MGE detailed information
MGE type: Genomic_island MGE length: 50862 bp
Accession: NZ_CP046740 Location: 2237767..2288628 Organism: Vibrio cholerae strain 3566-06 Replicon: chromosome
Accession: NZ_CP046740 Location: 2237767..2288628 Organism: Vibrio cholerae strain 3566-06 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPW70_RS15095 () | 2232964..2234628 | + | 1665 | WP_000879550.1 | DNA repair protein RecN | - |
| GPW70_RS15100 () | 2234787..2235146 | + | 360 | WP_001160907.1 | outer membrane protein assembly factor BamE | - |
| GPW70_RS15105 () | 2235222..2235527 | - | 306 | WP_001918351.1 | RnfH family protein | - |
| GPW70_RS15110 () | 2235530..2235964 | - | 435 | WP_000815880.1 | type II toxin-antitoxin system RatA family toxin | - |
| GPW70_RS15115 () | 2236148..2236633 | + | 486 | WP_000162689.1 | SsrA-binding protein SmpB | - |
| GPW70_RS15125 () | 2237234..2238492 | + | 1259 | Protein_1962 | tyrosine-type recombinase/integrase | - |
| GPW70_RS15130 () | 2238497..2238897 | + | 401 | Protein_1963 | transposase | - |
| GPW70_RS15135 () | 2239546..2239761 | + | 216 | WP_025989460.1 | preprotein translocase | - |
| GPW70_RS15140 () | 2240378..2244952 | - | 4575 | WP_001887011.1 | accessory colonization factor AcfD | - |
| GPW70_RS15145 () | 2245129..2245776 | + | 648 | WP_019829082.1 | accessory colonization factor AcfA | - |
| GPW70_RS15150 () | 2245779..2246687 | - | 909 | WP_001887009.1 | M23 family metallopeptidase | - |
| GPW70_RS15155 () | 2246699..2247169 | - | 471 | WP_001887008.1 | RDD family protein | - |
| GPW70_RS15160 () | 2247185..2247955 | - | 771 | WP_001887007.1 | accessory colonization factor AcfC | - |
| GPW70_RS15165 () | 2247961..2249841 | - | 1881 | WP_001887006.1 | methyl-accepting chemotaxis protein AcfB | - |
| GPW70_RS15170 () | 2249848..2250609 | - | 762 | WP_001887005.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| GPW70_RS15175 () | 2250609..2251439 | - | 831 | WP_001887004.1 | pilus/toxin transcriptional regulator ToxT | - |
| GPW70_RS15180 () | 2251650..2252657 | - | 1008 | WP_158106848.1 | pilus assembly protein | - |
| GPW70_RS15185 () | 2252667..2253689 | - | 1023 | WP_001887001.1 | toxin-coregulated pilus assembly protein TcpE | - |
| GPW70_RS15190 () | 2253664..2255175 | - | 1512 | WP_032472663.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| GPW70_RS15195 () | 2255165..2255623 | - | 459 | WP_001886998.1 | toxin-coregulated pilus protein TcpS | - |
| GPW70_RS15200 () | 2255639..2256475 | - | 837 | WP_001886997.1 | toxin-coregulated pilus protein TcpD | - |
| GPW70_RS15205 () | 2256463..2256918 | - | 456 | WP_000200907.1 | toxin-coregulated pilus protein TcpR | - |
| GPW70_RS15210 () | 2256911..2258380 | - | 1470 | WP_001886995.1 | toxin-coregulated pilus secretin TcpC | - |
| GPW70_RS15215 () | 2258383..2258835 | - | 453 | WP_080286678.1 | toxin-coregulated pilus protein TcpQ | - |
| GPW70_RS15220 () | 2258835..2260127 | - | 1293 | WP_001886993.1 | toxin-coregulated pilus minor pilin TcpB | - |
| GPW70_RS15225 () | 2260208..2260882 | - | 675 | WP_001886991.1 | type IV pilus major pilin | - |
| GPW70_RS15230 () | 2261425..2261835 | - | 411 | WP_001886989.1 | toxin-coregulated pilus protein TcpH | - |
| GPW70_RS15235 () | 2261820..2262485 | - | 666 | WP_001886988.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| GPW70_RS15240 () | 2262924..2264786 | + | 1863 | WP_001886987.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| GPW70_RS15245 () | 2265077..2265571 | - | 495 | WP_001886985.1 | thiol peroxidase | - |
| GPW70_RS15250 () | 2265681..2266619 | - | 939 | WP_001886984.1 | hypothetical protein | - |
| GPW70_RS15255 () | 2266597..2266999 | - | 403 | Protein_1988 | hypothetical protein | - |
| GPW70_RS15260 () | 2267222..2271209 | - | 3988 | Protein_1989 | hypothetical protein | - |
| GPW70_RS15265 () | 2271323..2271732 | - | 410 | Protein_1990 | peptidase M66 | - |
| GPW70_RS15270 () | 2272185..2273705 | + | 1521 | WP_001886982.1 | aldehyde dehydrogenase | - |
| GPW70_RS15275 () | 2273878..2274798 | + | 921 | WP_001886981.1 | IS5 family transposase | - |
| GPW70_RS15280 () | 2275480..2275656 | - | 177 | WP_019830038.1 | AlpA family transcriptional regulator | - |
| GPW70_RS15285 () | 2275800..2276276 | + | 477 | WP_019830039.1 | DNA repair protein RadC | - |
| GPW70_RS15290 () | 2276273..2276701 | + | 429 | WP_019830040.1 | DUF2787 domain-containing protein | - |
| GPW70_RS15295 () | 2276752..2277198 | + | 447 | WP_019830041.1 | DUF2787 domain-containing protein | - |
| GPW70_RS15300 () | 2277301..2277828 | + | 528 | WP_019830042.1 | Flp pilus assembly complex ATPase component TadA | - |
| GPW70_RS15305 () | 2277928..2278287 | + | 360 | WP_134983340.1 | hypothetical protein | - |
| GPW70_RS15310 () | 2278320..2278961 | - | 642 | WP_032472660.1 | inovirus Gp2 family protein | - |
| GPW70_RS15315 () | 2280421..2280621 | - | 201 | WP_019830047.1 | AlpA family transcriptional regulator | - |
| GPW70_RS15325 () | 2281239..2282600 | + | 1362 | WP_032472659.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| GPW70_RS15330 () | 2282597..2283064 | + | 468 | WP_032472658.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| GPW70_RS15335 () | 2283492..2284070 | + | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| GPW70_RS15340 () | 2284074..2287010 | + | 2937 | WP_032472657.1 | DEAD/DEAH box helicase family protein | - |
| GPW70_RS15345 () | 2287081..2288030 | + | 950 | Protein_2005 | NERD domain-containing protein | - |
| GPW70_RS15350 () | 2288119..2288628 | - | 510 | WP_001077909.1 | hypothetical protein | - |
| GPW70_RS15355 () | 2288826..2290505 | - | 1680 | WP_032472656.1 | SWIM zinc finger domain-containing protein | - |
| GPW70_RS15365 () | 2290729..2291412 | + | 684 | WP_000841479.1 | MFS transporter | - |
| GPW70_RS15370 () | 2291481..2293097 | - | 1617 | WP_001886974.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|