MGE detailed information
MGE type: Genomic_island MGE length: 117155 bp
Accession: NZ_CP047218 Location: 1015165..1132319 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: chromosome
Accession: NZ_CP047218 Location: 1015165..1132319 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GS397_RS04905 () | 1011395..1011997 | - | 603 | WP_159365845.1 | type IV conjugative transfer system lipoprotein TraV | - |
| GS397_RS04910 () | 1012022..1013368 | - | 1347 | WP_159365846.1 | TraB/VirB10 family protein | - |
| GS397_RS04915 () | 1013365..1014141 | - | 777 | WP_159365847.1 | type-F conjugative transfer system secretin TraK | - |
| GS397_RS04920 () | 1014125..1014760 | - | 636 | WP_159365848.1 | conjugal transfer protein | - |
| GS397_RS04925 () | 1014766..1015032 | - | 267 | WP_008827576.1 | membrane protein | - |
| GS397_RS27815 () | 1015165..1015479 | - | 315 | WP_029547519.1 | hypothetical protein | - |
| GS397_RS04935 () | 1015676..1016491 | - | 816 | WP_159365850.1 | DsbC family protein | - |
| GS397_RS27820 () | 1016463..1016765 | + | 303 | WP_169859719.1 | hypothetical protein | - |
| GS397_RS04940 () | 1016934..1017356 | + | 423 | WP_159365851.1 | hypothetical protein | - |
| GS397_RS04945 () | 1017498..1017908 | + | 411 | WP_159365852.1 | helix-turn-helix domain-containing protein | - |
| GS397_RS04950 () | 1017915..1018544 | + | 630 | WP_159367927.1 | GntR family transcriptional regulator | - |
| GS397_RS04955 () | 1018711..1018845 | + | 135 | WP_146037182.1 | benenodin family lasso peptide | - |
| GS397_RS04960 () | 1018904..1019578 | + | 675 | WP_159365853.1 | lasso peptide biosynthesis B2 protein | - |
| GS397_RS04965 () | 1019575..1021257 | + | 1683 | WP_159365854.1 | asparagine synthetase B family protein | - |
| GS397_RS04970 () | 1021269..1023299 | - | 2031 | WP_159365855.1 | Atxe2 family lasso peptide isopeptidase | - |
| GS397_RS04975 () | 1023344..1025905 | - | 2562 | WP_159365856.1 | TonB-dependent receptor | - |
| GS397_RS04980 () | 1025991..1027028 | - | 1038 | WP_159365857.1 | FecR domain-containing protein | - |
| GS397_RS04985 () | 1027025..1027576 | - | 552 | WP_159367928.1 | RNA polymerase sigma factor | - |
| GS397_RS04990 () | 1028151..1028495 | - | 345 | WP_159365858.1 | MarR family transcriptional regulator | - |
| GS397_RS04995 () | 1028501..1029412 | - | 912 | WP_159365859.1 | phytanoyl-CoA dioxygenase family protein | - |
| GS397_RS05000 () | 1029425..1030051 | - | 627 | WP_159365860.1 | 4-coumaroyl-homoserine lactone synthase | VF |
| GS397_RS05005 () | 1030139..1030894 | - | 756 | WP_159365861.1 | LuxR family transcriptional regulator | - |
| GS397_RS05010 () | 1031068..1031346 | + | 279 | WP_159365862.1 | hypothetical protein | - |
| GS397_RS05015 () | 1031484..1032116 | - | 633 | WP_159365863.1 | DNA repair protein RadC | - |
| GS397_RS05020 () | 1032059..1032499 | - | 441 | WP_159367929.1 | hypothetical protein | - |
| GS397_RS05025 () | 1032550..1032894 | - | 345 | WP_159365864.1 | hypothetical protein | - |
| GS397_RS05030 () | 1032795..1033532 | - | 738 | WP_159365865.1 | hypothetical protein | - |
| GS397_RS05035 () | 1033945..1034823 | + | 879 | WP_169860749.1 | toprim domain-containing protein | - |
| GS397_RS05040 () | 1034881..1035156 | - | 276 | WP_159365866.1 | HU family DNA-binding protein | - |
| GS397_RS05045 () | 1035310..1037340 | + | 2031 | WP_159365867.1 | ParB/RepB/Spo0J family partition protein | - |
| GS397_RS05050 () | 1037383..1038048 | - | 666 | WP_159365868.1 | UPF0149 family protein | - |
| GS397_RS05055 () | 1038161..1042456 | + | 4296 | WP_159365869.1 | strawberry notch family protein | - |
| GS397_RS05060 () | 1042553..1043623 | - | 1071 | WP_159365870.1 | MucR family transcriptional regulator | - |
| GS397_RS05065 () | 1043816..1044301 | + | 486 | WP_159365871.1 | hypothetical protein | - |
| GS397_RS05070 () | 1044294..1044908 | + | 615 | WP_159365872.1 | hypothetical protein | - |
| GS397_RS05075 () | 1045006..1045704 | + | 699 | WP_159365873.1 | hypothetical protein | - |
| GS397_RS05080 () | 1045708..1046553 | + | 846 | WP_159365874.1 | type I restriction-modification system subunit M | - |
| GS397_RS05085 () | 1046535..1048292 | - | 1758 | WP_159365875.1 | ABC transporter ATP-binding protein/permease | - |
| GS397_RS05090 () | 1048497..1049693 | + | 1197 | WP_159365876.1 | DUF932 domain-containing protein | - |
| GS397_RS05095 () | 1049778..1049993 | + | 216 | WP_159365877.1 | hypothetical protein | - |
| GS397_RS05100 () | 1050038..1051732 | + | 1695 | WP_159367930.1 | PRTRC system ParB family protein | - |
| GS397_RS05105 () | 1051767..1052192 | + | 426 | WP_159365878.1 | PRTRC system protein E | - |
| GS397_RS05110 () | 1052247..1052453 | + | 207 | WP_159365879.1 | hypothetical protein | - |
| GS397_RS05115 () | 1052796..1053653 | + | 858 | Protein_1009 | hypothetical protein | - |
| GS397_RS05120 () | 1053665..1054495 | + | 831 | WP_159365880.1 | PRTRC system protein B | - |
| GS397_RS05125 () | 1054492..1055151 | + | 660 | WP_159365881.1 | PRTRC system protein A | - |
| GS397_RS05130 () | 1055141..1055944 | + | 804 | WP_159365882.1 | PRTRC system ThiF family protein | - |
| GS397_RS05135 () | 1055980..1056213 | + | 234 | WP_010338822.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| GS397_RS05140 () | 1056217..1056618 | + | 402 | WP_048938827.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| GS397_RS05145 () | 1056810..1058180 | + | 1371 | WP_159365883.1 | hypothetical protein | - |
| GS397_RS05150 () | 1058711..1059796 | + | 1086 | WP_159365884.1 | DUF4297 domain-containing protein | - |
| GS397_RS05155 () | 1059854..1061542 | + | 1689 | WP_159365885.1 | hypothetical protein | - |
| GS397_RS05160 () | 1062175..1062636 | + | 462 | WP_159365886.1 | hypothetical protein | - |
| GS397_RS05165 () | 1062653..1063735 | + | 1083 | WP_159365887.1 | hypothetical protein | - |
| GS397_RS27825 () | 1063828..1063992 | - | 165 | WP_169860756.1 | hypothetical protein | - |
| GS397_RS05170 () | 1064128..1065813 | + | 1686 | WP_159365888.1 | ATP-binding protein | - |
| GS397_RS05175 () | 1065890..1067092 | + | 1203 | WP_159365889.1 | DUF87 domain-containing protein | - |
| GS397_RS05180 () | 1067105..1068403 | + | 1299 | WP_159365890.1 | hypothetical protein | - |
| GS397_RS05185 () | 1068435..1068641 | + | 207 | WP_103094823.1 | hypothetical protein | - |
| GS397_RS05190 () | 1068638..1069561 | + | 924 | WP_201450263.1 | hypothetical protein | - |
| GS397_RS05195 () | 1069656..1071824 | - | 2169 | WP_159365891.1 | prolyl oligopeptidase family serine peptidase | - |
| GS397_RS05200 () | 1072538..1073005 | + | 468 | WP_086493719.1 | DUF736 domain-containing protein | - |
| GS397_RS05205 () | 1073089..1073370 | + | 282 | WP_159365892.1 | hypothetical protein | - |
| GS397_RS05210 () | 1073457..1074467 | + | 1011 | WP_159365893.1 | DUF2493 domain-containing protein | - |
| GS397_RS05215 () | 1074870..1075853 | + | 984 | WP_159365894.1 | DUF2493 domain-containing protein | - |
| GS397_RS05220 () | 1076134..1076655 | + | 522 | WP_159365895.1 | hypothetical protein | - |
| GS397_RS05225 () | 1076656..1076883 | - | 228 | WP_159367932.1 | hypothetical protein | - |
| GS397_RS05230 () | 1077098..1077445 | + | 348 | WP_159365896.1 | hypothetical protein | - |
| GS397_RS05235 () | 1077932..1078258 | + | 327 | WP_159365897.1 | hypothetical protein | - |
| GS397_RS05240 () | 1078429..1078728 | + | 300 | WP_129926606.1 | ribbon-helix-helix protein, CopG family | - |
| GS397_RS05245 () | 1078725..1080818 | + | 2094 | WP_159365898.1 | type IV secretion system DNA-binding domain-containing protein | - |
| GS397_RS05250 () | 1080815..1083769 | + | 2955 | WP_159365899.1 | relaxase domain-containing protein | - |
| GS397_RS05255 () | 1083787..1084224 | + | 438 | WP_201450312.1 | restriction endonuclease | - |
| GS397_RS05260 () | 1084439..1084855 | + | 417 | WP_129926648.1 | hypothetical protein | VF |
| GS397_RS05265 () | 1085296..1086213 | + | 918 | WP_017503726.1 | Tn3 family transposase ISPsy42 | Transposase |
| GS397_RS05270 () | 1086439..1087827 | + | 1389 | WP_010339505.1 | voltage-gated chloride channel family protein | - |
| GS397_RS05275 () | 1087820..1088221 | + | 402 | WP_008830660.1 | DUF190 domain-containing protein | - |
| GS397_RS05280 () | 1088296..1089033 | + | 738 | WP_037509280.1 | universal stress protein | - |
| GS397_RS05285 () | 1089100..1090413 | + | 1314 | WP_037509278.1 | phospholipase | - |
| GS397_RS05290 () | 1090481..1091053 | - | 573 | WP_037509276.1 | DedA family protein | - |
| GS397_RS05295 () | 1091050..1092486 | - | 1437 | WP_008830656.1 | beta-propeller fold lactonase family protein | - |
| GS397_RS05300 () | 1092483..1092866 | - | 384 | WP_037509275.1 | DUF305 domain-containing protein | - |
| GS397_RS05305 () | 1093049..1093645 | + | 597 | WP_008830654.1 | uracil-DNA glycosylase | - |
| GS397_RS05310 () | 1093729..1094598 | + | 870 | WP_008830653.1 | LysR family transcriptional regulator | - |
| GS397_RS05315 () | 1094598..1095749 | + | 1152 | WP_008830652.1 | TDT family transporter | - |
| GS397_RS05320 () | 1095835..1097085 | + | 1251 | WP_008830651.1 | molybdopterin-dependent oxidoreductase | - |
| GS397_RS05325 () | 1097097..1097573 | + | 477 | WP_008830650.1 | hypothetical protein | - |
| GS397_RS05330 () | 1097804..1098943 | - | 1140 | WP_080727012.1 | TniQ family protein | - |
| GS397_RS05335 () | 1098940..1099863 | - | 924 | WP_036526781.1 | TniB family NTP-binding protein | - |
| GS397_RS05340 () | 1099860..1101518 | - | 1659 | WP_017503293.1 | Transposon Tn7 transposition protein TnsB ; Integrase | Integrase |
| GS397_RS05345 () | 1101710..1102948 | + | 1239 | WP_004212862.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| GS397_RS05350 () | 1103263..1104141 | - | 879 | WP_159365900.1 | AAA family ATPase | - |
| GS397_RS05355 () | 1104068..1105380 | - | 1313 | Protein_1058 | IS481 family transposase ISGur11 | Transposase |
| GS397_RS05360 () | 1105572..1106144 | + | 573 | WP_021224432.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| GS397_RS05365 () | 1106434..1107636 | + | 1203 | WP_013039112.1 | aspartyl protease family protein | - |
| GS397_RS05370 () | 1107630..1108049 | - | 420 | WP_007406847.1 | helix-turn-helix domain-containing protein | - |
| GS397_RS05375 () | 1108125..1108751 | + | 627 | WP_004212870.1 | cation diffusion facilitator family transporter | - |
| GS397_RS05380 () | 1108751..1110718 | + | 1968 | WP_009824024.1 | FTR1 family protein | - |
| GS397_RS05385 () | 1110792..1111088 | + | 297 | WP_039396785.1 | hypothetical protein | - |
| GS397_RS05390 () | 1111149..1112426 | + | 1278 | WP_004212875.1 | TolC family protein | - |
| GS397_RS05395 () | 1112426..1113604 | + | 1179 | WP_159365901.1 | efflux RND transporter periplasmic adaptor subunit | - |
| GS397_RS05400 () | 1113608..1116853 | + | 3246 | WP_004212878.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| GS397_RS05405 () | 1116907..1117395 | + | 489 | WP_013849881.1 | SRPBCC domain-containing protein | - |
| GS397_RS05410 () | 1117392..1117769 | + | 378 | WP_039396774.1 | hypothetical protein | - |
| GS397_RS05415 () | 1117817..1118230 | + | 414 | WP_004212881.1 | hypothetical protein | - |
| GS397_RS05420 () | 1118234..1118920 | + | 687 | WP_004212882.1 | hypothetical protein | - |
| GS397_RS05425 () | 1118917..1119525 | + | 609 | WP_004212885.1 | cation diffusion facilitator family transporter | - |
| GS397_RS05430 () | 1119522..1122023 | + | 2502 | WP_004212886.1 | heavy metal translocating P-type ATPase | - |
| GS397_RS05435 () | 1122020..1122769 | + | 750 | WP_004212890.1 | HAD-IIB family hydrolase | - |
| GS397_RS05440 () | 1123201..1124362 | - | 1162 | Protein_1075 | IS110 family transposase ISSfr2 | Transposase |
| GS397_RS05445 () | 1124446..1125770 | - | 1325 | Protein_1076 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| GS397_RS05450 () | 1125834..1128803 | - | 2970 | WP_030089545.1 | Tn3 family transposase TnpA_ISAli20 | Transposase |
| GS397_RS05455 () | 1128895..1130313 | - | 1419 | WP_030089546.1 | mercury(II) reductase | - |
| GS397_RS05460 () | 1130352..1130681 | - | 330 | WP_081096816.1 | heavy-metal-associated domain-containing protein | - |
| GS397_RS05465 () | 1130694..1131089 | - | 396 | WP_007015440.1 | mercury transporter MerT | - |
| GS397_RS05470 () | 1131165..1131578 | + | 414 | WP_007015439.1 | helix-turn-helix domain-containing protein | - |
| GS397_RS05475 () | 1131759..1132319 | + | 561 | WP_062348316.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| GS397_RS05480 () | 1132395..1133690 | - | 1296 | WP_013039108.1 | hypothetical protein | - |
| GS397_RS05485 () | 1133939..1134343 | - | 405 | WP_007406376.1 | copper-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|