MGE detailed information
MGE type: Genomic_island MGE length: 13058 bp
Accession: NZ_CP046400 Location: 3492780..3505837 Organism: Pseudodesulfovibrio cashew strain SRB007 Replicon: chromosome
Accession: NZ_CP046400 Location: 3492780..3505837 Organism: Pseudodesulfovibrio cashew strain SRB007 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GM415_RS15955 () | 3487872..3489100 | - | 1229 | Protein_3142 | ABC transporter substrate-binding protein | - |
| GM415_RS15960 () | 3489129..3490430 | - | 1302 | WP_158949943.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
| GM415_RS15965 () | 3490796..3492556 | - | 1761 | WP_158949945.1 | sigma 54-interacting transcriptional regulator | - |
| GM415_RS15970 () | 3492618..3493025 | + | 408 | WP_158949947.1 | hypothetical protein | - |
| GM415_RS15975 () | 3493032..3493313 | + | 282 | WP_158949949.1 | hypothetical protein | - |
| GM415_RS15980 () | 3493654..3494016 | + | 363 | WP_158949951.1 | DUF4160 domain-containing protein | - |
| GM415_RS15985 () | 3494153..3495217 | + | 1065 | WP_158949953.1 | nucleoid-associated protein | - |
| GM415_RS15990 () | 3495227..3496201 | + | 975 | WP_158949955.1 | RelA/SpoT domain-containing protein | - |
| GM415_RS15995 () | 3496255..3496779 | + | 525 | WP_158949957.1 | hypothetical protein | - |
| GM415_RS16000 () | 3497151..3497471 | - | 321 | WP_158949959.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| GM415_RS16005 () | 3497482..3497760 | - | 279 | WP_158949961.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GM415_RS16010 () | 3498053..3498265 | + | 213 | WP_158949963.1 | hypothetical protein | - |
| GM415_RS16015 () | 3498327..3498779 | - | 453 | WP_158949965.1 | hypothetical protein | - |
| GM415_RS16020 () | 3498852..3499406 | - | 555 | WP_158949966.1 | Tn3 family transposase TnpR_TnAs2 | Transposase |
| GM415_RS16025 () | 3499593..3500111 | - | 519 | WP_158949967.1 | terminase small subunit | - |
| GM415_RS16030 () | 3500357..3500656 | - | 300 | WP_158949968.1 | helix-turn-helix domain-containing protein | - |
| GM415_RS16035 () | 3500649..3501269 | - | 621 | WP_158949969.1 | Tyrosine recombinase XerD | VF |
| GM415_RS16040 () | 3501428..3501733 | - | 306 | WP_158949970.1 | hypothetical protein | - |
| GM415_RS16045 () | 3501733..3502476 | - | 744 | WP_158949971.1 | helix-turn-helix domain-containing protein | - |
| GM415_RS16050 () | 3502561..3502758 | - | 198 | WP_158949972.1 | AlpA family phage regulatory protein | - |
| GM415_RS16055 () | 3502864..3503721 | - | 858 | WP_158949973.1 | hypothetical protein | - |
| GM415_RS16060 () | 3503730..3504944 | - | 1215 | WP_158949974.1 | Prophage integrase IntS ; Integrase | Integrase |
| GM415_RS16070 () | 3505403..3505837 | + | 435 | WP_158949975.1 | transcriptional repressor | - |
| GM415_RS16075 () | 3505952..3506938 | - | 987 | WP_158949976.1 | hypothetical protein | - |
| GM415_RS16080 () | 3507269..3508270 | + | 1002 | WP_158949977.1 | phosphonate ABC transporter substrate-binding protein | - |
| GM415_RS16085 () | 3508274..3509881 | + | 1608 | WP_158949978.1 | GHKL domain-containing protein | - |
| GM415_RS16090 () | 3509894..3510229 | - | 336 | WP_158949979.1 | tRNA-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|