MGE detailed information
MGE type: Genomic_island MGE length: 43687 bp
Accession: NZ_CP046747 Location: 491375..535061 Organism: Vibrio cholerae strain 3541-04 Replicon: chromosome
Accession: NZ_CP046747 Location: 491375..535061 Organism: Vibrio cholerae strain 3541-04 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY00_RS02235 () | 486528..486962 | - | 435 | WP_000815880.1 | type II toxin-antitoxin system RatA family toxin | - |
| GPY00_RS02240 () | 487147..487632 | + | 486 | WP_000162689.1 | SsrA-binding protein SmpB | - |
| GPY00_RS02250 () | 488233..489491 | + | 1259 | Protein_430 | tyrosine-type recombinase/integrase | - |
| GPY00_RS02255 () | 489496..489896 | + | 401 | Protein_431 | transposase | - |
| GPY00_RS02260 () | 490545..490760 | + | 216 | WP_025989460.1 | preprotein translocase | - |
| GPY00_RS02265 () | 491375..495948 | - | 4574 | Protein_433 | accessory colonization factor AcfD | - |
| GPY00_RS02270 () | 496125..496772 | + | 648 | WP_158128416.1 | accessory colonization factor AcfA | - |
| GPY00_RS02275 () | 496775..497683 | - | 909 | WP_001887009.1 | M23 family metallopeptidase | - |
| GPY00_RS02280 () | 497692..498165 | - | 474 | WP_158128417.1 | RDD family protein | - |
| GPY00_RS02285 () | 498181..498951 | - | 771 | WP_001887007.1 | accessory colonization factor AcfC | - |
| GPY00_RS02290 () | 498957..500837 | - | 1881 | WP_001887006.1 | methyl-accepting chemotaxis protein AcfB | - |
| GPY00_RS02295 () | 500844..501605 | - | 762 | WP_158128418.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| GPY00_RS02300 () | 501605..502435 | - | 831 | WP_158128419.1 | pilus/toxin transcriptional regulator ToxT | - |
| GPY00_RS02305 () | 502648..503655 | - | 1008 | WP_158128420.1 | pilus assembly protein | - |
| GPY00_RS02310 () | 503665..504687 | - | 1023 | WP_001887001.1 | toxin-coregulated pilus assembly protein TcpE | - |
| GPY00_RS02315 () | 504662..506173 | - | 1512 | WP_158128421.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| GPY00_RS02320 () | 506163..506621 | - | 459 | WP_001886998.1 | toxin-coregulated pilus protein TcpS | - |
| GPY00_RS02325 () | 506637..507473 | - | 837 | WP_001886997.1 | toxin-coregulated pilus protein TcpD | - |
| GPY00_RS02330 () | 507461..507916 | - | 456 | WP_000200907.1 | toxin-coregulated pilus protein TcpR | - |
| GPY00_RS02335 () | 507909..509378 | - | 1470 | WP_001886995.1 | toxin-coregulated pilus secretin TcpC | - |
| GPY00_RS02340 () | 509381..509833 | - | 453 | WP_080286678.1 | toxin-coregulated pilus protein TcpQ | - |
| GPY00_RS02345 () | 509833..511125 | - | 1293 | WP_001886993.1 | toxin-coregulated pilus minor pilin TcpB | - |
| GPY00_RS02350 () | 511206..511880 | - | 675 | WP_158128422.1 | type IV pilus major pilin | - |
| GPY00_RS02355 () | 512423..512833 | - | 411 | WP_001886989.1 | toxin-coregulated pilus protein TcpH | - |
| GPY00_RS02360 () | 512818..513483 | - | 666 | WP_158128423.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| GPY00_RS02365 () | 513926..515788 | + | 1863 | WP_001886987.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| GPY00_RS02370 () | 516079..516573 | - | 495 | WP_158128424.1 | thiol peroxidase | - |
| GPY00_RS02375 () | 516682..517589 | - | 908 | Protein_455 | peptidase | - |
| GPY00_RS02380 () | 517593..517995 | - | 403 | Protein_456 | hypothetical protein | - |
| GPY00_RS02385 () | 518218..522203 | - | 3986 | Protein_457 | hypothetical protein | - |
| GPY00_RS02390 () | 522317..522729 | - | 413 | Protein_458 | peptidase M66 | - |
| GPY00_RS02395 () | 523182..524702 | + | 1521 | WP_001886982.1 | aldehyde dehydrogenase | - |
| GPY00_RS02400 () | 524875..525795 | + | 921 | WP_158128425.1 | IS5 family transposase | - |
| GPY00_RS02405 () | 526477..526653 | - | 177 | WP_019830038.1 | AlpA family transcriptional regulator | - |
| GPY00_RS02410 () | 526797..527273 | + | 477 | WP_019830039.1 | DNA repair protein RadC | - |
| GPY00_RS02415 () | 527270..527698 | + | 429 | WP_044127594.1 | DUF2787 domain-containing protein | - |
| GPY00_RS02420 () | 527749..528195 | + | 447 | WP_044127593.1 | DUF2787 domain-containing protein | - |
| GPY00_RS02425 () | 528298..528825 | + | 528 | WP_019830042.1 | Flp pilus assembly complex ATPase component TadA | - |
| GPY00_RS02430 () | 529316..529957 | - | 642 | WP_044127592.1 | inovirus Gp2 family protein | - |
| GPY00_RS02435 () | 531137..531316 | + | 180 | WP_044127623.1 | hypothetical protein | - |
| GPY00_RS02440 () | 531396..531596 | - | 201 | WP_019830047.1 | AlpA family transcriptional regulator | - |
| GPY00_RS02450 () | 532230..533591 | + | 1362 | WP_032472260.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| GPY00_RS02455 () | 533588..534055 | + | 468 | WP_044127591.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| GPY00_RS02460 () | 534483..535061 | + | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| GPY00_RS02465 () | 535065..537980 | + | 2916 | WP_199252409.1 | DEAD/DEAH box helicase family protein | - |
| GPY00_RS02470 () | 538017..539696 | - | 1680 | WP_199252410.1 | SWIM zinc finger domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|