MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 157888 bp
Accession: NZ_CP046514 Location: 1253002..1410889 Organism: Bifidobacterium longum strain JSRL02 Replicon: chromosome
Accession: NZ_CP046514 Location: 1253002..1410889 Organism: Bifidobacterium longum strain JSRL02 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GN236_RS05525 () | 1248358..1249311 | + | 954 | WP_077383298.1 | DUF4913 domain-containing protein | - |
| GN236_RS05530 () | 1249298..1250425 | + | 1128 | WP_156625152.1 | hypothetical protein | - |
| GN236_RS09830 () | 1250528..1250842 | + | 315 | WP_032741575.1 | hypothetical protein | - |
| GN236_RS05535 () | 1250839..1252122 | + | 1284 | WP_197272274.1 | HipA domain-containing protein | - |
| GN236_RS09835 () | 1252142..1253449 | - | 1308 | WP_197272275.1 | relaxase | - |
| GN236_RS05545 () | 1253567..1254349 | + | 783 | WP_156625156.1 | Fic family protein | - |
| GN236_RS05550 () | 1254478..1255449 | + | 972 | WP_007057142.1 | DNA (cytosine-5-)-methyltransferase | - |
| GN236_RS05555 () | 1255495..1256763 | + | 1269 | WP_010080726.1 | hypothetical protein | - |
| GN236_RS05560 () | 1256725..1257168 | - | 444 | WP_012471833.1 | plasmid mobilization relaxosome protein MobC | - |
| GN236_RS05565 () | 1257181..1257375 | - | 195 | WP_156625468.1 | hypothetical protein | - |
| GN236_RS05570 () | 1257505..1257936 | - | 432 | WP_156625158.1 | ribbon-helix-helix domain-containing protein | - |
| GN236_RS05575 () | 1258011..1260170 | - | 2160 | WP_156625161.1 | type IA DNA topoisomerase | - |
| GN236_RS05580 () | 1260277..1260570 | - | 294 | WP_007054354.1 | hypothetical protein | - |
| GN236_RS05585 () | 1260755..1261153 | + | 399 | WP_014485592.1 | hypothetical protein | - |
| GN236_RS09840 () | 1261150..1262109 | + | 960 | WP_197272276.1 | hypothetical protein | - |
| GN236_RS05590 () | 1262106..1263191 | + | 1086 | WP_007057144.1 | CHAP domain-containing protein | - |
| GN236_RS05595 () | 1263349..1264058 | + | 710 | Protein_1054 | hypothetical protein | - |
| GN236_RS05600 () | 1264084..1265169 | + | 1086 | WP_156625163.1 | antirestriction protein ArdA | - |
| GN236_RS05605 () | 1265185..1267002 | + | 1818 | WP_115790998.1 | hypothetical protein | - |
| GN236_RS05610 () | 1267042..1268073 | + | 1032 | WP_156625166.1 | hypothetical protein | - |
| GN236_RS05615 () | 1268235..1269140 | + | 906 | WP_007057623.1 | Fic family protein | - |
| GN236_RS05620 () | 1269214..1269765 | + | 552 | WP_197272277.1 | hypothetical protein | - |
| GN236_RS05625 () | 1269749..1270705 | + | 957 | WP_165501186.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| GN236_RS05630 () | 1270724..1271050 | + | 327 | WP_022527659.1 | hypothetical protein | - |
| GN236_RS05635 () | 1271107..1272042 | - | 936 | WP_007057632.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| GN236_RS05640 () | 1272477..1273520 | - | 1044 | WP_007052691.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| GN236_RS05645 () | 1273517..1274071 | - | 555 | WP_008783284.1 | N-alpha-acetyltransferase RimI | VF |
| GN236_RS09845 () | 1274088..1274969 | - | 882 | WP_007052689.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB | - |
| GN236_RS09850 () | 1275031..1275597 | - | 567 | WP_007052688.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| GN236_RS05655 () | 1275618..1276589 | - | 972 | WP_007054366.1 | DNA polymerase III subunit delta | - |
| GN236_RS05660 () | 1276656..1278002 | - | 1347 | WP_007054367.1 | amidohydrolase family protein | - |
| GN236_RS05665 () | 1278142..1279896 | - | 1755 | WP_165506377.1 | ComEC/Rec2 family competence protein | - |
| GN236_RS09855 () | 1279893..1280390 | - | 498 | WP_007054369.1 | helix-hairpin-helix domain-containing protein | - |
| GN236_RS05675 () | 1280833..1283796 | - | 2964 | WP_011068058.1 | leucine--tRNA ligase | - |
| GN236_RS05680 () | 1283839..1284684 | - | 846 | WP_010080747.1 | glutamate ABC transporter substrate-binding protein | - |
| GN236_RS05685 () | 1284780..1285730 | - | 951 | WP_007054371.1 | magnesium transporter CorA family protein | - |
| GN236_RS05690 () | 1285845..1286690 | - | 846 | WP_131210910.1 | histidine phosphatase family protein | - |
| GN236_RS05695 () | 1286759..1288054 | + | 1296 | WP_197272278.1 | class I SAM-dependent methyltransferase | - |
| GN236_RS05700 () | 1288082..1288486 | - | 405 | WP_007052678.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| GN236_RS05705 () | 1288765..1289700 | + | 936 | WP_007052677.1 | DMT family transporter | - |
| GN236_RS09860 () | 1289754..1289864 | + | 111 | Protein_1078 | nitroreductase | - |
| GN236_RS05710 () | 1290084..1291052 | + | 969 | WP_008783276.1 | hypothetical protein | - |
| GN236_RS05715 () | 1291125..1291664 | + | 540 | WP_032682381.1 | Peptidyl-prolyl cis-trans isomerase B | VF |
| GN236_RS05720 () | 1291761..1292276 | + | 516 | WP_007054376.1 | IS3 family transposase ISBlo3 | Transposase |
| GN236_RS05725 () | 1292276..1293130 | + | 855 | WP_080746424.1 | IS3 family transposase ISBlo3 | Transposase |
| GN236_RS05730 () | 1293248..1295572 | - | 2325 | WP_012471819.1 | Bifunctional (p)ppGpp synthase/hydrolase RelA | VF |
| GN236_RS05735 () | 1295706..1296182 | - | 477 | WP_007055963.1 | dUTP diphosphatase | - |
| GN236_RS05740 () | 1296182..1296475 | - | 294 | WP_007052669.1 | DUF4193 domain-containing protein | - |
| GN236_RS05745 () | 1296634..1297725 | + | 1092 | WP_007056777.1 | DUF3071 domain-containing protein | - |
| GN236_RS05750 () | 1297735..1299003 | - | 1269 | WP_032735789.1 | alkaline phosphatase family protein | - |
| GN236_RS05755 () | 1299254..1301983 | + | 2730 | WP_011068049.1 | DNA topoisomerase IV subunit A | - |
| GN236_RS05760 () | 1302128..1302916 | + | 789 | WP_065437222.1 | Transcriptional regulatory protein TcrA | VF |
| GN236_RS05765 () | 1302927..1307661 | - | 4735 | Protein_1090 | DEAD/DEAH box helicase | - |
| GN236_RS05770 () | 1307677..1308669 | - | 993 | WP_197272279.1 | ribokinase | - |
| GN236_RS05775 () | 1308716..1309942 | - | 1227 | WP_197272280.1 | MFS transporter | - |
| GN236_RS05780 () | 1310109..1312427 | - | 2319 | WP_013410790.1 | type IIA DNA topoisomerase subunit B | - |
| GN236_RS05785 () | 1312485..1313909 | - | 1425 | WP_007055162.1 | RNA polymerase principal sigma factor HrdB | VF |
| GN236_RS05790 () | 1314112..1314774 | - | 663 | WP_007052659.1 | DUF4192 family protein | - |
| GN236_RS05795 () | 1314981..1316063 | + | 1083 | WP_007058720.1 | polyprenyl synthetase family protein | - |
| GN236_RS05800 () | 1316207..1318480 | + | 2274 | WP_011068042.1 | Serine/threonine-protein kinase PK-1 | VF |
| GN236_RS05805 () | 1318532..1319236 | - | 705 | WP_011068041.1 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | - |
| GN236_RS05810 () | 1319297..1319992 | + | 696 | WP_013410786.1 | hypothetical protein | - |
| GN236_RS05815 () | 1320233..1321279 | - | 1047 | WP_011068039.1 | anthranilate phosphoribosyltransferase | - |
| GN236_RS09865 () | 1322007..1322222 | + | 216 | WP_007055155.1 | transposase | - |
| GN236_RS05830 () | 1322533..1325427 | - | 2895 | WP_007052649.1 | preprotein translocase subunit SecA | - |
| GN236_RS05835 () | 1325589..1326251 | - | 663 | WP_007052648.1 | ribosome-associated translation inhibitor RaiA | - |
| GN236_RS05845 () | 1327128..1327721 | - | 594 | WP_008783103.1 | RecX family transcriptional regulator | - |
| GN236_RS05850 () | 1327724..1328917 | - | 1194 | WP_041473613.1 | recombinase RecA | - |
| GN236_RS05855 () | 1329218..1329451 | - | 234 | WP_007052642.1 | DUF3046 domain-containing protein | - |
| GN236_RS05860 () | 1329563..1330078 | - | 516 | WP_165502509.1 | helix-turn-helix transcriptional regulator | - |
| GN236_RS05865 () | 1330138..1330671 | - | 534 | WP_007052640.1 | CinA family protein | - |
| GN236_RS05870 () | 1330683..1331318 | - | 636 | WP_007052639.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| GN236_RS05875 () | 1331495..1334404 | - | 2910 | WP_156625170.1 | DNA translocase FtsK | - |
| GN236_RS05880 () | 1334626..1335375 | + | 750 | WP_007056215.1 | putative adenosine monophosphate-protein transferase fic | VF |
| GN236_RS05885 () | 1335409..1336395 | - | 987 | WP_007052636.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| GN236_RS05890 () | 1336406..1337860 | - | 1455 | WP_197272281.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| GN236_RS05895 () | 1337992..1338732 | + | 741 | WP_007056209.1 | GTP pyrophosphokinase YwaC | VF |
| GN236_RS05900 () | 1338765..1339781 | - | 1017 | WP_007052632.1 | DMT family transporter | - |
| GN236_RS05905 () | 1339921..1340820 | - | 900 | WP_007052631.1 | Bax inhibitor-1/YccA family protein | - |
| GN236_RS05910 () | 1340989..1341129 | + | 141 | Protein_1117 | response regulator transcription factor | - |
| GN236_RS05915 () | 1341170..1341811 | + | 642 | WP_029679476.1 | GNAT family N-acetyltransferase | - |
| GN236_RS05920 () | 1341901..1344006 | + | 2106 | WP_156625172.1 | DUF262 domain-containing protein | - |
| GN236_RS05925 () | 1344066..1344557 | - | 492 | WP_007052625.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| GN236_RS05930 () | 1344554..1344946 | - | 393 | WP_007057212.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| GN236_RS05935 () | 1345091..1347790 | - | 2700 | WP_058062651.1 | aconitate hydratase AcnA | - |
| GN236_RS05940 () | 1347908..1350433 | - | 2526 | WP_156625175.1 | cation-translocating P-type ATPase | - |
| GN236_RS05945 () | 1350524..1351219 | - | 696 | WP_007055252.1 | hypothetical protein | - |
| GN236_RS05950 () | 1351231..1352499 | - | 1269 | WP_007055251.1 | RsmD family RNA methyltransferase | - |
| GN236_RS05955 () | 1352489..1353247 | - | 759 | WP_058060960.1 | DUF3159 domain-containing protein | - |
| GN236_RS05960 () | 1353263..1354117 | - | 855 | WP_058101841.1 | DUF3710 domain-containing protein | - |
| GN236_RS05965 () | 1354242..1355102 | + | 861 | WP_007052617.1 | exodeoxyribonuclease III | - |
| GN236_RS05970 () | 1355411..1357420 | - | 2010 | WP_156625177.1 | Glutathione import ATP-binding protein GsiA | VF |
| GN236_RS05975 () | 1357443..1358447 | - | 1005 | WP_015713719.1 | ABC transporter permease | - |
| GN236_RS05980 () | 1358466..1359392 | - | 927 | WP_007052614.1 | ABC transporter permease | - |
| GN236_RS05985 () | 1359693..1361333 | - | 1641 | WP_023658440.1 | ABC transporter substrate-binding protein | - |
| GN236_RS05990 () | 1361587..1362660 | - | 1074 | WP_131202850.1 | Tyrosine recombinase XerC | VF |
| GN236_RS05995 () | 1362695..1362952 | - | 258 | WP_007052610.1 | hypothetical protein | - |
| GN236_RS06000 () | 1363164..1364267 | - | 1104 | WP_080969844.1 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| GN236_RS06005 () | 1364225..1365202 | - | 978 | WP_008783121.1 | chorismate mutase | - |
| GN236_RS06010 () | 1365282..1365728 | - | 447 | WP_007052607.1 | alcohol dehydrogenase | - |
| GN236_RS06015 () | 1365828..1367759 | - | 1932 | WP_156625179.1 | GTP-binding protein TypA/BipA | VF |
| GN236_RS06020 () | 1368074..1369423 | - | 1350 | WP_007052605.1 | MFS transporter | - |
| GN236_RS06025 () | 1369455..1370702 | - | 1248 | WP_077389025.1 | cysteine desulfurase | - |
| GN236_RS06030 () | 1370705..1371598 | - | 894 | WP_007052603.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GN236_RS06035 () | 1371602..1373233 | - | 1632 | WP_007054450.1 | L-aspartate oxidase | - |
| GN236_RS06040 () | 1373325..1374605 | - | 1281 | WP_007052601.1 | quinolinate synthase NadA | - |
| GN236_RS06045 () | 1374665..1375492 | - | 828 | WP_013410758.1 | NUDIX hydrolase | - |
| GN236_RS06050 () | 1375624..1376340 | - | 717 | WP_156625181.1 | SMC-Scp complex subunit ScpB | - |
| GN236_RS06055 () | 1376353..1377267 | - | 915 | WP_007052598.1 | segregation/condensation protein A | - |
| GN236_RS06060 () | 1377286..1378125 | - | 840 | WP_007052597.1 | hypothetical protein | VF |
| GN236_RS06065 () | 1378387..1381233 | - | 2847 | WP_007054447.1 | putative ABC transporter ATP-binding protein YknY | VF |
| GN236_RS06070 () | 1381361..1382287 | - | 927 | WP_012471804.1 | Tyrosine recombinase XerD | VF |
| GN236_RS06075 () | 1382357..1382740 | - | 384 | WP_007052594.1 | 50S ribosomal protein L20 | - |
| GN236_RS06080 () | 1382793..1382987 | - | 195 | WP_007052593.1 | 50S ribosomal protein L35 | - |
| GN236_RS06085 () | 1382968..1383690 | - | 723 | WP_032682519.1 | translation initiation factor IF-3 | - |
| GN236_RS06090 () | 1383975..1384979 | - | 1005 | WP_007054442.1 | fused MFS/spermidine synthase | - |
| GN236_RS06095 () | 1385211..1385936 | + | 726 | WP_007054441.1 | thiamine diphosphokinase | - |
| GN236_RS06105 () | 1386176..1387234 | + | 1059 | WP_007052589.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| GN236_RS06110 () | 1387328..1387837 | + | 510 | WP_007054439.1 | Cys-tRNA(Pro) deacylase | - |
| GN236_RS06115 () | 1387877..1388935 | - | 1059 | WP_156625183.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| GN236_RS06120 () | 1389160..1390116 | + | 957 | WP_007052585.1 | aldose 1-epimerase family protein | - |
| GN236_RS06125 () | 1390242..1391186 | + | 945 | WP_156625185.1 | aldose 1-epimerase family protein | - |
| GN236_RS06130 () | 1391453..1391773 | - | 321 | WP_007054435.1 | hypothetical protein | - |
| GN236_RS06135 () | 1391773..1392561 | - | 789 | WP_007054434.1 | sigma-70 family RNA polymerase sigma factor | - |
| GN236_RS06140 () | 1392700..1394253 | + | 1554 | WP_007054433.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase | - |
| GN236_RS06145 () | 1394375..1395370 | + | 996 | WP_007052578.1 | GNAT family N-acetyltransferase | - |
| GN236_RS06150 () | 1395489..1399166 | - | 3678 | WP_156625187.1 | chromosome segregation protein SMC | - |
| GN236_RS06155 () | 1399227..1400816 | - | 1590 | WP_065438534.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| GN236_RS06165 () | 1402071..1402922 | + | 852 | WP_197272311.1 | hypothetical protein | - |
| GN236_RS06170 () | 1403226..1404821 | + | 1596 | WP_015713723.1 | aminopeptidase P family protein | - |
| GN236_RS06175 () | 1404870..1405391 | + | 522 | WP_007054427.1 | NUDIX domain-containing protein | - |
| GN236_RS06180 () | 1405441..1407150 | - | 1710 | WP_007052568.1 | Glutathione import ATP-binding protein GsiA | VF |
| GN236_RS06185 () | 1407154..1408323 | - | 1170 | WP_007052567.1 | ABC transporter permease | - |
| GN236_RS06190 () | 1408325..1409416 | - | 1092 | WP_007052566.1 | ABC transporter permease | - |
| GN236_RS06195 () | 1409582..1411216 | - | 1635 | WP_022527697.1 | ABC transporter substrate-binding protein | - |
| GN236_RS06200 () | 1411496..1412779 | - | 1284 | WP_014485530.1 | N-acetylglucosamine-6-phosphate deacetylase | - |
| GN236_RS06205 () | 1412835..1413647 | - | 813 | WP_007052563.1 | glucosamine-6-phosphate deaminase | - |
| GN236_RS06210 () | 1413985..1415109 | + | 1125 | WP_007054423.1 | ROK family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|