MGE detailed information
MGE type: Genomic_island MGE length: 40950 bp
Accession: NZ_CP046840 Location: 785719..826668 Organism: Vibrio cholerae strain F9993 Replicon: chromosome
Accession: NZ_CP046840 Location: 785719..826668 Organism: Vibrio cholerae strain F9993 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY07_RS03515 () | 780984..785546 | - | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| GPY07_RS03520 () | 785719..786366 | + | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| GPY07_RS03525 () | 786369..787277 | - | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| GPY07_RS03530 () | 787286..787759 | - | 474 | WP_000287237.1 | RDD family protein | - |
| GPY07_RS03535 () | 787775..788545 | - | 771 | WP_001880633.1 | accessory colonization factor AcfC | - |
| GPY07_RS03540 () | 788551..790431 | - | 1881 | WP_000672505.1 | methyl-accepting chemotaxis protein AcfB | - |
| GPY07_RS03545 () | 790438..791199 | - | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| GPY07_RS03550 () | 791199..792029 | - | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| GPY07_RS03555 () | 792236..793252 | - | 1017 | WP_001269573.1 | colonization factor TcpF | - |
| GPY07_RS03560 () | 793262..794284 | - | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| GPY07_RS03565 () | 794259..795770 | - | 1512 | WP_000020697.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| GPY07_RS03570 () | 795760..796218 | - | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| GPY07_RS03575 () | 796234..797070 | - | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| GPY07_RS03580 () | 797058..797513 | - | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| GPY07_RS03585 () | 797506..798974 | - | 1469 | Protein_695 | toxin-coregulated pilus secretin TcpC | - |
| GPY07_RS03590 () | 798977..799429 | - | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| GPY07_RS03595 () | 799429..800721 | - | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| GPY07_RS03600 () | 800801..801475 | - | 675 | WP_001176374.1 | toxin-coregulated pilus major pilin TcpA | - |
| GPY07_RS03605 () | 802018..802428 | - | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| GPY07_RS03610 () | 802413..803078 | - | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| GPY07_RS03615 () | 803519..805381 | + | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| GPY07_RS03620 () | 805657..806151 | - | 495 | WP_000218964.1 | thiol peroxidase | - |
| GPY07_RS03625 () | 806261..807199 | - | 939 | WP_001232137.1 | hypothetical protein | - |
| GPY07_RS03630 () | 807196..811797 | - | 4602 | WP_000482254.1 | membrane protein | - |
| GPY07_RS03635 () | 811910..814951 | - | 3042 | WP_001880619.1 | fibronectin type III domain-containing protein | - |
| GPY07_RS03640 () | 815131..816651 | + | 1521 | WP_000640055.1 | aldehyde dehydrogenase | - |
| GPY07_RS03645 () | 816993..817673 | + | 681 | Protein_707 | IS5 family transposase | - |
| GPY07_RS03650 () | 817699..818676 | - | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| GPY07_RS03660 () | 819280..820641 | + | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| GPY07_RS03665 () | 820638..821105 | + | 468 | WP_000804849.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| GPY07_RS03670 () | 821533..822111 | + | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| GPY07_RS03675 () | 822115..825051 | + | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| GPY07_RS03680 () | 825121..825825 | + | 705 | WP_001880605.1 | NERD domain-containing protein | - |
| GPY07_RS03685 () | 826159..826668 | - | 510 | WP_001077909.1 | hypothetical protein | - |
| GPY07_RS03690 () | 826866..828545 | - | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| GPY07_RS03700 () | 828768..829451 | + | 684 | WP_000841479.1 | MFS transporter | - |
| GPY07_RS03705 () | 829519..831135 | - | 1617 | WP_000620446.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|