285528..1285971 | + | 444 | WP_159365952.1 | hypothetical protein | - |
| GS397_RS06160 () | 1286060..1287496 | + | 1437 | WP_201450265.1 | Outer membrane protein OprM | VF |
| GS397_RS06165 () | 1287493..1288566 | + | 1074 | WP_159365954.1 | hypothetical protein | VF |
| GS397_RS06170 () | 1288571..1291318 | + | 2748 | WP_159365955.1 | Ribosome-associated ATPase | VF |
| GS397_RS06175 () | 1291320..1292447 | + | 1128 | WP_159365956.1 | ABC transporter permease | - |
| GS397_RS06180 () | 1292604..1294301 | + | 1698 | WP_159365957.1 | GMC family oxidoreductase | - |
| GS397_RS06185 () | 1294312..1296753 | + | 2442 | WP_159365958.1 | DUF3772 domain-containing protein | - |
| GS397_RS06190 () | 1296875..1298467 | - | 1593 | WP_159365959.1 | Cardiolipin synthase C | VF |
| GS397_RS06195 () | 1298488..1299063 | - | 576 | WP_159365960.1 | HdeD family acid-resistance protein | - |
| GS397_RS06200 () | 1299633..1300457 | - | 825 | WP_159365961.1 | IS5 family transposase ISGdi2 | Transposase |
| GS397_RS06205 () | 1300405..1302645 | + | 2241 | WP_159365962.1 | efflux RND transporter permease subunit | - |
| GS397_RS06210 () | 1303112..1303696 | + | 585 | WP_159365963.1 | RNA polymerase sigma factor | - |
| GS397_RS06215 () | 1304039..1304371 | + | 333 | WP_159365964.1 | AraC family transcriptional regulator | - |
| GS397_RS27840 () | 1304613..1304825 | + | 213 | WP_201450313.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GS397_RS06225 () | 1304886..1305209 | + | 324 | WP_159365965.1 | XRE family transcriptional regulator | - |
| GS397_RS06230 () | 1305249..1305599 | + | 351 | WP_159365966.1 | hypothetical protein | - |
| GS397_RS06235 () | 1305652..1306104 | + | 453 | WP_159365967.1 | MucR family transcriptional regulator | - |
| GS397_RS06240 () | 1306158..1306319 | - | 162 | WP_201450266.1 | DUF736 family protein | - |
| GS397_RS06245 () | 1306739..1307065 | + | 327 | WP_159365968.1 | nuclear transport factor 2 family protein | - |
| GS397_RS06250 () | 1307174..1307410 | - | 237 | WP_201450314.1 | DUF736 family protein | - |
| GS397_RS06255 () | 1307407..1307778 | - | 372 | WP_159365969.1 | hypothetical protein | - |
| GS397_RS06260 () | 1307898..1308824 | - | 927 | WP_159365970.1 | HEPN domain-containing protein | - |
| GS397_RS06265 () | 1308821..1309243 | - | 423 | WP_159365971.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| GS397_RS06270 () | 1309240..1309494 | - | 255 | WP_048576566.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| GS397_RS06275 () | 1309997..1310857 | - | 861 | WP_159365972.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| GS397_RS06280 () | 1310854..1311534 | - | 681 | WP_159365973.1 | hypothetical protein | - |
| GS397_RS06285 () | 1311897..1312457 | - | 561 | WP_159365974.1 | RES family NAD+ phosphorylase | - |
| GS397_RS06290 () | 1312464..1313099 | - | 636 | WP_159365975.1 | hypothetical protein | - |
| GS397_RS06295 () | 1313216..1313692 | + | 477 | WP_159365976.1 | hypothetical protein | - |
| GS397_RS06300 () | 1313689..1317453 | - | 3765 | WP_159367939.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| GS397_RS06305 () | 1317467..1318885 | - | 1419 | WP_159365977.1 | conjugal transfer protein TraH | - |
| GS397_RS06310 () | 1319005..1319583 | - | 579 | WP_048576612.1 | hypothetical protein | - |
| GS397_RS06315 () | 1319583..1320446 | - | 864 | WP_159365978.1 | conjugal transfer protein TraF | - |
| GS397_RS06320 () | 1320540..1320839 | + | 300 | WP_159365979.1 | DUF1778 domain-containing protein | - |
| GS397_RS06325 () | 1320861..1321376 | + | 516 | WP_159365980.1 | GNAT family N-acetyltransferase | - |
| GS397_RS06330 () | 1321478..1322083 | - | 606 | WP_159365981.1 | S26 family signal peptidase | - |
| GS397_RS06335 () | 1322055..1322948 | - | 894 | WP_159367940.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| GS397_RS06340 () | 1322920..1324041 | - | 1122 | WP_159365982.1 | conjugal transfer protein TraN | - |
| GS397_RS06345 () | 1324038..1325894 | - | 1857 | WP_159365983.1 | hypothetical protein | - |
| GS397_RS06350 () | 1326146..1327162 | - | 1017 | WP_159365984.1 | TraU family protein | - |
| GS397_RS06355 () | 1327159..1327770 | - | 612 | WP_159367941.1 | conjugal transfer protein TraW | - |
| GS397_RS06360 () | 1327808..1328176 | - | 369 | WP_159365985.1 | hypothetical protein | - |
| GS397_RS06365 () | 1328166..1328399 | - | 234 | WP_159365986.1 | hypothetical protein | - |
| GS397_RS06370 () | 1328396..1328722 | - | 327 | WP_159367942.1 | hypothetical protein | - |
| GS397_RS06375 () | 1328728..1331244 | - | 2517 | WP_159365987.1 | TraC family protein | - |
| GS397_RS06380 () | 1331241..1331876 | - | 636 | WP_159365988.1 | TraV family lipoprotein | - |
| GS397_RS06385 () | 1331912..1333216 | - | 1305 | WP_159365989.1 | TraB/VirB10 family protein | - |
| GS397_RS06390 () | 1333213..1333953 | - | 741 | WP_159367943.1 | type-F conjugative transfer system secretin TraK | - |
| GS397_RS06395 () | 1333985..1334584 | - | 600 | WP_201450267.1 | conjugal transfer protein | - |
| GS397_RS06400 () | 1334626..1334892 | - | 267 | WP_159365991.1 | hypothetical protein | - |
| GS397_RS06405 () | 1335000..1335317 | - | 318 | WP_048576588.1 | hypothetical protein | - |
| GS397_RS06410 () | 1335503..1336267 | - | 765 | WP_159365992.1 | DsbC family protein | - |
| GS397_RS06415 () | 1336251..1336574 | - | 324 | WP_159365993.1 | hypothetical protein | - |
| GS397_RS06420 () | 1336573..1336899 | + | 327 | WP_159365994.1 | hypothetical protein | - |
| GS397_RS06425 () | 1337052..1338248 | - | 1197 | WP_004207070.1 | IS256 family transposase ISGdi8 | Transposase |
| GS397_RS06430 () | 1338414..1338737 | + | 324 | WP_159365995.1 | hypothetical protein | - |
| GS397_RS06435 () | 1338850..1339269 | + | 420 | WP_148564727.1 | helix-turn-helix domain-containing protein | - |
| GS397_RS06440 () | 1339278..1339880 | + | 603 | WP_159365996.1 | GntR family transcriptional regulator | - |
| GS397_RS06445 () | 1340069..1340209 | + | 141 | WP_158500974.1 | hypothetical protein | - |
| GS397_RS06450 () | 1340278..1340958 | + | 681 | WP_159365997.1 | lasso peptide biosynthesis B2 protein | - |
| GS397_RS06455 () | 1340946..1342691 | + | 1746 | WP_159365998.1 | asparagine synthetase B family protein | - |
| GS397_RS06460 () | 1342676..1344757 | - | 2082 | WP_159365999.1 | prolyl oligopeptidase family serine peptidase | - |
| GS397_RS06465 () | 1344766..1346340 | - | 1575 | WP_159366000.1 | TonB-dependent receptor | - |
| GS397_RS06470 () | 1346589..1347788 | + | 1200 | WP_159366001.1 | IS256 family transposase ISPso1 | Transposase |
| GS397_RS06475 () | 1347803..1348759 | - | 957 | WP_159366002.1 | Vitamin B12 transporter BtuB | VF |
| GS397_RS06480 () | 1348904..1349968 | - | 1065 | WP_159366003.1 | FecR domain-containing protein | - |
| GS397_RS06485 () | 1349961..1350509 | - | 549 | WP_159366004.1 | sigma-70 family RNA polymerase sigma factor | - |
| GS397_RS06490 () | 1350787..1351182 | - | 396 | WP_159366005.1 | hypothetical protein | - |
| GS397_RS06495 () | 1351652..1352590 | + | 939 | WP_159366006.1 | toprim domain-containing protein | - |
| GS397_RS06500 () | 1352624..1352950 | + | 327 | Protein_1287 | ParB N-terminal domain-containing protein | - |
| GS397_RS06505 () | 1353274..1354498 | + | 1225 | Protein_1288 | IS256 family transposase ISPko2 | Transposase |
| GS397_RS06510 () | 1354670..1355821 | + | 1152 | WP_159366007.1 | tyrosine-type recombinase/integrase | - |
| GS397_RS06515 () | 1355814..1357562 | + | 1749 | WP_063976797.1 | hypothetical protein | - |
| GS397_RS06520 () | 1357559..1359400 | + | 1842 | WP_063976796.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|